-
2
-
-
0035895505
-
The sequence of the human genome
-
[2] Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., et al. The sequence of the human genome. Science 291 (2001), 1304–1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
-
3
-
-
84975795680
-
An integrated map of genetic variation from 1092 human genomes
-
[3] The 1000 Genomes Project Consortium, An integrated map of genetic variation from 1092 human genomes. Nature(491), 2012, 56–65.
-
(2012)
Nature
, Issue.491
, pp. 56-65
-
-
The 1000 Genomes Project Consortium1
-
4
-
-
0016800090
-
A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
-
[4] Sanger, F., Coulson, A.R., A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J Mol Biol 94 (1975), 441–448.
-
(1975)
J Mol Biol
, vol.94
, pp. 441-448
-
-
Sanger, F.1
Coulson, A.R.2
-
5
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
[5] Sanger, F., Nicklen, S., Coulson, A.R., DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74 (1977), 5463–5467.
-
(1977)
Proc Natl Acad Sci USA
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
7
-
-
77956279237
-
Assembly of large genomes using second-generation sequencing
-
[7] Schatz, M.C., Delcher, A.L., Salzberg, S.L., Assembly of large genomes using second-generation sequencing. Genome Res 20 (2010), 1165–1173.
-
(2010)
Genome Res
, vol.20
, pp. 1165-1173
-
-
Schatz, M.C.1
Delcher, A.L.2
Salzberg, S.L.3
-
8
-
-
78650868150
-
A window into third-generation sequencing
-
[8] Schadt, E.E., Turner, S., Kasarskis, A., A window into third-generation sequencing. Hum Mol Genet 19 (2010), R227–R240.
-
(2010)
Hum Mol Genet
, vol.19
, pp. R227-R240
-
-
Schadt, E.E.1
Turner, S.2
Kasarskis, A.3
-
9
-
-
84874194145
-
Sequence assembly demystified
-
[9] Nagarajan, N., Pop, M., Sequence assembly demystified. Nat Rev Genet 14 (2013), 157–167.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 157-167
-
-
Nagarajan, N.1
Pop, M.2
-
10
-
-
84906842527
-
The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms
-
[10] Larsen, P.A., Heilman, A.M., Yoder, A.D., The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms. BMC Genomics, 15, 2014, 720.
-
(2014)
BMC Genomics
, vol.15
, pp. 720
-
-
Larsen, P.A.1
Heilman, A.M.2
Yoder, A.D.3
-
11
-
-
84924388692
-
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
-
[11] Ashton, P.M., Nair, S., Dallman, T., Rubino, S., Rabsch, W., Mwaigwisya, S., et al. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island. Nat Biotechnol 33 (2015), 296–300.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 296-300
-
-
Ashton, P.M.1
Nair, S.2
Dallman, T.3
Rubino, S.4
Rabsch, W.5
Mwaigwisya, S.6
-
12
-
-
84925352769
-
Assessing the performance of the Oxford Nanopore Technologies MinION
-
[12] Laver, T., Harrison, J., O'Neill, P.A., Moore, K., Farbos, A., Paszkiewicz, K., et al. Assessing the performance of the Oxford Nanopore Technologies MinION. Biomol Detect Quantif 3 (2015), 1–8.
-
(2015)
Biomol Detect Quantif
, vol.3
, pp. 1-8
-
-
Laver, T.1
Harrison, J.2
O'Neill, P.A.3
Moore, K.4
Farbos, A.5
Paszkiewicz, K.6
-
13
-
-
84970952281
-
MinION analysis and reference consortium: phase 1 data release and analysis
-
[13] Ip, C.L., Loose, M., Tyson, J.R., de Cesare, M., Brown, B.L., Jain, M., et al. MinION analysis and reference consortium: phase 1 data release and analysis. F1000Res, 4, 2015, 1075.
-
(2015)
F1000Res
, vol.4
, pp. 1075
-
-
Ip, C.L.1
Loose, M.2
Tyson, J.R.3
de Cesare, M.4
Brown, B.L.5
Jain, M.6
-
15
-
-
84935113569
-
Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
-
[15] Viterbi, A.J., Error bounds for convolutional codes and an asymptotically optimum decoding algorithm. IEEE Trans Inf Theory 13 (1967), 260–269.
-
(1967)
IEEE Trans Inf Theory
, vol.13
, pp. 260-269
-
-
Viterbi, A.J.1
-
16
-
-
84994504194
-
-
Metrichor. Cloud-based real time base-calling solutions for nanopore sequencing. <>.
-
[16] Metrichor. Cloud-based real time base-calling solutions for nanopore sequencing. < https://metrichor.com/s/>.
-
-
-
-
17
-
-
84938421951
-
A complete bacterial genome assembled de novo using only nanopore sequencing data
-
[17] Loman, N.J., Quick, J., Simpson, J.T., A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat Methods 12 (2015), 733–735.
-
(2015)
Nat Methods
, vol.12
, pp. 733-735
-
-
Loman, N.J.1
Quick, J.2
Simpson, J.T.3
-
18
-
-
84959039248
-
Nanopore sequencing detects structural variants in cancer
-
[18] Norris, A.L., Workman, R.E., Fan, Y., Eshleman, J.R., Timp, W., Nanopore sequencing detects structural variants in cancer. Cancer Biol Ther 17 (2016), 246–253.
-
(2016)
Cancer Biol Ther
, vol.17
, pp. 246-253
-
-
Norris, A.L.1
Workman, R.E.2
Fan, Y.3
Eshleman, J.R.4
Timp, W.5
-
19
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
[19] Li, H., Durbin, R., Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25 (2009), 1754–1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
20
-
-
79952256999
-
Adaptive seeds tame genomic sequence comparison
-
[20] Kiełbasa, S.M., Wan, R., Sato, K., Horton, P., Frith, M.C., Adaptive seeds tame genomic sequence comparison. Genome Res 21 (2011), 487–493.
-
(2011)
Genome Res
, vol.21
, pp. 487-493
-
-
Kiełbasa, S.M.1
Wan, R.2
Sato, K.3
Horton, P.4
Frith, M.C.5
-
21
-
-
84924426384
-
Poretools: a toolkit for analyzing nanopore sequence data
-
[21] Loman, N.J., Quinlan, A.R., Poretools: a toolkit for analyzing nanopore sequence data. Bioinformatics 30 (2014), 3399–3401.
-
(2014)
Bioinformatics
, vol.30
, pp. 3399-3401
-
-
Loman, N.J.1
Quinlan, A.R.2
-
22
-
-
84922368174
-
PoRe: an R package for the visualization and analysis of nanopore sequencing data
-
[22] Watson, M., Thomson, M., Risse, J., Talbot, R., Santoyo-Lopez, J., Gharbi, K., et al. PoRe: an R package for the visualization and analysis of nanopore sequencing data. Bioinformatics 31 (2015), 114–115.
-
(2015)
Bioinformatics
, vol.31
, pp. 114-115
-
-
Watson, M.1
Thomson, M.2
Risse, J.3
Talbot, R.4
Santoyo-Lopez, J.5
Gharbi, K.6
-
23
-
-
84959879117
-
NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
-
[23] Leggett, R.M., Heavens, D., Caccamo, M., Clark, M.D., Dave, R.P., NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles. Bioinformatics 32 (2016), 142–144.
-
(2016)
Bioinformatics
, vol.32
, pp. 142-144
-
-
Leggett, R.M.1
Heavens, D.2
Caccamo, M.3
Clark, M.D.4
Dave, R.P.5
-
24
-
-
84994541693
-
-
MinoTour. Real time analysis tools. <>.
-
[24] MinoTour. Real time analysis tools. < http://minotour.github.io/minoTour/>.
-
-
-
-
25
-
-
84964528782
-
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
-
[25] Sović, I., Šikić, M., Wilm, A., Fenlon, S.N., Chen, S., Nagarajan, N., Fast and sensitive mapping of nanopore sequencing reads with GraphMap. Nat Commun, 7, 2016, 11307.
-
(2016)
Nat Commun
, vol.7
, pp. 11307
-
-
Sović, I.1
Šikić, M.2
Wilm, A.3
Fenlon, S.N.4
Chen, S.5
Nagarajan, N.6
-
26
-
-
84979584495
-
LINKS: scalable, alignment-free scaffolding of draft genomes with long reads
-
[26] Warren, R.L., Yang, C., Vandervalk, B.P., Behsaz, B., Lagman, A., Jones, S.J., et al. LINKS: scalable, alignment-free scaffolding of draft genomes with long reads. Gigascience, 4, 2015, 35.
-
(2015)
Gigascience
, vol.4
, pp. 35
-
-
Warren, R.L.1
Yang, C.2
Vandervalk, B.P.3
Behsaz, B.4
Lagman, A.5
Jones, S.J.6
-
27
-
-
84926472171
-
Improved data analysis for the MinION nanopore sequencer
-
[27] Jain, M., Fiddes, I.T., Miga, K.H., Olsen, H.E., Paten, B., Akeson, M., Improved data analysis for the MinION nanopore sequencer. Nat Methods 12 (2015), 351–356.
-
(2015)
Nat Methods
, vol.12
, pp. 351-356
-
-
Jain, M.1
Fiddes, I.T.2
Miga, K.H.3
Olsen, H.E.4
Paten, B.5
Akeson, M.6
-
28
-
-
84946557268
-
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
-
[28] Goodwin, S., Gurtowski, J., Ethe-Sayers, S., Deshpande, P., Schatz, M.C., McCombie, W.R., Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res 25 (2015), 1750–1756.
-
(2015)
Genome Res
, vol.25
, pp. 1750-1756
-
-
Goodwin, S.1
Gurtowski, J.2
Ethe-Sayers, S.3
Deshpande, P.4
Schatz, M.C.5
McCombie, W.R.6
-
29
-
-
84994534092
-
-
Nanocorrect. Error-correction tool for nanopore data. <>.
-
[29] Nanocorrect. Error-correction tool for nanopore data. < https://github.com/jts/nanocorrect/>.
-
-
-
-
30
-
-
84994534094
-
-
npReader. Real time conversion and analysis of nanopore reads. <>.
-
[30] npReader. Real time conversion and analysis of nanopore reads. < https://github.com/mdcao/npReader/>.
-
-
-
-
31
-
-
84943637090
-
De novo sequencing and variant calling with nanopores using PoreSeq
-
[31] Szalay, T., Golovchenko, J.A., De novo sequencing and variant calling with nanopores using PoreSeq. Nat Biotechnol 33 (2015), 1087–1091.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 1087-1091
-
-
Szalay, T.1
Golovchenko, J.A.2
-
32
-
-
84902707563
-
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
-
[32] Boetzer, M., Pirovano, W., SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information. BMC Bioinformatics, 15, 2014, 211.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 211
-
-
Boetzer, M.1
Pirovano, W.2
-
33
-
-
84994535991
-
-
SMIS. Genome scaffolding tools for nanopore long reads. <>.
-
[33] SMIS. Genome scaffolding tools for nanopore long reads. < https://sourceforge.net/projects/phusion2/files/smis/>.
-
-
-
-
34
-
-
84862008025
-
Next-generation sequencing and large genome assemblies
-
[34] Henson, J., Tischler, G., Ning, Z., Next-generation sequencing and large genome assemblies. Pharmacogenomics 13 (2012), 901–915.
-
(2012)
Pharmacogenomics
, vol.13
, pp. 901-915
-
-
Henson, J.1
Tischler, G.2
Ning, Z.3
-
35
-
-
67449095888
-
Genome assembly reborn: recent computational challenges
-
[35] Pop, M., Genome assembly reborn: recent computational challenges. Brief Bioinf 10 (2009), 354–366.
-
(2009)
Brief Bioinf
, vol.10
, pp. 354-366
-
-
Pop, M.1
-
36
-
-
84994487485
-
-
Quiver. PacBio's flagship consensus and variant caller. <>
-
[36] Quiver. PacBio's flagship consensus and variant caller. < https://github.com/PacificBiosciences/GenomicConsensus>.
-
-
-
-
37
-
-
84958554065
-
Efficient local alignment discovery amongst noisy long reads
-
D. Brown B. Morgenstern Springer Berlin, Heidelberg
-
[37] Myers, G., Efficient local alignment discovery amongst noisy long reads. Brown, D., Morgenstern, B., (eds.) Algorithms in bioinformatics. Lecture notes in computer science, 2014, Springer, Berlin, Heidelberg, 52–67.
-
(2014)
Algorithms in bioinformatics. Lecture notes in computer science
, pp. 52-67
-
-
Myers, G.1
-
38
-
-
0036203448
-
Multiple sequence alignment using partial order graphs
-
[38] Lee, C., Grasso, C., Sharlow, M.F., Multiple sequence alignment using partial order graphs. Bioinformatics 18 (2002), 452–464.
-
(2002)
Bioinformatics
, vol.18
, pp. 452-464
-
-
Lee, C.1
Grasso, C.2
Sharlow, M.F.3
-
39
-
-
57249105124
-
Aggressive assembly of pyrosequencing reads with mates
-
[39] Miller, J.R., Delcher, A.L., Koren, S., Venter, E., Walenz, B.P., Brownley, A., et al. Aggressive assembly of pyrosequencing reads with mates. Bioinformatics 24 (2008), 2818–2824.
-
(2008)
Bioinformatics
, vol.24
, pp. 2818-2824
-
-
Miller, J.R.1
Delcher, A.L.2
Koren, S.3
Venter, E.4
Walenz, B.P.5
Brownley, A.6
-
40
-
-
84994478472
-
-
HGAP. The hierarchical genome assembly process. <>.
-
[40] HGAP. The hierarchical genome assembly process. < https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/HGAP>.
-
-
-
-
41
-
-
84994540049
-
-
h5 files. Data files you received from your service provider. <>.
-
[41] h5 files. Data files you received from your service provider. < https://github.com/PacificBiosciences/SMRT-Analysis/wiki/Data-files-you-received-from-your-service-provider>.
-
-
-
-
42
-
-
84866266717
-
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
-
[42] Chaisson, M.J., Tesler, G., Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinformatics, 13, 2012, 238.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 238
-
-
Chaisson, M.J.1
Tesler, G.2
-
43
-
-
84863651532
-
Hybrid error correction and de novo assembly of single-molecule sequencing reads
-
[43] Koren, S., Schatz, M.C., Walenz, B.P., Martin, J., Howard, J.T., Ganapathy, G., et al. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat Biotechnol 30 (2012), 693–700.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 693-700
-
-
Koren, S.1
Schatz, M.C.2
Walenz, B.P.3
Martin, J.4
Howard, J.T.5
Ganapathy, G.6
-
44
-
-
84883664726
-
Reducing assembly complexity of microbial genomes with single-molecule sequencing
-
[44] Koren, S., Harhay, G.P., Smith, T.P., Bono, J.L., Harhay, D.M., Mcvey, S.D., et al. Reducing assembly complexity of microbial genomes with single-molecule sequencing. Genome Biol, 14, 2013, R101.
-
(2013)
Genome Biol
, vol.14
, pp. R101
-
-
Koren, S.1
Harhay, G.P.2
Smith, T.P.3
Bono, J.L.4
Harhay, D.M.5
Mcvey, S.D.6
-
45
-
-
84930851165
-
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
-
[45] Berlin, K., Koren, S., Chin, C.S., Drake, J.P., Landolin, J.M., Phillippy, A.M., Assembling large genomes with single-molecule sequencing and locality-sensitive hashing. Nat Biotechnol 33 (2015), 623–630.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 623-630
-
-
Berlin, K.1
Koren, S.2
Chin, C.S.3
Drake, J.P.4
Landolin, J.M.5
Phillippy, A.M.6
-
46
-
-
84925497196
-
Resolving the complexity of the human genome using single-molecule sequencing
-
[46] Chaisson, M.J., Huddleston, J., Dennis, M.Y., Sudmant, P.H., Malig, M., Hormozdiari, F., et al. Resolving the complexity of the human genome using single-molecule sequencing. Nature 517 (2015), 608–611.
-
(2015)
Nature
, vol.517
, pp. 608-611
-
-
Chaisson, M.J.1
Huddleston, J.2
Dennis, M.Y.3
Sudmant, P.H.4
Malig, M.5
Hormozdiari, F.6
-
47
-
-
84938423867
-
Assembly and diploid architecture of an individual human genome via single-molecule technologies
-
[47] Pendleton, M., Sebra, R., Pang, A.W., Ummat, A., Franzen, O., Rausch, T., et al. Assembly and diploid architecture of an individual human genome via single-molecule technologies. Nat Methods 12 (2015), 780–786.
-
(2015)
Nat Methods
, vol.12
, pp. 780-786
-
-
Pendleton, M.1
Sebra, R.2
Pang, A.W.3
Ummat, A.4
Franzen, O.5
Rausch, T.6
-
48
-
-
84994482649
-
-
Falcon. A set of tools for fast aligning long reads for consensus and assembly. <>.
-
[48] Falcon. A set of tools for fast aligning long reads for consensus and assembly. < https://github.com/PacificBiosciences/FALCON>.
-
-
-
-
49
-
-
84992371738
-
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
-
[49] Li, H., Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences. Bioinformatics 32 (2016), 2103–2110.
-
(2016)
Bioinformatics
, vol.32
, pp. 2103-2110
-
-
Li, H.1
-
50
-
-
84994497168
-
-
Minimap. Experimental tool to find approximate mapping positions between long sequences. <>.
-
[50] Minimap. Experimental tool to find approximate mapping positions between long sequences. < https://github.com/lh3/minimap/>.
-
-
-
-
51
-
-
79952178131
-
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
-
[51] Gnerrea, S., MacCalluma, I., Przybylskia, D., Ribeiroa, F.J., Burtona, J.N., Walker, B.J., et al. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc Natl Acad Sci U S A 108 (2011), 1513–1518.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 1513-1518
-
-
Gnerrea, S.1
MacCalluma, I.2
Przybylskia, D.3
Ribeiroa, F.J.4
Burtona, J.N.5
Walker, B.J.6
-
52
-
-
84994505025
-
-
pacBioToCA. Error correction via Celera Assembler. <>.
-
[52] pacBioToCA. Error correction via Celera Assembler. < https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/pacBioToCA>.
-
-
-
-
53
-
-
84860771820
-
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
-
[53] Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19 (2012), 455–477.
-
(2012)
J Comput Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
-
54
-
-
84911400440
-
Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences
-
[54] Utturkar, S.M., Klingeman, D.M., Land, M.L., Schadt, C.W., Doktycz, M.J., Pelletier, D.A., et al. Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences. Bioinformatics 30 (2014), 2709–2716.
-
(2014)
Bioinformatics
, vol.30
, pp. 2709-2716
-
-
Utturkar, S.M.1
Klingeman, D.M.2
Land, M.L.3
Schadt, C.W.4
Doktycz, M.J.5
Pelletier, D.A.6
-
55
-
-
84929993004
-
Completing bacterial genome assemblies: strategy and performance comparisons
-
[55] Liao, Y.C., Lin, S.H., Lin, H.H., Completing bacterial genome assemblies: strategy and performance comparisons. Sci Rep, 5, 2015, 8747.
-
(2015)
Sci Rep
, vol.5
, pp. 8747
-
-
Liao, Y.C.1
Lin, S.H.2
Lin, H.H.3
-
56
-
-
84990876773
-
Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads
-
[56] Sović, I., Križanović, K., Skala, K., Šikić, M., Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads. Bioinformatics 32 (2016), 2582–2589.
-
(2016)
Bioinformatics
, vol.32
, pp. 2582-2589
-
-
Sović, I.1
Križanović, K.2
Skala, K.3
Šikić, M.4
-
57
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
[57] Kurtz, S., Phillippy, A., Delcher, A.L., Smoot, M., Shumway, M., Antonescu, C., Salzberg, S.L., Versatile and open software for comparing large genomes. Genome Biol, 5, 2004, R12.
-
(2004)
Genome Biol
, vol.5
, pp. R12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
58
-
-
84934284959
-
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
-
[58] Quick, J., Ashton, P., Calus, S., Chatt, C., Gossain, S., Hawker, J., et al. Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella. Genome Biol, 16, 2015, 114.
-
(2015)
Genome Biol
, vol.16
, pp. 114
-
-
Quick, J.1
Ashton, P.2
Calus, S.3
Chatt, C.4
Gossain, S.5
Hawker, J.6
-
59
-
-
84937955824
-
Real-time digital pathogen surveillance—the time is now
-
[59] Gardy, J., Loman, N.J., Rambaut, A., Real-time digital pathogen surveillance—the time is now. Genome Biol, 16, 2015, 155.
-
(2015)
Genome Biol
, vol.16
, pp. 155
-
-
Gardy, J.1
Loman, N.J.2
Rambaut, A.3
-
60
-
-
84958068536
-
Real-time, portable genome sequencing for Ebola surveillance
-
[60] Quick, J., Loman, N.J., Duraffour, S., Simpson, J.T., Severi, E., Cowley, L., et al. Real-time, portable genome sequencing for Ebola surveillance. Nature 530 (2016), 228–232.
-
(2016)
Nature
, vol.530
, pp. 228-232
-
-
Quick, J.1
Loman, N.J.2
Duraffour, S.3
Simpson, J.T.4
Severi, E.5
Cowley, L.6
-
61
-
-
84955114356
-
Nanopore sequencing as a rapidly deployable ebola outbreak tool
-
[61] Hoenen, T., Groseth, A., Rosenke, K., Fischer, R.J., Hoenen, A., Judson, S.D., et al. Nanopore sequencing as a rapidly deployable ebola outbreak tool. Emerg Infect Dis 22 (2016), 331–334.
-
(2016)
Emerg Infect Dis
, vol.22
, pp. 331-334
-
-
Hoenen, T.1
Groseth, A.2
Rosenke, K.3
Fischer, R.J.4
Hoenen, A.5
Judson, S.D.6
-
62
-
-
84952009484
-
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
-
[62] Bradley, P., Gordon, N.C., Walker, T.M., Dunn, L., Heys, S., Huang, B., et al. Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis. Nat Commun, 6, 2015, 10063.
-
(2015)
Nat Commun
, vol.6
, pp. 10063
-
-
Bradley, P.1
Gordon, N.C.2
Walker, T.M.3
Dunn, L.4
Heys, S.5
Huang, B.6
-
63
-
-
84991528852
-
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing
-
[63] Cao, M.D., Ganesamoorthy, D., Elliott, A.G., Zhang, H., Cooper, M.A., Coin, L.J., Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing. Gigascience, 5, 2016, 32.
-
(2016)
Gigascience
, vol.5
, pp. 32
-
-
Cao, M.D.1
Ganesamoorthy, D.2
Elliott, A.G.3
Zhang, H.4
Cooper, M.A.5
Coin, L.J.6
-
64
-
-
84953865446
-
Rapid short-read sequencing and aneuploidy detection using MinION nanopore technology
-
[64] Wei, S., Williams, Z., Rapid short-read sequencing and aneuploidy detection using MinION nanopore technology. Genetics 202 (2016), 37–44.
-
(2016)
Genetics
, vol.202
, pp. 37-44
-
-
Wei, S.1
Williams, Z.2
-
65
-
-
84975804424
-
Mapping copy number variation by population-scale genome sequencing
-
[65] Mills, R.E., Walter, K., Stewart, C., Handsaker, R.E., Chen, K., Alkan, C., et al. Mapping copy number variation by population-scale genome sequencing. Nature 470 (2011), 59–65.
-
(2011)
Nature
, vol.470
, pp. 59-65
-
-
Mills, R.E.1
Walter, K.2
Stewart, C.3
Handsaker, R.E.4
Chen, K.5
Alkan, C.6
-
66
-
-
84943182461
-
An integrated map of structural variation in 2504 human genomes
-
[66] Sudmant, P.H., Rausch, T., Gardner, E.J., Handsaker, R.E., Abyzov, A., Huddleston, J., et al. An integrated map of structural variation in 2504 human genomes. Nature 526 (2015), 75–81.
-
(2015)
Nature
, vol.526
, pp. 75-81
-
-
Sudmant, P.H.1
Rausch, T.2
Gardner, E.J.3
Handsaker, R.E.4
Abyzov, A.5
Huddleston, J.6
-
67
-
-
84923642484
-
A copy number variation map of the human genome
-
[67] Zarrei, M., MacDonald, J.R., Merico, D., Scherer, S.W., A copy number variation map of the human genome. Nat Rev Genet 16 (2015), 172–183.
-
(2015)
Nat Rev Genet
, vol.16
, pp. 172-183
-
-
Zarrei, M.1
MacDonald, J.R.2
Merico, D.3
Scherer, S.W.4
-
68
-
-
84891783452
-
The database of genomic variants: a curated collection of structural variation in the human genome
-
[68] MacDonald, J.R., Ziman, R., Yuen, R.K., Feuk, L., Scherer, S.W., The database of genomic variants: a curated collection of structural variation in the human genome. Nucleic Acids Res 42 (2014), D986–D992.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D986-D992
-
-
MacDonald, J.R.1
Ziman, R.2
Yuen, R.K.3
Feuk, L.4
Scherer, S.W.5
-
69
-
-
84941749763
-
Making the difference: integrating structural variation detection tools
-
[69] Lin, K., Smit, S., Bonnema, G., Sanchez-Perez, G., de Ridder, D., Making the difference: integrating structural variation detection tools. Brief Bioinf 16 (2015), 852–864.
-
(2015)
Brief Bioinf
, vol.16
, pp. 852-864
-
-
Lin, K.1
Smit, S.2
Bonnema, G.3
Sanchez-Perez, G.4
de Ridder, D.5
-
70
-
-
85037550429
-
Detection of genomic structural variants from next-generation sequencing data
-
[70] Tattini, L., D'Aurizio, R., Magi, A., Detection of genomic structural variants from next-generation sequencing data. Front Bioeng Biotechnol, 3, 2015, 92.
-
(2015)
Front Bioeng Biotechnol
, vol.3
, pp. 92
-
-
Tattini, L.1
D'Aurizio, R.2
Magi, A.3
-
71
-
-
84980361397
-
Real-time selective sequencing using nanopore technology
-
[71] Loose, M., Malla, S., Stout, M., Real-time selective sequencing using nanopore technology. Nat Methods 13 (2016), 751–754.
-
(2016)
Nat Methods
, vol.13
, pp. 751-754
-
-
Loose, M.1
Malla, S.2
Stout, M.3
-
72
-
-
84936764311
-
Scaffolding of a bacterial genome using MinION nanopore sequencing
-
[72] Karlsson, E., Lärkeryd, A., Sjödin, A., Forsman, M., Stenberg, P., Scaffolding of a bacterial genome using MinION nanopore sequencing. Sci Rep, 5, 2015, 11996.
-
(2015)
Sci Rep
, vol.5
, pp. 11996
-
-
Karlsson, E.1
Lärkeryd, A.2
Sjödin, A.3
Forsman, M.4
Stenberg, P.5
-
73
-
-
84994481666
-
-
Nanocall: an open source basecaller for Oxford Nanopore sequencing data. Bioinformatics 2016. pii: btw569.
-
[73] David M, Dursi LJ, Yao D, Boutros PC, Simpson JT. Nanocall: an open source basecaller for Oxford Nanopore sequencing data. Bioinformatics 2016. pii: btw569.
-
-
-
David, M.1
Dursi, L.J.2
Yao, D.3
Boutros, P.C.4
Simpson, J.T.5
-
74
-
-
84994478486
-
-
PromethION. Small benchtop system for high throughput real-time biological analyses and allowing large sample numbers. <>.
-
[74] PromethION. Small benchtop system for high throughput real-time biological analyses and allowing large sample numbers. < https://nanoporetech.com/community/promethion-early-access-programme/>.
-
-
-
-
75
-
-
84994540068
-
-
Sequel. The scalable platform for single molecule, real-time sequencing. <>.
-
[75] Sequel. The scalable platform for single molecule, real-time sequencing. < http://www.pacb.com/products-and-services/pacbio-systems/sequel/>.
-
-
-
-
76
-
-
84994514048
-
-
Oxford Nanopore updates: reveals the nanopore used in nanopore devices. <>.
-
[76] Oxford Nanopore updates: reveals the nanopore used in nanopore devices. < http://nextgenseek.com/2016/03/oxford-nanopore-updates-from-technology-focus-by-clive-g-brown/>.
-
-
-
-
77
-
-
84994508265
-
-
SmidgION: Oxford Nanopore announce iPhone-powered sequencing. <>.
-
[77] SmidgION: Oxford Nanopore announce iPhone-powered sequencing. < https://nanoporetech.com/products/smidgion/>.
-
-
-
|