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Volumn 359, Issue 1, 2016, Pages 215-229

Molecular Properties of Drugs Interacting with SLC22 Transporters OAT1, OAT3, OCT1, and OCT2: A Machine-Learning Approachs

Author keywords

[No Author keywords available]

Indexed keywords

ADEFOVIR; AMPHOLYTE; BUMETANIDE; CATION; CEFADROXIL; CLEMASTINE; DIFLUNISAL; DRUG METABOLITE; FENOFIBRIC ACID; HALOPERIDOL; INDOMETACIN; LIGAND; LOSARTAN; LOXOPROFEN; NAPROXEN; ORGANIC ANION TRANSPORTER 1; ORGANIC ANION TRANSPORTER 1 LIGAND; ORGANIC ANION TRANSPORTER 3; ORGANIC ANION TRANSPORTER 3 LIGAND; ORGANIC CATION TRANSPORTER 1; ORGANIC CATION TRANSPORTER 1 LIGAND; ORGANIC CATION TRANSPORTER 2; ORGANIC CATION TRANSPORTER 2 LIGAND; QUINIDINE; ROSIGLITAZONE; SILIBININ; TOLBUTAMIDE; UNCLASSIFIED DRUG; UNINDEXED DRUG; VERAPAMIL; ZIDOVUDINE; CARRIER PROTEIN; DRUG; ORGANIC ANION TRANSPORTER; PROTEIN BINDING;

EID: 84988661387     PISSN: 00223565     EISSN: 15210103     Source Type: Journal    
DOI: 10.1124/jpet.116.232660     Document Type: Article
Times cited : (61)

References (45)
  • 1
    • 0029815056 scopus 로고    scopus 로고
    • Order-restricted tests for stratified comparisons of binomial proportions
    • Agresti A and Coull BA (1996) Order-restricted tests for stratified comparisons of binomial proportions. Biometrics 52:1103-1111.
    • (1996) Biometrics , vol.52 , pp. 1103-1111
    • Agresti, A.1    Coull, B.A.2
  • 2
    • 71449118407 scopus 로고    scopus 로고
    • Interaction of organic cations with organic anion transporters
    • Ahn SY, Eraly SA, Tsigelny I, and Nigam SK (2009) Interaction of organic cations with organic anion transporters. J Biol Chem 284:31422-31430.
    • (2009) J Biol Chem , vol.284 , pp. 31422-31430
    • Ahn, S.Y.1    Eraly, S.A.2    Tsigelny, I.3    Nigam, S.K.4
  • 4
    • 69549103730 scopus 로고    scopus 로고
    • Toward a systems level understanding of organic anion and other multispecific drug transporters: A remote sensing and signaling hypothesis
    • Ahn SY and Nigam SK (2009) Toward a systems level understanding of organic anion and other multispecific drug transporters: a remote sensing and signaling hypothesis. Mol Pharmacol 76:481-490.
    • (2009) Mol Pharmacol , vol.76 , pp. 481-490
    • Ahn, S.Y.1    Nigam, S.K.2
  • 6
    • 84868583572 scopus 로고    scopus 로고
    • Potent inhibitors of human organic anion transporters 1 and 3 from clinical drug libraries: Discovery and molecular characterization
    • Duan P, Li S, Ai N, Hu L, Welsh WJ, and You G (2012) Potent inhibitors of human organic anion transporters 1 and 3 from clinical drug libraries: discovery and molecular characterization. Mol Pharm 9:3340-3346.
    • (2012) Mol Pharm , vol.9 , pp. 3340-3346
    • Duan, P.1    Li, S.2    Ai, N.3    Hu, L.4    Welsh, W.J.5    You, G.6
  • 7
    • 84930483089 scopus 로고    scopus 로고
    • Organic anion transporters and their implications in pharmacotherapy
    • Emami Riedmaier A, Nies AT, Schaeffeler E, and Schwab M (2012) Organic anion transporters and their implications in pharmacotherapy. Pharmacol Rev 64: 421-449.
    • (2012) Pharmacol Rev , vol.64 , pp. 421-449
    • Emami Riedmaier, A.1    Nies, A.T.2    Schaeffeler, E.3    Schwab, M.4
  • 8
    • 3042630508 scopus 로고    scopus 로고
    • Novel slc22 transporter homologs in fly, worm, and human clarify the phylogeny of organic anion and cation transporters
    • Eraly SA, Monte JC, and Nigam SK (2004) Novel slc22 transporter homologs in fly, worm, and human clarify the phylogeny of organic anion and cation transporters. Physiol Genomics 18:12-24.
    • (2004) Physiol Genomics , vol.18 , pp. 12-24
    • Eraly, S.A.1    Monte, J.C.2    Nigam, S.K.3
  • 10
    • 84876160043 scopus 로고    scopus 로고
    • Predicting substrates of the human breast cancer resistance protein using a support vector machine method
    • Hazai E, Hazai I, Ragueneau-Majlessi I, Chung SP, Bikadi Z, and Mao Q (2013) Predicting substrates of the human breast cancer resistance protein using a support vector machine method. BMC Bioinformatics 14:130.
    • (2013) BMC Bioinformatics , vol.14 , pp. 130
    • Hazai, E.1    Hazai, I.2    Ragueneau-Majlessi, I.3    Chung, S.P.4    Bikadi, Z.5    Mao, Q.6
  • 11
    • 84963705888 scopus 로고    scopus 로고
    • Multispecific Organic Cation Transporter 1 (OCT1) from Bos taurus Has High Affinity and Slow Binding Kinetics towards Prostaglandin E2
    • He X, Garza D, Nigam SK, and Chang G (2016) Multispecific Organic Cation Transporter 1 (OCT1) from Bos taurus Has High Affinity and Slow Binding Kinetics towards Prostaglandin E2. PLoS One 11:e0152969.
    • (2016) PLoS One , vol.11 , pp. e0152969
    • He, X.1    Garza, D.2    Nigam, S.K.3    Chang, G.4
  • 12
    • 78650514267 scopus 로고    scopus 로고
    • Prediction of fluoroquinolone-induced elevation in serum creatinine levels: A case of drug-endogenous substance interaction involving the inhibition of renal secretion
    • Imamura Y, Murayama N, Okudaira N, Kurihara A, Okazaki O, Izumi T, Inoue K, Yuasa H, Kusuhara H, and Sugiyama Y (2011) Prediction of fluoroquinolone-induced elevation in serum creatinine levels: a case of drug-endogenous substance interaction involving the inhibition of renal secretion. Clin Pharmacol Ther 89:81-88.
    • (2011) Clin Pharmacol Ther , vol.89 , pp. 81-88
    • Imamura, Y.1    Murayama, N.2    Okudaira, N.3    Kurihara, A.4    Okazaki, O.5    Izumi, T.6    Inoue, K.7    Yuasa, H.8    Kusuhara, H.9    Sugiyama, Y.10
  • 14
    • 33750821441 scopus 로고    scopus 로고
    • Olfactory mucosa-expressed organic anion transporter, Oat6, manifests high affinity interactions with odorant organic anions
    • Kaler G, Truong DM, Sweeney DE, Logan DW, Nagle M, Wu W, Eraly SA, and Nigam SK (2006) Olfactory mucosa-expressed organic anion transporter, Oat6, manifests high affinity interactions with odorant organic anions. Biochem Biophys Res Commun 351:872-876.
    • (2006) Biochem Biophys Res Commun , vol.351 , pp. 872-876
    • Kaler, G.1    Truong, D.M.2    De Sweeney3    Logan, D.W.4    Nagle, M.5    Wu, W.6    Eraly, S.A.7    Nigam, S.K.8
  • 15
    • 84861179635 scopus 로고    scopus 로고
    • Binding modes and pharmacophore modelling of thermolysin inhibitors
    • Khan MT, Wuxiuer Y, and Sylte I (2012) Binding modes and pharmacophore modelling of thermolysin inhibitors. Mini Rev Med Chem 12:515-533.
    • (2012) Mini Rev Med Chem , vol.12 , pp. 515-533
    • Khan, M.T.1    Wuxiuer, Y.2    Sylte, I.3
  • 16
    • 84923649614 scopus 로고    scopus 로고
    • Accept/decline decision module for the liver simulated allocation model
    • Kim SP, Gupta D, Israni AK, and Kasiske BL (2015) Accept/decline decision module for the liver simulated allocation model. Health Care Manage Sci 18:35-57.
    • (2015) Health Care Manage Sci , vol.18 , pp. 35-57
    • Kim, S.P.1    Gupta, D.2    Israni, A.K.3    Kasiske, B.L.4
  • 17
    • 84875181483 scopus 로고    scopus 로고
    • The SLC22 family with transporters of organic cations, anions and zwitterions
    • Koepsell H (2013) The SLC22 family with transporters of organic cations, anions and zwitterions. Mol Aspects Med 34:413-435.
    • (2013) Mol Aspects Med , vol.34 , pp. 413-435
    • Koepsell, H.1
  • 18
    • 79957453890 scopus 로고    scopus 로고
    • Elucidation of common pharmacophores from analysis of targeted metabolites transported by the multispecific drug transporter-Organic anion transporter1 (Oat1)
    • Kouznetsova VL, Tsigelny IF, Nagle MA, and Nigam SK (2011) Elucidation of common pharmacophores from analysis of targeted metabolites transported by the multispecific drug transporter-Organic anion transporter1 (Oat1). Bioorg Med Chem 19:3320-3340.
    • (2011) Bioorg Med Chem , vol.19 , pp. 3320-3340
    • Kouznetsova, V.L.1    Tsigelny, I.F.2    Nagle, M.A.3    Nigam, S.K.4
  • 19
    • 0030940999 scopus 로고    scopus 로고
    • Molecular cloning and characterization of NKT, a gene product related to the organic cation transporter family that is almost exclusively expressed in the kidney
    • Lopez-Nieto CE, You G, Bush KT, Barros EJ, Beier DR, and Nigam SK (1997) Molecular cloning and characterization of NKT, a gene product related to the organic cation transporter family that is almost exclusively expressed in the kidney. J Biol Chem 272:6471-6478.
    • (1997) J Biol Chem , vol.272 , pp. 6471-6478
    • Lopez-Nieto, C.E.1    You, G.2    Bush, K.T.3    Barros, E.J.4    Beier, D.R.5    Nigam, S.K.6
  • 21
    • 84988598646 scopus 로고    scopus 로고
    • Computational modeling to predict the functions and impact of drug transporters
    • Matsson P and Bergström CA (2015) Computational modeling to predict the functions and impact of drug transporters. In Silico Pharmacol 3:8.
    • (2015) Silico Pharmacol , vol.3 , pp. 8
    • Matsson, P.1    Bergström, C.A.2
  • 22
    • 78650936423 scopus 로고    scopus 로고
    • Analysis of three-dimensional systems for developing and mature kidneys clarifies the role of OAT1 and OAT3 in antiviral handling
    • Nagle MA, Truong DM, Dnyanmote AV, Ahn SY, Eraly SA, Wu W, and Nigam SK (2011) Analysis of three-dimensional systems for developing and mature kidneys clarifies the role of OAT1 and OAT3 in antiviral handling. J Biol Chem 286: 243-251.
    • (2011) J Biol Chem , vol.286 , pp. 243-251
    • Nagle, M.A.1    Truong, D.M.2    Dnyanmote, A.V.3    Ahn, S.Y.4    Eraly, S.A.5    Wu, W.6    Nigam, S.K.7
  • 23
    • 84873059003 scopus 로고    scopus 로고
    • Organic anion transport pathways in antiviral handling in choroid plexus in Oat1 (Slc22a6) and Oat3 (Slc22a8) deficient tissue
    • Nagle MA, Wu W, Eraly SA, and Nigam SK (2013) Organic anion transport pathways in antiviral handling in choroid plexus in Oat1 (Slc22a6) and Oat3 (Slc22a8) deficient tissue. Neurosci Lett 534:133-138.
    • (2013) Neurosci Lett , vol.534 , pp. 133-138
    • Nagle, M.A.1    Wu, W.2    Eraly, S.A.3    Nigam, S.K.4
  • 24
    • 84925285641 scopus 로고    scopus 로고
    • What do drug transporters really do?
    • Nigam SK (2015) What do drug transporters really do? Nat Rev Drug Discov 14: 29-44.
    • (2015) Nat Rev Drug Discov , vol.14 , pp. 29-44
    • Nigam, S.K.1
  • 25
    • 34547208011 scopus 로고    scopus 로고
    • Drug and toxicant handling by the OAT organic anion transporters in the kidney and other tissues
    • Nigam SK, Bush KT, and Bhatnagar V (2007) Drug and toxicant handling by the OAT organic anion transporters in the kidney and other tissues. Nat Clin Pract Nephrol 3:443-448.
    • (2007) Nat Clin Pract Nephrol , vol.3 , pp. 443-448
    • Nigam, S.K.1    Bush, K.T.2    Bhatnagar, V.3
  • 27
    • 84946733480 scopus 로고    scopus 로고
    • Handling of Drugs, Metabolites, and Uremic Toxins by Kidney Proximal Tubule Drug Transporters
    • Nigam SK, Wu W, Bush KT, Hoenig MP, Blantz RC, and Bhatnagar V (2015b) Handling of Drugs, Metabolites, and Uremic Toxins by Kidney Proximal Tubule Drug Transporters. Clin J Am Soc Nephrol 10:2039-2049.
    • (2015) Clin J Am Soc Nephrol , vol.10 , pp. 2039-2049
    • Nigam, S.K.1    Wu, W.2    Bush, K.T.3    Hoenig, M.P.4    Blantz, R.C.5    Bhatnagar, V.6
  • 29
    • 17644411713 scopus 로고    scopus 로고
    • Amino acids critical for substrate affinity of rat organic cation transporter 1 line the substrate binding region in a model derived from the tertiary structure of lactose permease
    • Popp C, Gorboulev V, Müller TD, Gorbunov D, Shatskaya N, and Koepsell H (2005) Amino acids critical for substrate affinity of rat organic cation transporter 1 line the substrate binding region in a model derived from the tertiary structure of lactose permease. Mol Pharmacol 67:1600-1611.
    • (2005) Mol Pharmacol , vol.67 , pp. 1600-1611
    • Popp, C.1    Gorboulev, V.2    Müller, T.D.3    Gorbunov, D.4    Shatskaya, N.5    Koepsell, H.6
  • 30
  • 31
    • 37849034064 scopus 로고    scopus 로고
    • Atomic property fields: Generalized 3D pharmacophoric potential for automated ligand superposition, pharmacophore elucidation and 3D QSAR
    • Totrov M (2008) Atomic property fields: generalized 3D pharmacophoric potential for automated ligand superposition, pharmacophore elucidation and 3D QSAR. Chem Biol Drug Des 71:15-27.
    • (2008) Chem Biol Drug Des , vol.71 , pp. 15-27
    • Totrov, M.1
  • 32
    • 43749115381 scopus 로고    scopus 로고
    • Multi-level analysis of organic anion transporters 1, 3, and 6 reveals major differences in structural determinants of antiviral discrimination
    • Truong DM, Kaler G, Khandelwal A, Swaan PW, and Nigam SK (2008) Multi-level analysis of organic anion transporters 1, 3, and 6 reveals major differences in structural determinants of antiviral discrimination. J Biol Chem 283: 8654-8663.
    • (2008) J Biol Chem , vol.283 , pp. 8654-8663
    • Truong, D.M.1    Kaler, G.2    Khandelwal, A.3    Swaan, P.W.4    Nigam, S.K.5
  • 36
    • 44949088665 scopus 로고    scopus 로고
    • Overlapping in vitro and in vivo specificities of the organic anion transporters OAT1 and OAT3 for loop and thiazide diuretics
    • Vallon V, Rieg T, Ahn SY, Wu W, Eraly SA, and Nigam SK (2008b) Overlapping in vitro and in vivo specificities of the organic anion transporters OAT1 and OAT3 for loop and thiazide diuretics. Am J Physiol Renal Physiol 294:F867-F873.
    • (2008) Am J Physiol Renal Physiol , vol.294 , pp. F867-F873
    • Vallon, V.1    Rieg, T.2    Ahn, S.Y.3    Wu, W.4    Eraly, S.A.5    Nigam, S.K.6
  • 37
    • 35348889668 scopus 로고    scopus 로고
    • Organic anion transporter 3 (Oat3/Slc22a8) knockout mice exhibit altered clearance and distribution of penicillin G
    • Vanwert AL, Bailey RM, and Sweet DH (2007) Organic anion transporter 3 (Oat3/Slc22a8) knockout mice exhibit altered clearance and distribution of penicillin G. Am J Physiol Renal Physiol 293:F1332-F1341.
    • (2007) Am J Physiol Renal Physiol , vol.293 , pp. F1332-F1341
    • Vanwert, A.L.1    Bailey, R.M.2    Sweet, D.H.3
  • 38
    • 45749158039 scopus 로고    scopus 로고
    • Organic anion transporter 3 (oat3/slc22a8) interacts with carboxyfluoroquinolones, and deletion increases systemic exposure to ciprofloxacin
    • Vanwert AL, Srimaroeng C, and Sweet DH (2008) Organic anion transporter 3 (oat3/slc22a8) interacts with carboxyfluoroquinolones, and deletion increases systemic exposure to ciprofloxacin. Mol Pharmacol 74:122-131.
    • (2008) Mol Pharmacol , vol.74 , pp. 122-131
    • Vanwert, A.L.1    Srimaroeng, C.2    Sweet, D.H.3
  • 39
    • 79959742759 scopus 로고    scopus 로고
    • P-glycoprotein substrate models using support vector machines based on a comprehensive data set
    • Wang Z, Chen Y, Liang H, Bender A, Glen RC, and Yan A (2011) P-glycoprotein substrate models using support vector machines based on a comprehensive data set. J Chem Inf Model 51:1447-1456.
    • (2011) J Chem Inf Model , vol.51 , pp. 1447-1456
    • Wang, Z.1    Chen, Y.2    Liang, H.3    Bender, A.4    Glen, R.C.5    Yan, A.6
  • 40
    • 79958226930 scopus 로고    scopus 로고
    • Untargeted metabolomics identifies enterobiome metabolites and putative uremic toxins as substrates of organic anion transporter 1 (Oat1)
    • Wikoff WR, Nagle MA, Kouznetsova VL, Tsigelny IF, and Nigam SK (2011) Untargeted metabolomics identifies enterobiome metabolites and putative uremic toxins as substrates of organic anion transporter 1 (Oat1). J Proteome Res 10:2842-2851.
    • (2011) J Proteome Res , vol.10 , pp. 2842-2851
    • Wikoff, W.R.1    Nagle, M.A.2    Kouznetsova, V.L.3    Tsigelny, I.F.4    Nigam, S.K.5
  • 41
    • 67650266683 scopus 로고    scopus 로고
    • Analysis of a large cluster of SLC22 transporter genes, including novel USTs, reveals species-specific amplification of subsets of family members
    • Wu W, Baker ME, Eraly SA, Bush KT, and Nigam SK (2009) Analysis of a large cluster of SLC22 transporter genes, including novel USTs, reveals species-specific amplification of subsets of family members. Physiol Genomics 38:116-124.
    • (2009) Physiol Genomics , vol.38 , pp. 116-124
    • Wu, W.1    Baker, M.E.2    Eraly, S.A.3    Bush, K.T.4    Nigam, S.K.5
  • 42
    • 84946739389 scopus 로고    scopus 로고
    • Shared Ligands between Organic Anion Transporters (OAT1 and OAT6) and Odorant Receptors
    • Wu W, Bush KT, Liu HC, Zhu C, Abagyan R, and Nigam SK (2015) Shared Ligands Between Organic Anion Transporters (OAT1 and OAT6) and Odorant Receptors. Drug Metab Dispos 43:1855-1863.
    • (2015) Drug Metab Dispos , vol.43 , pp. 1855-1863
    • Wu, W.1    Bush, K.T.2    Liu, H.C.3    Zhu, C.4    Abagyan, R.5    Nigam, S.K.6
  • 43
    • 79954998791 scopus 로고    scopus 로고
    • Remote communication through solute carriers and ATP binding cassette drug transporter pathways: An update on the remote sensing and signaling hypothesis
    • Wu W, Dnyanmote AV, and Nigam SK (2011) Remote communication through solute carriers and ATP binding cassette drug transporter pathways: an update on the remote sensing and signaling hypothesis. Mol Pharmacol 79:795-805.
    • (2011) Mol Pharmacol , vol.79 , pp. 795-805
    • Wu, W.1    Dnyanmote, A.V.2    Nigam, S.K.3
  • 44
    • 84884698943 scopus 로고    scopus 로고
    • Multispecific drug transporter Slc22a8 (Oat3) regulates multiple metabolic and signaling pathways
    • Wu W, Jamshidi N, Eraly SA, Liu HC, Bush KT, Palsson BO, and Nigam SK (2013) Multispecific drug transporter Slc22a8 (Oat3) regulates multiple metabolic and signaling pathways. Drug Metab Dispos 41:1825-1834.
    • (2013) Drug Metab Dispos , vol.41 , pp. 1825-1834
    • Wu, W.1    Jamshidi, N.2    Eraly, S.A.3    Liu, H.C.4    Bush, K.T.5    Palsson, B.O.6    Nigam, S.K.7
  • 45
    • 84951128933 scopus 로고    scopus 로고
    • Evolutionary analysis and classification of OATs, OCTs, OCTNs, and other SLC22 transporters: Structure-function implications and analysis of sequence motifs
    • Zhu C, Nigam KB, Date RC, Bush KT, Springer SA, Saier MH, Jr, Wu W, and Nigam SK (2015) Evolutionary analysis and classification of OATs, OCTs, OCTNs, and other SLC22 transporters: structure-function implications and analysis of sequence motifs. PLoS One 10:e0140569.
    • (2015) PLoS One , vol.10 , pp. e0140569
    • Zhu, C.1    Nigam, K.B.2    Date, R.C.3    Bush, K.T.4    Springer, S.A.5    Saier, M.H.6    Wu, W.7    Nigam, S.K.8


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