메뉴 건너뛰기




Volumn 38, Issue 2, 2009, Pages 116-124

Analysis of a large cluster of SLC22 transporter genes, including novel USTs, reveals species-specific amplification of subsets of family members

Author keywords

Copy number variation; Evolution; Organic anion transporter

Indexed keywords

ANION; ARGININE;

EID: 67650266683     PISSN: 10948341     EISSN: 15312267     Source Type: Journal    
DOI: 10.1152/physiolgenomics.90309.2008     Document Type: Article
Times cited : (25)

References (29)
  • 1
    • 0030784438 scopus 로고    scopus 로고
    • An artificial intelligence approach to motif discovery in protein sequences: Application to steriod dehydrogenases
    • Bailey TL, Baker ME, Elkan CP. An artificial intelligence approach to motif discovery in protein sequences: application to steriod dehydrogenases. J Steroid Biochem Mol Biol 62: 29-44, 1997.
    • (1997) J Steroid Biochem Mol Biol , vol.62 , pp. 29-44
    • Bailey, T.L.1    Baker, M.E.2    Elkan, C.P.3
  • 2
    • 2442700344 scopus 로고    scopus 로고
    • Rat and mouse differences in gender-predominant expression of organic anion transporter (Oat1-3; Slc22a6-8) mRNA levels
    • Buist SC, Klaassen CD. Rat and mouse differences in gender-predominant expression of organic anion transporter (Oat1-3; Slc22a6-8) mRNA levels. Drug Metab Dispos 32: 620-625, 2004.
    • (2004) Drug Metab Dispos , vol.32 , pp. 620-625
    • Buist, S.C.1    Klaassen, C.D.2
  • 3
    • 0038728565 scopus 로고    scopus 로고
    • Transport of organic anions across the basolateral membrane of proximal tubule cells
    • Burckhardt BC, Burckhardt G. Transport of organic anions across the basolateral membrane of proximal tubule cells. Rev Physiol Biochem Pharmacol 146: 95-158, 2003.
    • (2003) Rev Physiol Biochem Pharmacol , vol.146 , pp. 95-158
    • Burckhardt, B.C.1    Burckhardt, G.2
  • 5
    • 0037427506 scopus 로고    scopus 로고
    • Organic anion and cation transporters occur in pairs of similar and similarly expressed genes
    • Eraly SA, Hamilton BA, Nigam SK. Organic anion and cation transporters occur in pairs of similar and similarly expressed genes. Biochem Biophys Res Commun 300: 333-342, 2003.
    • (2003) Biochem Biophys Res Commun , vol.300 , pp. 333-342
    • Eraly, S.A.1    Hamilton, B.A.2    Nigam, S.K.3
  • 6
    • 3042630508 scopus 로고    scopus 로고
    • Novel slc22 transporter homologs in fly, worm, and human clarify the phylogeny of organic anion and cation transporters
    • Eraly SA, Monte JC, Nigam SK. Novel slc22 transporter homologs in fly, worm, and human clarify the phylogeny of organic anion and cation transporters. Physiol Genomics 18: 12-24, 2004.
    • (2004) Physiol Genomics , vol.18 , pp. 12-24
    • Eraly, S.A.1    Monte, J.C.2    Nigam, S.K.3
  • 7
    • 0036401507 scopus 로고    scopus 로고
    • Novel human cDNAs homologous to Drosophila Orct and mammalian carnitine transporters
    • Eraly SA, Nigam SK. Novel human cDNAs homologous to Drosophila Orct and mammalian carnitine transporters. Biochem Biophys Res Commun 297: 1159-1166, 2002.
    • (2002) Biochem Biophys Res Commun , vol.297 , pp. 1159-1166
    • Eraly, S.A.1    Nigam, S.K.2
  • 10
    • 0028063302 scopus 로고
    • Drug excretion mediated by a new prototype of polyspecific transporter
    • Grundemann D, Gorboulev V, Gambaryan S, Veyhl M, Koepsell H. Drug excretion mediated by a new prototype of polyspecific transporter. Nature 372: 549-552, 1994.
    • (1994) Nature , vol.372 , pp. 549-552
    • Grundemann, D.1    Gorboulev, V.2    Gambaryan, S.3    Veyhl, M.4    Koepsell, H.5
  • 11
    • 17144434313 scopus 로고    scopus 로고
    • Hidden Markov model analysis of motifs in steroid dehydrogenases and their homologs
    • Grundy WN, Bailey TL, Elkan CP, Baker ME. Hidden Markov model analysis of motifs in steroid dehydrogenases and their homologs. Biochem Biophys Res Commun 231: 760-766, 1997.
    • (1997) Biochem Biophys Res Commun , vol.231 , pp. 760-766
    • Grundy, W.N.1    Bailey, T.L.2    Elkan, C.P.3    Baker, M.E.4
  • 12
    • 35548966750 scopus 로고    scopus 로고
    • Identification of six putative human transporters with structural similarity to the drug transporter SLC22 family
    • Jacobsson JA, Haitina T, Lindblom J, Fredriksson R. Identification of six putative human transporters with structural similarity to the drug transporter SLC22 family. Genomics, 2007.
    • (2007) Genomics
    • Jacobsson, J.A.1    Haitina, T.2    Lindblom, J.3    Fredriksson, R.4
  • 13
    • 34547196949 scopus 로고    scopus 로고
    • Structural variation governs substrate specificity for organic anion transporter (OAT) homologs. Potential remote sensing by OAT family members
    • Kaler G, Truong DM, Khandelwal A, Nagle M, Eraly SA, Swaan PW, Nigam SK. Structural variation governs substrate specificity for organic anion transporter (OAT) homologs. Potential remote sensing by OAT family members. J Biol Chem 282: 23841-23853, 2007.
    • (2007) J Biol Chem , vol.282 , pp. 23841-23853
    • Kaler, G.1    Truong, D.M.2    Khandelwal, A.3    Nagle, M.4    Eraly, S.A.5    Swaan, P.W.6    Nigam, S.K.7
  • 14
    • 0030940999 scopus 로고    scopus 로고
    • Molecular cloning and characterization of NKT, a gene product related to the organic cation transporter family that is almost exclusively expressed in the kidney
    • Lopez-Nieto CE, You G, Bush KT, Barros EJ, Beier DR, Nigam SK. Molecular cloning and characterization of NKT, a gene product related to the organic cation transporter family that is almost exclusively expressed in the kidney. J Biol Chem 272: 6471-6478, 1997.
    • (1997) J Biol Chem , vol.272 , pp. 6471-6478
    • Lopez-Nieto, C.E.1    You, G.2    Bush, K.T.3    Barros, E.J.4    Beier, D.R.5    Nigam, S.K.6
  • 16
    • 33846010171 scopus 로고    scopus 로고
    • A three-dimensional model of human organic anion transporter 1: Aromatic amino acids required for substrate transport
    • Perry JL, Dembla-Rajpal N, Hall LA, Pritchard JB. A three-dimensional model of human organic anion transporter 1: aromatic amino acids required for substrate transport. J Biol Chem 281: 38071-38079, 2006.
    • (2006) J Biol Chem , vol.281 , pp. 38071-38079
    • Perry, J.L.1    Dembla-Rajpal, N.2    Hall, L.A.3    Pritchard, J.B.4
  • 17
    • 17644411713 scopus 로고    scopus 로고
    • Amino acids critical for substrate affinity of rat organic cation transporter 1 line the substrate binding region in a model derived from the tertiary structure of lactose permease
    • Popp C, Gorboulev V, Muller TD, Gorbunov D, Shatskaya N, Koepsell H. Amino acids critical for substrate affinity of rat organic cation transporter 1 line the substrate binding region in a model derived from the tertiary structure of lactose permease. Mol Pharmacol 67: 1600-1611, 2005.
    • (2005) Mol Pharmacol , vol.67 , pp. 1600-1611
    • Popp, C.1    Gorboulev, V.2    Muller, T.D.3    Gorbunov, D.4    Shatskaya, N.5    Koepsell, H.6
  • 18
    • 33751329250 scopus 로고    scopus 로고
    • Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, Andrews TD, Fiegler H, Shapero MH, Carson AR, Chen W, Cho EK, Dallaire S, Freeman JL, Gonzalez JR, Gratacos M, Huang J, Kalaitzopoulos D, Komura D, MacDonald JR, Marshall CR, Mei R, Montgomery L, Nishimura K, Okamura K, Shen F, Somerville MJ, Tchinda J, Valsesia A, Woodwark C, Yang F, Zhang J, Zerjal T, Zhang J, Armengol L, Conrad DF, Estivill X, Tyler-Smith C, Carter NP, Aburatani H, Lee C, Jones KW, Scherer SW, Hurles ME. Global variation in copy number in the human genome. Nature 444: 444-454, 2006.
    • Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, Andrews TD, Fiegler H, Shapero MH, Carson AR, Chen W, Cho EK, Dallaire S, Freeman JL, Gonzalez JR, Gratacos M, Huang J, Kalaitzopoulos D, Komura D, MacDonald JR, Marshall CR, Mei R, Montgomery L, Nishimura K, Okamura K, Shen F, Somerville MJ, Tchinda J, Valsesia A, Woodwark C, Yang F, Zhang J, Zerjal T, Zhang J, Armengol L, Conrad DF, Estivill X, Tyler-Smith C, Carter NP, Aburatani H, Lee C, Jones KW, Scherer SW, Hurles ME. Global variation in copy number in the human genome. Nature 444: 444-454, 2006.
  • 19
    • 12344321851 scopus 로고    scopus 로고
    • Predicting the three-dimensional structure of the human facilitative glucose transporter glut1 by a novel evolutionary homology strategy: Insights on the molecular mechanism of substrate migration, and binding sites for glucose and inhibitory molecules
    • Salas-Burgos A, Iserovich P, Zuniga F, Vera JC, Fischbarg J. Predicting the three-dimensional structure of the human facilitative glucose transporter glut1 by a novel evolutionary homology strategy: insights on the molecular mechanism of substrate migration, and binding sites for glucose and inhibitory molecules. Biophys J 87: 2990-2999, 2004.
    • (2004) Biophys J , vol.87 , pp. 2990-2999
    • Salas-Burgos, A.1    Iserovich, P.2    Zuniga, F.3    Vera, J.C.4    Fischbarg, J.5
  • 20
    • 34247400616 scopus 로고    scopus 로고
    • Novel liver-specific organic anion transporter OAT7 that operates the exchange of sulfate conjugates for short chain fatty acid butyrate
    • Shin HJ, Anzai N, Enomoto A, He X, Kim do K, Endou H, Kanai Y. Novel liver-specific organic anion transporter OAT7 that operates the exchange of sulfate conjugates for short chain fatty acid butyrate. Hepatology 45: 1046-1055, 2007.
    • (2007) Hepatology , vol.45 , pp. 1046-1055
    • Shin, H.J.1    Anzai, N.2    Enomoto, A.3    He, X.4    Kim do, K.5    Endou, H.6    Kanai, Y.7
  • 21
    • 0034817065 scopus 로고    scopus 로고
    • Isolation of a family of organic anion transporters from human liver and kidney
    • Sun W, Wu RR, van Poelje PD, Erion MD. Isolation of a family of organic anion transporters from human liver and kidney. Biochem Biophys Res Commun 283: 417-422, 2001.
    • (2001) Biochem Biophys Res Commun , vol.283 , pp. 417-422
    • Sun, W.1    Wu, R.R.2    van Poelje, P.D.3    Erion, M.D.4
  • 23
    • 33644499212 scopus 로고    scopus 로고
    • Organic anion and cation transporter expression and function during embryonic kidney development and in organ culture models
    • Sweet DH, Eraly SA, Vaughn DA, Bush KT, Nigam SK. Organic anion and cation transporter expression and function during embryonic kidney development and in organ culture models. Kidney Int 69: 837-845, 2006.
    • (2006) Kidney Int , vol.69 , pp. 837-845
    • Sweet, D.H.1    Eraly, S.A.2    Vaughn, D.A.3    Bush, K.T.4    Nigam, S.K.5
  • 24
    • 0037178852 scopus 로고    scopus 로고
    • Impaired organic anion transport in kidney and choroid plexus of organic anion transporter 3 [Oat3 (Slc22a8)] knockout mice
    • Sweet DH, Miller DS, Pritchard JB, Fujiwara Y, Beier DR, Nigam SK. Impaired organic anion transport in kidney and choroid plexus of organic anion transporter 3 [Oat3 (Slc22a8)] knockout mice. J Biol Chem 277: 26934-26943, 2002.
    • (2002) J Biol Chem , vol.277 , pp. 26934-26943
    • Sweet, D.H.1    Miller, D.S.2    Pritchard, J.B.3    Fujiwara, Y.4    Beier, D.R.5    Nigam, S.K.6
  • 25
    • 0032997735 scopus 로고    scopus 로고
    • Mutations of OCTN2, an organic cation/carnitine transporter, lead to deficient cellular carnitine uptake in primary carnitine deficiency
    • Tang NL, Ganapathy V, Wu X, Hui J, Seth P, Yuen PM, Wanders RJ, Fok TF, Hjelm NM. Mutations of OCTN2, an organic cation/carnitine transporter, lead to deficient cellular carnitine uptake in primary carnitine deficiency. Hum Mol Genet 8: 655-660, 1999.
    • (1999) Hum Mol Genet , vol.8 , pp. 655-660
    • Tang, N.L.1    Ganapathy, V.2    Wu, X.3    Hui, J.4    Seth, P.5    Yuen, P.M.6    Wanders, R.J.7    Fok, T.F.8    Hjelm, N.M.9
  • 26
    • 43749115381 scopus 로고    scopus 로고
    • Multi-level analysis of organic anion transporters 1, 3, and 6 reveals major differences in structural determinants of antiviral discrimination
    • Truong DM, Kaler G, Khandelwal A, Swaan PW, Nigam SK. Multi-level analysis of organic anion transporters 1, 3, and 6 reveals major differences in structural determinants of antiviral discrimination. J Biol Chem 283: 8654-8663, 2008.
    • (2008) J Biol Chem , vol.283 , pp. 8654-8663
    • Truong, D.M.1    Kaler, G.2    Khandelwal, A.3    Swaan, P.W.4    Nigam, S.K.5
  • 27
    • 0033515017 scopus 로고    scopus 로고
    • Mutations in the organic cation/carnitine transporter OCTN2 in primary carnitine deficiency
    • Wang Y, Ye J, Ganapathy V, Longo N. Mutations in the organic cation/carnitine transporter OCTN2 in primary carnitine deficiency. Proc Natl Acad Sci USA 96: 2356-2360, 1999.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 2356-2360
    • Wang, Y.1    Ye, J.2    Ganapathy, V.3    Longo, N.4
  • 28
    • 3242707822 scopus 로고    scopus 로고
    • Identification and functional assessment of the novel murine organic anion transporter Oat5 (Slc22a19) expressed in kidney
    • Youngblood GL, Sweet DH. Identification and functional assessment of the novel murine organic anion transporter Oat5 (Slc22a19) expressed in kidney. Am J Physiol Renal Physiol 287: F236-F244, 2004.
    • (2004) Am J Physiol Renal Physiol , vol.287
    • Youngblood, G.L.1    Sweet, D.H.2
  • 29
    • 27144555426 scopus 로고    scopus 로고
    • A conserved glutamate residue in transmembrane helix 10 influences substrate specificity of rabbit OCT2 (SLC22A2)
    • Zhang X, Shirahatti NV, Mahadevan D, Wright SH. A conserved glutamate residue in transmembrane helix 10 influences substrate specificity of rabbit OCT2 (SLC22A2). J Biol Chem 280: 34813-34822, 2005.
    • (2005) J Biol Chem , vol.280 , pp. 34813-34822
    • Zhang, X.1    Shirahatti, N.V.2    Mahadevan, D.3    Wright, S.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.