Configuration of the catalytic GIY-YIG domain of intron endonuclease I-Tevl: Coincidence of computational and molecular findings

Nucleic Acids Research

Volumn 27, Issue 10, 1999, Pages 2115-2125

  Kowalski, Joseph C ^a   Belfort, Marlene ^a   Stapleton, Michelle A ^a   Holpert, Mathias ^a   Dansereau, John T ^a   Pietrokovski, Shmuel ^b,c   Baxter, Susan M ^a   Derbyshire, Victoria ^a  

^a STATE UNIVERSITY OF NEW YORK   (United States)

^b Fred Hutchinson Cancer Research Center   (United States)

^c WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; DNA BINDING PROTEIN; ENDONUCLEASE; GLUTAMIC ACID;

ALPHA HELIX; AMINO TERMINAL SEQUENCE; ARTICLE; BETA CHAIN; CARBOXY TERMINAL SEQUENCE; INTRON; MOLECULAR BIOLOGY; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING;

AMINO ACID SEQUENCE; CATALYTIC DOMAIN; CONSERVED SEQUENCE; ENDODEOXYRIBONUCLEASES; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; SEQUENCE DELETION; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0033562780     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.10.2115     Document Type: Article

References (54)

1. Mueller, J. E., Bryk, M., Loizos, N. and Belfort, M. (1993) In Linn, S. M., Lloyd, R. S. and Roberts, R. J. (eds), Nucleases, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 111-143.
2. Belfort, M. and Perlman, P. S. (1995) J. Biol. Chem., 270, 30237-30240.
3. Belfort, M. and Roberts, R. J. (1997) Nucleic Acids Res., 25, 3379-3388.
4. Michel, F. and Dujon, B. (1986) Cell, 46, 323.
5. Bryk, M., Quirk, S. M., Mueller, J. E., Loizos, N., Lawrence, C. and Belfort, M. (1993) EMBO J., 12, 2141-2149.
6. Mueller, J. E., Smith, D., Bryk, M. and Belfort, M. (1995) EMBO J., 14, 5724-5735.
7. Bryk, M., Belisle, M., Mueller, J. E. and Belfort, M. (1995) J. Mol. Biol., 247, 197-210.
8. Derbyshire, V., Kowalski, J. C., Dansereau, J. T., Hauer, C. R. and Belfort, M. (1997) J. Mol. Biol., 265, 494-506.
9. Li, L., Wu, L. P. and Chandrasegaran, S. (1992) Proc. Natl Acad. Sci. USA, 89, 4275-4279.
10. Colandene, J. D. and Topal, M. D. (1998) Proc. Natl Acad. Sci. USA, 95, 3531-3536.
11. Bell-Pedersen, D., Quirk, S. M., Bryk, M. and Belfort, M. (1991) Proc. Natl Acad. Sci. USA, 88, 7719-7723.
12. Henikoff, S., Henikoff, J. G., Alford, W. J. and Pietrokovski, S. (1995) Gene, 163, 17-26.
13. Bailey, T. L. and Elkan, C. (1994) In Anonymous Proceedings of Second International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Menlo Park, CA, pp. 28-36.
14. Schuler, G. D., Altschul, S. F. and Lipman, D. J. (1991) Proteins, 9, 180-190.
15. Pietrokovski, S. (1994) Protein Sci., 3, 2340-2350.
16. Pietrokovski, S. (1998) Protein Sci., 7, 64-71.
17. Studier, F. W., Rosenberg, A. H., Dunn, J. J. and Dubendorff, J. W. (1990) Methods Enzymol., 185, 60-89.
18. Muchmore, D. C., McIntosh, L. P., Russell, C. B., Anderson, D. E. and Dahlquist, F. W. (1989) Methods Enzymol., 177, 44-73.
19. Bax, A., Ikura, M., Kay, L. E., Torchia, D. A. and Tschudin, R. (1990) J. Magn. Reson., 86, 304-318.
20. Norwood, T. J., Boyd, J., Heritage, J. E., Soffe, N. and Campbell, I. D. (1990) J. Magn. Reson., 87, 488-501.
21. Kay, L. E., Torchia, D. A. and Bax, A. (1989) Biochemistry, 28, 8972-8979.
22. Marion, D., Driscoll, P. C., Kay, L. E., Wingfield, P. T., Bax, A., Gronenborn, A. M. and Clore, G. M. (1989) Biochemistry, 28, 6150-6156.
23. Zuiderweg, E. R. P. and Fesik, S. W. (1989) Biochemistry, 28, 2387-2391.
24. Cavanagh, J. and Rance, M. (1992) J. Magn. Reson., 96, 670-678.
25. Billeter, M., Neri, D., Otting, G. D., Qian, Y. Q. and Wuthrich, K. (1992) J. Biomol. NMR, 2, 257-274.
26. Neri, D., Otting, G. and Wuthrich, K. (1990) J. Am. Chem. Soc., 112, 3663-3665.
27. Pietrokovski, S., Henikoff, J. G. and Henikoff, S. (1998) Trends Genet., 14, 162-163.
28. Wuthrich, K. (1986) NMR of Proteins and Nucleic Acids. John Wiley & Sons, Inc., New York, NY.
29. Wishart, D. S., Sykes, B. D. and Richards, F. M. (1992) Biochemistry, 31, 1647-1651.
30. Wishart, D. S., Bigam, C. G., Holm, A., Hodges, R. S. and Sykes, B. D. (1995) J. Biomol. NMR, 5, 67-81.
31. Williamson, M. P. and Asakura, T. (1997) In Reid, D. G. (ed.), Methods in Molecular Biology. Protein NMR Techniques. Humana Press, Inc., Totowa, NJ.
32. Linn, J. J. and Sancar, A. (1991) Proc. Natl Acad. Sci. USA, 88, 6824-6828.
33. Kelman, Z. and O'Donnell, M. (1995) Annu. Rev. Biochem., 64, 171-200.
34. Sharma, M., Ellis, R. L. and Hinton, D. M. (1992) Proc. Natl Acad. Sci. USA, 89, 6658-6662.
35. Newman, M., Strzelecka, T., Dorner, L. F., Schildkraut, I. and Aggarwal, A. K. (1995) Science, 269, 656-663.
36. Jordan, S. R. and Pabo, C. O. (1988) Science, 242, 893-899.
37. Yang, W. and Steitz, T. A. (1995) Cell, 82, 193-207.
38. Grindley, N. G. F. (1994) Nucleic Acids Mol. Biol., 8, 236-267.
39. Gerlt, J. A. (1993) In Linn, S. M., Lloyd, R. S. and Roberts, R. J. (eds), Nucleases. 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 1-34.
40. Steyaert, J., Hallenga, K., Wyns, L. and Stanssens, P. (1990) Biochemistry, 29, 9064-9072.
41. Heydenreich, A., Koellner, G., Choe, H., Cordes, F., Kisker, C., Schindelin, H., Adamiak, R., Hahn, U. and Saenger, W. (1993) Eur. J. Biochem., 218, 1005-1012.
42. Beese, L. and Steitz, J. A. (1991) EMBO J., 10, 25-33.
43. Lahm, A. and Suck, D. (1991) J. Mol. Biol., 221, 645-667.
44. Weston, S. A., Lahm, A. and Suck, D. (1992) J. Mol. Biol., 226, 1237-1256.
45. Duan, X., Gimble, F. S. and Quiocho, F. A. (1997) Cell, 89, 555-564.
46. Heath, P. J., Stephens, K. M., Monnat, R. J., Jr and Stoddard, B. L. (1997) Nature Struct. Biol., 4, 468-476.
47. Jurica, M. S., Monnat, R. J., Jr and Stoddard, B. L. (1998) Mol. Cell, 2, 469-476.
48. Flick, K. E., Jurica, M. S., Monnat, R. J., Jr and Stoddard, B. L. (1998) Nature, 394, 96-101.
49. Silva, G., Dalgaard, J. Z., Belfort, M. and Van Roey, P. (1999) J. Mol. Biol., 286, 1123-1136.
50. Oubridge, C., Ito, N., Evans, P. R., Teo, C. H. and Nagai, K. (1994) Nature, 372, 432-438.
51. Allain, F. H., Howe, P. W., Neuhaus, D. and Varani, G. (1997) EMBO J., 16, 5764-5772.
52. Connolly, K. M., Wojiciak, J. M. and Clubb, R. T. (1998) Nature Struct. Biol., 5, 546-550.
53. Allen, M. D., Yamasaki, K., Ohme-Takagi, M., Tateno, M. and Suzuki, M. (1998) EMBO J., 17, 5484-5496.
54. Schneider, T. D. and Stephens, R. M. (1990) Nucleic Acids Res., 18, 6097-6100.