메뉴 건너뛰기




Volumn 37, Issue 10, 2016, Pages 1060-1073

MicroRNA Genetic Variation: From Population Analysis to Functional Implications of Three Allele Variants Associated with Cancer

Author keywords

cancer; functional allele variant; genetic association; microRNA

Indexed keywords

ATP BINDING CASSETTE TRANSPORTER 2; C1Q TUMOR NECROSIS FACTOR RELATED PROTEIN 3; CADHERIN 1; CELL ADHESION MOLECULE; CELL ADHESION MOLECULE L1 LIKE PROTEIN; CLH PROTEIN; FIBROBLAST GROWTH FACTOR RECEPTOR 1; HSA MIR 146A 3P; HSA MIR 196A 3P; HSA MIR 449C; HSA MIR 499A 3P; HSA MIR 499B 5P; INTERLEUKIN 24; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DS4; KIT PROTEIN; MICRORNA; MICRORNA499A; PROTEIN; PROTEIN P53; RIBONUCLEOTIDE REDUCTASE M2 B; TELOMERASE REVERSE TRANSCRIPTASE; TRANSCRIPTOME; UNCLASSIFIED DRUG; UVOMORULIN;

EID: 84987719155     PISSN: 10597794     EISSN: 10981004     Source Type: Journal    
DOI: 10.1002/humu.23045     Document Type: Article
Times cited : (12)

References (72)
  • 1
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • Akey JM, Zhang G, Zhang K, Jin L, Shriver MD. 2002. Interrogating a high-density SNP map for signatures of natural selection. Genome Res 12:1805–1814.
    • (2002) Genome Res , vol.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3    Jin, L.4    Shriver, M.D.5
  • 2
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population scale sequencing
    • Altshuler D, Lander E, Ambrogio L. 2010. A map of human genome variation from population scale sequencing. Nature 476:1061–1073.
    • (2010) Nature , vol.476 , pp. 1061-1073
    • Altshuler, D.1    Lander, E.2    Ambrogio, L.3
  • 3
    • 79959425811 scopus 로고    scopus 로고
    • Specific and sensitive quantitative RT-PCR of miRNAs with DNA primers
    • Balcells I, Cirera S, Busk PK. 2011. Specific and sensitive quantitative RT-PCR of miRNAs with DNA primers. BMC Biotechnol 11:70.
    • (2011) BMC Biotechnol , vol.11 , pp. 70
    • Balcells, I.1    Cirera, S.2    Busk, P.K.3
  • 4
    • 39749136156 scopus 로고    scopus 로고
    • Natural selection has driven population differentiation in modern humans
    • Barreiro LB, Laval G, Quach H, Patin E, Quintana-Murci L. 2008. Natural selection has driven population differentiation in modern humans. Nat Genet 40:340–345.
    • (2008) Nat Genet , vol.40 , pp. 340-345
    • Barreiro, L.B.1    Laval, G.2    Quach, H.3    Patin, E.4    Quintana-Murci, L.5
  • 5
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel DP. 2014. MicroRNAs: target recognition and regulatory functions. Cell 136:215–233.
    • (2014) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 6
    • 7444265760 scopus 로고    scopus 로고
    • The changing global patterns of female breast cancer incidence and mortality
    • Bray F, McCarron P, Parkin DM. 2004. The changing global patterns of female breast cancer incidence and mortality. Breast Cancer Res 6:229–239.
    • (2004) Breast Cancer Res , vol.6 , pp. 229-239
    • Bray, F.1    McCarron, P.2    Parkin, D.M.3
  • 7
    • 84892932112 scopus 로고    scopus 로고
    • A tool for design of primers for microRNA-specific quantitative RT-qPCR
    • Busk PK. 2014. A tool for design of primers for microRNA-specific quantitative RT-qPCR. BMC Bioinformatics 15:29.
    • (2014) BMC Bioinformatics , vol.15 , pp. 29
    • Busk, P.K.1
  • 9
    • 84923915359 scopus 로고    scopus 로고
    • Meta-analysis of Hsa-mir-499 polymorphism (rs3746444) for cancer risk: evidence from 31 case-control studies
    • Chen C, Yang S, Chaugai S, Wang Y, Wang D. 2014. Meta-analysis of Hsa-mir-499 polymorphism (rs3746444) for cancer risk: evidence from 31 case-control studies. BMC Med Genet 15:126.
    • (2014) BMC Med Genet , vol.15 , pp. 126
    • Chen, C.1    Yang, S.2    Chaugai, S.3    Wang, Y.4    Wang, D.5
  • 10
    • 78751691598 scopus 로고    scopus 로고
    • MicroRNA-196: critical roles and clinical applications in development and cancer
    • Chen C, Zhang Y, Zhang L, Weakley SM, Yao Q. 2011. MicroRNA-196: critical roles and clinical applications in development and cancer. J Cell Mol Med 15:14–23.
    • (2011) J Cell Mol Med , vol.15 , pp. 14-23
    • Chen, C.1    Zhang, Y.2    Zhang, L.3    Weakley, S.M.4    Yao, Q.5
  • 14
    • 34447319406 scopus 로고    scopus 로고
    • Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA
    • Duan R, Pak CH, Jin P. 2007. Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA. Hum Mol Genet 16:1124–1131.
    • (2007) Hum Mol Genet , vol.16 , pp. 1124-1131
    • Duan, R.1    Pak, C.H.2    Jin, P.3
  • 15
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs—microRNAs with a role in cancer
    • Esquela-Kerscher A, Slack FJ. 2006. Oncomirs—microRNAs with a role in cancer. Nat Rev Cancer 6:259–269.
    • (2006) Nat Rev Cancer , vol.6 , pp. 259-269
    • Esquela-Kerscher, A.1    Slack, F.J.2
  • 19
    • 84916594952 scopus 로고    scopus 로고
    • The association between miR-146a gene rs2910164 polymorphism and gastric cancer risk: a meta-analysis
    • Fu B, Song P, Lu M, Wang B, Zhao Q. 2014. The association between miR-146a gene rs2910164 polymorphism and gastric cancer risk: a meta-analysis. Biomed Pharmacother 68:923–928.
    • (2014) Biomed Pharmacother , vol.68 , pp. 923-928
    • Fu, B.1    Song, P.2    Lu, M.3    Wang, B.4    Zhao, Q.5
  • 22
    • 55349115756 scopus 로고    scopus 로고
    • Worldwide genetic variation in dopamine and serotonin pathway genes: implications for association studies
    • Gardner M, Bertranpetit J, Comas D. 2008. Worldwide genetic variation in dopamine and serotonin pathway genes: implications for association studies. Am J Med Genet B Neuropsychiatr Genet 147B:1070–1075.
    • (2008) Am J Med Genet B Neuropsychiatr Genet , vol.147B , pp. 1070-1075
    • Gardner, M.1    Bertranpetit, J.2    Comas, D.3
  • 26
    • 78651109601 scopus 로고    scopus 로고
    • Overexpression of miR-128 specifically inhibits the truncated isoform of NTRK3 and upregulates BCL2 in SH-SY5Y neuroblastoma cells
    • Guidi M, Muiños-Gimeno M, Kagerbauer B, Martí E, Estivill X, Espinosa-Parrilla Y. 2010. Overexpression of miR-128 specifically inhibits the truncated isoform of NTRK3 and upregulates BCL2 in SH-SY5Y neuroblastoma cells. BMC Mol Biol 11:95.
    • (2010) BMC Mol Biol , vol.11 , pp. 95
    • Guidi, M.1    Muiños-Gimeno, M.2    Kagerbauer, B.3    Martí, E.4    Estivill, X.5    Espinosa-Parrilla, Y.6
  • 27
    • 84924973524 scopus 로고    scopus 로고
    • Susceptibility variants in the CD58 gene locus point to a role of microRNA-548ac in the pathogenesis of multiple sclerosis
    • Hecker M, Fitzner B, Blaschke J, Blaschke P, Zettl UK. 2015. Susceptibility variants in the CD58 gene locus point to a role of microRNA-548ac in the pathogenesis of multiple sclerosis. Mutat Res Rev Mutat Res 763:161–167.
    • (2015) Mutat Res Rev Mutat Res , vol.763 , pp. 161-167
    • Hecker, M.1    Fitzner, B.2    Blaschke, J.3    Blaschke, P.4    Zettl, U.K.5
  • 28
    • 84918770022 scopus 로고    scopus 로고
    • Functional and evolutionary significance of human microRNA seed region mutations
    • Hill CG, Jabbari N, Matyunina L V, McDonald JF. 2014. Functional and evolutionary significance of human microRNA seed region mutations. PLoS One 9:e115241.
    • (2014) PLoS One , vol.9
    • Hill, C.G.1    Jabbari, N.2    Matyunina, L.V.3    McDonald, J.F.4
  • 30
    • 77951460055 scopus 로고    scopus 로고
    • MicroRNA-196 represses Bach1 protein and hepatitis C virus gene expression in human hepatoma cells expressing hepatitis C viral proteins
    • Hou W, Tian Q, Zheng J, Bonkovsky HL. 2010. MicroRNA-196 represses Bach1 protein and hepatitis C virus gene expression in human hepatoma cells expressing hepatitis C viral proteins. Hepatology 51:1494–1504.
    • (2010) Hepatology , vol.51 , pp. 1494-1504
    • Hou, W.1    Tian, Q.2    Zheng, J.3    Bonkovsky, H.L.4
  • 31
    • 84908318087 scopus 로고    scopus 로고
    • Genetic variation in the non-coding genome: involvement of micro-RNAs and long non-coding RNAs in disease
    • Hrdlickova B, de Almeida RC, Borek Z, Withoff S. 2014. Genetic variation in the non-coding genome: involvement of micro-RNAs and long non-coding RNAs in disease. Biochim Biophys Acta 1842:1910–1922.
    • (2014) Biochim Biophys Acta , vol.1842 , pp. 1910-1922
    • Hrdlickova, B.1    de Almeida, R.C.2    Borek, Z.3    Withoff, S.4
  • 32
    • 84890013875 scopus 로고    scopus 로고
    • miR-146a-5p circuitry uncouples cell proliferation and migration, but not differentiation, in human mesenchymal stem cells
    • Hsieh J-Y, Huang T-S, Cheng S-M, Lin W-S, Tsai T-N, Lee OK, Wang H-W. 2013. miR-146a-5p circuitry uncouples cell proliferation and migration, but not differentiation, in human mesenchymal stem cells. Nucleic Acids Res 41:9753–9763.
    • (2013) Nucleic Acids Res , vol.41 , pp. 9753-9763
    • Hsieh, J.-Y.1    Huang, T.-S.2    Cheng, S.-M.3    Lin, W.-S.4    Tsai, T.-N.5    Lee, O.K.6    Wang, H.-W.7
  • 37
    • 84978864116 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms of miR-149 gene rs2292832 contributes to the risk of hepatocellular carcinoma, but not overall cancer: a meta-analysis
    • [Epub ahead of print]
    • Jia H, Yu H, Liu Q. 2016. Single nucleotide polymorphisms of miR-149 gene rs2292832 contributes to the risk of hepatocellular carcinoma, but not overall cancer: a meta-analysis. Minerva Med [Epub ahead of print]
    • (2016) Minerva Med
    • Jia, H.1    Yu, H.2    Liu, Q.3
  • 38
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E. 2007. The role of site accessibility in microRNA target recognition. Nat Genet 39:1278–1284.
    • (2007) Nat Genet , vol.39 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 39
    • 33748928159 scopus 로고    scopus 로고
    • The diverse functions of microRNAs in animal development and disease
    • Kloosterman WP, Plasterk RH. 2006. The diverse functions of microRNAs in animal development and disease. Dev Cell 11:441–450.
    • (2006) Dev Cell , vol.11 , pp. 441-450
    • Kloosterman, W.P.1    Plasterk, R.H.2
  • 40
    • 77955902024 scopus 로고    scopus 로고
    • The widespread regulation of microRNA biogenesis, function and decay
    • Krol J, Loedige I, Filipowicz W. 2010. The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 11:597–610.
    • (2010) Nat Rev Genet , vol.11 , pp. 597-610
    • Krol, J.1    Loedige, I.2    Filipowicz, W.3
  • 42
    • 0015879546 scopus 로고
    • Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
    • Lewontin RC, Krakauer J. 1973. Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74:175–195.
    • (1973) Genetics , vol.74 , pp. 175-195
    • Lewontin, R.C.1    Krakauer, J.2
  • 43
    • 79951993896 scopus 로고    scopus 로고
    • Tabix: fast retrieval of sequence features from generic TAB-delimited files
    • Li H. 2011. Tabix: fast retrieval of sequence features from generic TAB-delimited files. Bioinformatics 27:718–719.
    • (2011) Bioinformatics , vol.27 , pp. 718-719
    • Li, H.1
  • 44
    • 84863571375 scopus 로고    scopus 로고
    • An ancestral miR-1304 allele present in neanderthals regulates genes involved in enamel formation and could explain dental differences with modern humans
    • Lopez-Valenzuela M, Ramírez O, Rosas A, García-Vargas S, de la Rasilla M, Lalueza-Fox C, Espinosa-Parrilla Y. 2012. An ancestral miR-1304 allele present in neanderthals regulates genes involved in enamel formation and could explain dental differences with modern humans. Mol Biol Evol 29:1797–1806.
    • (2012) Mol Biol Evol , vol.29 , pp. 1797-1806
    • Lopez-Valenzuela, M.1    Ramírez, O.2    Rosas, A.3    García-Vargas, S.4    de la Rasilla, M.5    Lalueza-Fox, C.6    Espinosa-Parrilla, Y.7
  • 48
    • 84912117511 scopus 로고    scopus 로고
    • Prevention strategies for gastric cancer: a global perspective
    • Park JY, von Karsa L, Herrero R. 2014. Prevention strategies for gastric cancer: a global perspective. Clin Endosc 47:478–489.
    • (2014) Clin Endosc , vol.47 , pp. 478-489
    • Park, J.Y.1    von Karsa, L.2    Herrero, R.3
  • 50
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29:e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 52
    • 84889260117 scopus 로고    scopus 로고
    • A functional variant of pre-miRNA-196a2 confers risk for Behcet's disease but not for Vogt-Koyanagi-Harada syndrome or AAU in ankylosing spondylitis
    • Qi J, Hou S, Zhang Q, Liao D, Wei L, Fang J, Zhou Y, Kijlstra A, Yang P. 2013. A functional variant of pre-miRNA-196a2 confers risk for Behcet's disease but not for Vogt-Koyanagi-Harada syndrome or AAU in ankylosing spondylitis. Hum Genet 132:1395–1404.
    • (2013) Hum Genet , vol.132 , pp. 1395-1404
    • Qi, J.1    Hou, S.2    Zhang, Q.3    Liao, D.4    Wei, L.5    Fang, J.6    Zhou, Y.7    Kijlstra, A.8    Yang, P.9
  • 54
    • 84908009066 scopus 로고    scopus 로고
    • Global population-specific variation in miRNA associated with cancer risk and clinical biomarkers
    • Rawlings-Goss RA, Campbell MC, Tishkoff SA. 2014. Global population-specific variation in miRNA associated with cancer risk and clinical biomarkers. BMC Med Genomics 7:53.
    • (2014) BMC Med Genomics , vol.7 , pp. 53
    • Rawlings-Goss, R.A.1    Campbell, M.C.2    Tishkoff, S.A.3
  • 56
    • 33847665108 scopus 로고    scopus 로고
    • Human polymorphism at microRNAs and microRNA target sites
    • Saunders MA, Liang H, Li W-H. 2007. Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci USA 104:3300–3305.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 3300-3305
    • Saunders, M.A.1    Liang, H.2    Li, W.-H.3
  • 57
    • 0032471542 scopus 로고    scopus 로고
    • The tumor-suppressor function of E-cadherin
    • Semb H, Christofori G. 1998. The tumor-suppressor function of E-cadherin. Am J Hum Genet 63:1588–1593.
    • (1998) Am J Hum Genet , vol.63 , pp. 1588-1593
    • Semb, H.1    Christofori, G.2
  • 58
    • 34547555796 scopus 로고    scopus 로고
    • Global and local architecture of the mammalian microRNA–transcription factor regulatory network
    • Shalgi R, Lieber D, Oren M, Pilpel Y. 2007. Global and local architecture of the mammalian microRNA–transcription factor regulatory network. PLoS Comput Biol 3:e131.
    • (2007) PLoS Comput Biol , vol.3
    • Shalgi, R.1    Lieber, D.2    Oren, M.3    Pilpel, Y.4
  • 59
    • 84904890529 scopus 로고    scopus 로고
    • Hyaluronan regulation of endothelial barrier function in cancer
    • Singleton PA. 2014. Hyaluronan regulation of endothelial barrier function in cancer. Adv Cancer Res 123:191–209.
    • (2014) Adv Cancer Res , vol.123 , pp. 191-209
    • Singleton, P.A.1
  • 60
  • 61
    • 33747608638 scopus 로고    scopus 로고
    • NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses
    • Taganov KD, Boldin MP, Chang K-J, Baltimore D. 2006. NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proc Natl Acad Sci USA 103:12481–12486.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 12481-12486
    • Taganov, K.D.1    Boldin, M.P.2    Chang, K.-J.3    Baltimore, D.4
  • 62
    • 84903717510 scopus 로고    scopus 로고
    • Development of microRNA therapeutics is coming of age
    • van
    • van Rooij E, Kauppinen S. 2014. Development of microRNA therapeutics is coming of age. EMBO Mol Med 6:851–864.
    • (2014) EMBO Mol Med , vol.6 , pp. 851-864
    • Rooij, E.1    Kauppinen, S.2
  • 63
    • 84905834980 scopus 로고    scopus 로고
    • Effects of common polymorphisms rs2910164 in miR-146a and rs11614913 in miR-196a2 on susceptibility to colorectal cancer: a systematic review meta-analysis
    • Wan D, Gu W, Xu G, Shen C, Ding D, Shen S, Wang S, Gong X, He S, Zhi Q. 2014. Effects of common polymorphisms rs2910164 in miR-146a and rs11614913 in miR-196a2 on susceptibility to colorectal cancer: a systematic review meta-analysis. Clin Transl Oncol 16:792–800.
    • (2014) Clin Transl Oncol , vol.16 , pp. 792-800
    • Wan, D.1    Gu, W.2    Xu, G.3    Shen, C.4    Ding, D.5    Shen, S.6    Wang, S.7    Gong, X.8    He, S.9    Zhi, Q.10
  • 64
    • 0036957370 scopus 로고    scopus 로고
    • Estimating F-statistics
    • Weir BS, Hill WG. 2002. Estimating F-statistics. Annu Rev Genet 36:721–750.
    • (2002) Annu Rev Genet , vol.36 , pp. 721-750
    • Weir, B.S.1    Hill, W.G.2
  • 65
    • 50849100374 scopus 로고    scopus 로고
    • Genetic variations of microRNAs in human cancer and their effects on the expression of miRNAs
    • Wu M, Jolicoeur N, Li Z, Zhang L, Fortin Y, L'Abbe D, Yu Z, Shen SH. 2008. Genetic variations of microRNAs in human cancer and their effects on the expression of miRNAs. Carcinogenesis 29:1710–1716.
    • (2008) Carcinogenesis , vol.29 , pp. 1710-1716
    • Wu, M.1    Jolicoeur, N.2    Li, Z.3    Zhang, L.4    Fortin, Y.5    L'Abbe, D.6    Yu, Z.7    Shen, S.H.8
  • 66
    • 84947730835 scopus 로고    scopus 로고
    • Hsa-mir-1269 genetic variant contributes to hepatocellular carcinoma susceptibility through affecting SOX6
    • Xiong G, Wang Y, Ding Q, Yang L. 2015. Hsa-mir-1269 genetic variant contributes to hepatocellular carcinoma susceptibility through affecting SOX6. Am J Transl Res 7:2091–2098.
    • (2015) Am J Transl Res , vol.7 , pp. 2091-2098
    • Xiong, G.1    Wang, Y.2    Ding, Q.3    Yang, L.4
  • 68
    • 79957556255 scopus 로고    scopus 로고
    • Effects of common polymorphisms rs11614913 in mir-196a2 and rs2910164 in mir-146a on cancer susceptibility: a meta-analysis
    • Xu W, Xu J, Liu S, Chen B, Wang X, Li Y, Qian Y, Zhao W, Wu J. 2011. Effects of common polymorphisms rs11614913 in mir-196a2 and rs2910164 in mir-146a on cancer susceptibility: a meta-analysis. PLoS One 6:1–7.
    • (2011) PLoS One , vol.6 , pp. 1-7
    • Xu, W.1    Xu, J.2    Liu, S.3    Chen, B.4    Wang, X.5    Li, Y.6    Qian, Y.7    Zhao, W.8    Wu, J.9
  • 69
    • 84964313931 scopus 로고    scopus 로고
    • MiR-146a rs2910164 G/C polymorphism and gastric cancer susceptibility: a meta-analysis
    • Xu Z, Zhang L, Cao H, Bai B. 2014. MiR-146a rs2910164 G/C polymorphism and gastric cancer susceptibility: a meta-analysis. BMC Med Genet 15:1–8.
    • (2014) BMC Med Genet , vol.15 , pp. 1-8
    • Xu, Z.1    Zhang, L.2    Cao, H.3    Bai, B.4
  • 70
    • 0037273432 scopus 로고    scopus 로고
    • Sequence requirements for micro RNA processing and function in human cells
    • Zeng Y, Cullen BR. 2003. Sequence requirements for micro RNA processing and function in human cells. RNA 9:112–123.
    • (2003) RNA , vol.9 , pp. 112-123
    • Zeng, Y.1    Cullen, B.R.2
  • 71
    • 84922392152 scopus 로고    scopus 로고
    • Association between miR-146aG>C and miR-196a2C>T polymorphisms and the risk of hepatocellular carcinoma in a Chinese population
    • Zhou B, Dong L, Jing X, Li J, Yang S, Wang J, Zhao L. 2014. Association between miR-146aG>C and miR-196a2C>T polymorphisms and the risk of hepatocellular carcinoma in a Chinese population. Tumor Biol 35:7775–7780.
    • (2014) Tumor Biol , vol.35 , pp. 7775-7780
    • Zhou, B.1    Dong, L.2    Jing, X.3    Li, J.4    Yang, S.5    Wang, J.6    Zhao, L.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.