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Volumn 4, Issue 12, 2012, Pages

A map of human microRNA variation uncovers unexpectedly high levels of variability

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EID: 84865057476     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/gm363     Document Type: Article
Times cited : (29)

References (53)
  • 1
    • 18344369543 scopus 로고    scopus 로고
    • MicroRNA biogenesis: coordinated cropping and dicing
    • Kim VN: MicroRNA biogenesis: coordinated cropping and dicing. Nat Rev Mol Cell Biol 2005, 6:376-385.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 376-385
    • Kim, V.N.1
  • 5
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel DP: MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297. 10.1016/S0092-8674(04)00045-5.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 6
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V: The functions of animal microRNAs. Nature 2004, 431:350-355. 10.1038/nature02871.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 7
    • 33748928159 scopus 로고    scopus 로고
    • The diverse functions of microRNAs in animal development and disease
    • Kloosterman WP, Plasterk RH: The diverse functions of microRNAs in animal development and disease. Dev Cell 2006, 11:441-450. 10.1016/j.devcel.2006.09.009.
    • (2006) Dev Cell , vol.11 , pp. 441-450
    • Kloosterman, W.P.1    Plasterk, R.H.2
  • 8
    • 54849408182 scopus 로고    scopus 로고
    • An analysis of human microRNA and disease associations
    • Lu M, Zhang Q, Deng M, Miao J, Guo Y, Gao W, Cui Q: An analysis of human microRNA and disease associations. PLoS ONE 2008, 3:e3420. 10.1371/journal.pone.0003420.
    • (2008) PLoS ONE , vol.3 , pp. e3420
    • Lu, M.1    Zhang, Q.2    Deng, M.3    Miao, J.4    Guo, Y.5    Gao, W.6    Cui, Q.7
  • 10
    • 33847665108 scopus 로고    scopus 로고
    • Human polymorphism at microRNAs and microRNA target sites
    • Saunders MA, Liang H, Li WH: Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci USA 2007, 104:3300-3305. 10.1073/pnas.0611347104.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 3300-3305
    • Saunders, M.A.1    Liang, H.2    Li, W.H.3
  • 11
    • 58349104128 scopus 로고    scopus 로고
    • Common genetic variants in pre-microRNAs were associated with increased risk of breast cancer in Chinese women
    • Hu Z, Liang J, Wang Z, Tian T, Zhou X, Chen J, Miao R, Wang Y, Wang X, Shen H: Common genetic variants in pre-microRNAs were associated with increased risk of breast cancer in Chinese women. Hum Mutat 2009, 30:79-84. 10.1002/humu.20837.
    • (2009) Hum Mutat , vol.30 , pp. 79-84
    • Hu, Z.1    Liang, J.2    Wang, Z.3    Tian, T.4    Zhou, X.5    Chen, J.6    Miao, R.7    Wang, Y.8    Wang, X.9    Shen, H.10
  • 12
    • 77957589721 scopus 로고    scopus 로고
    • Common genetic variants in pre-microRNAs and risk of gallbladder cancer in North Indian population
    • Srivastava K, Srivastava A, Mittal B: Common genetic variants in pre-microRNAs and risk of gallbladder cancer in North Indian population. J Hum Genet 2010, 55:495-499. 10.1038/jhg.2010.54.
    • (2010) J Hum Genet , vol.55 , pp. 495-499
    • Srivastava, K.1    Srivastava, A.2    Mittal, B.3
  • 14
    • 33751520430 scopus 로고    scopus 로고
    • Natural selection on human microRNA binding sites inferred from SNP data
    • Chen K, Rajewsky N: Natural selection on human microRNA binding sites inferred from SNP data. Nat Genet 2006, 38:1452-1456. 10.1038/ng1910.
    • (2006) Nat Genet , vol.38 , pp. 1452-1456
    • Chen, K.1    Rajewsky, N.2
  • 15
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • The 1000 Genomes Project Consortium: A map of human genome variation from population-scale sequencing. Nature 2010, 467:1061-1073. 10.1038/nature09534.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 16
    • 78650895972 scopus 로고    scopus 로고
    • Loss-of-function variants in the genomes of healthy humans
    • MacArthur DG, Tyler-Smith C: Loss-of-function variants in the genomes of healthy humans. Hum Mol Genet 2010, 19:R125-130. 10.1093/hmg/ddq365.
    • (2010) Hum Mol Genet , vol.19 , pp. R125-130
    • MacArthur, D.G.1    Tyler-Smith, C.2
  • 17
    • 84930624814 scopus 로고    scopus 로고
    • The Medical Genome Project. [ http://www.medicalgenomeproject.es ]
  • 19
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120:15-20. 10.1016/j.cell.2004.12.035.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 22
    • 77951953262 scopus 로고    scopus 로고
    • Got target? Computational methods for microRNA target prediction and their extension
    • Min H, Yoon S: Got target? Computational methods for microRNA target prediction and their extension. Exp Mol Med 2010, 42:233-244. 10.3858/emm.2010.42.4.032.
    • (2010) Exp Mol Med , vol.42 , pp. 233-244
    • Min, H.1    Yoon, S.2
  • 23
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel DP: MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233. 10.1016/j.cell.2009.01.002.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 24
    • 84855955378 scopus 로고    scopus 로고
    • PhenomiR: microRNAs in human diseases and biological processes
    • Ruepp A, Kowarsch A, Theis F: PhenomiR: microRNAs in human diseases and biological processes. Methods Mol Biol 2012, 822:249-260. 10.1007/978-1-61779-427-8_17.
    • (2012) Methods Mol Biol , vol.822 , pp. 249-260
    • Ruepp, A.1    Kowarsch, A.2    Theis, F.3
  • 25
    • 84930667169 scopus 로고    scopus 로고
    • The European Genome-phenome Archive EGA. [ http://www.ebi.ac.uk/ega/ ]
  • 26
    • 84930638905 scopus 로고    scopus 로고
    • The 1000 Genomes Project. [ http://www.1000genomes.org/ ]
  • 27
    • 84930648329 scopus 로고    scopus 로고
    • Baylor College of Medicine: Library Preparation and Exome Capture Protocol Version 2.1.
    • Baylor College of Medicine: Library Preparation and Exome Capture Protocol Version 2.1. [ http://www.hgsc.bcm.tmc.edu/documents/Preparation_of_SOLiD_Capture_Libraries.pdf ]
  • 28
    • 70450177746 scopus 로고    scopus 로고
    • BFAST: an alignment tool for large scale genome resequencing
    • Homer N, Merriman B, Nelson SF: BFAST: an alignment tool for large scale genome resequencing. PLoS ONE 2009, 4:e7767. 10.1371/journal.pone.0007767.
    • (2009) PLoS ONE , vol.4 , pp. e7767
    • Homer, N.1    Merriman, B.2    Nelson, S.F.3
  • 32
    • 84930666875 scopus 로고    scopus 로고
    • miRBase. [ http://mirbase.org/ ]
  • 33
    • 84930668020 scopus 로고    scopus 로고
    • The R Project for Statistical Computing. [ http://www.R-project.org ]
  • 34
    • 17644379063 scopus 로고    scopus 로고
    • A note on exact tests of Hardy-Weinberg equilibrium
    • Wigginton JE, Cutler DJ, Abecasis GR: A note on exact tests of Hardy-Weinberg equilibrium. Am J Hum Genet 2005, 76:887-893. 10.1086/429864.
    • (2005) Am J Hum Genet , vol.76 , pp. 887-893
    • Wigginton, J.E.1    Cutler, D.J.2    Abecasis, G.R.3
  • 35
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D: Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 2006, 38:904-909. 10.1038/ng1847.
    • (2006) Nat Genet , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 36
    • 85006181782 scopus 로고    scopus 로고
    • HiveR: 2D and 3D Hive Plots for R.
    • HiveR: 2D and 3D Hive Plots for R. [ http://academic.depauw.edu/~hanson/HiveR/HiveR.html ]
  • 37
    • 84930617215 scopus 로고    scopus 로고
    • Primer 3. [ http://frodo.wi.mit.edu/primer3/ ]
  • 39
    • 57049168104 scopus 로고    scopus 로고
    • Divergence between human populations estimated from linkage disequilibrium
    • Sved JA, McRae AF, Visscher PM: Divergence between human populations estimated from linkage disequilibrium. Am J Hum Genet 2008, 83:737-743. 10.1016/j.ajhg.2008.10.019.
    • (2008) Am J Hum Genet , vol.83 , pp. 737-743
    • Sved, J.A.1    McRae, A.F.2    Visscher, P.M.3
  • 40
    • 79957956814 scopus 로고    scopus 로고
    • Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs
    • McEvoy BP, Powell JE, Goddard ME, Visscher PM: Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs. Genome Res 2011, 21:821-829. 10.1101/gr.119636.110.
    • (2011) Genome Res , vol.21 , pp. 821-829
    • McEvoy, B.P.1    Powell, J.E.2    Goddard, M.E.3    Visscher, P.M.4
  • 41
    • 70350069921 scopus 로고    scopus 로고
    • Spatial patterns of variation due to natural selection in humans
    • Novembre J, Di Rienzo A: Spatial patterns of variation due to natural selection in humans. Nat Rev Genet 2009, 10:745-755. 10.1038/nrg2632.
    • (2009) Nat Rev Genet , vol.10 , pp. 745-755
    • Novembre, J.1    Di Rienzo, A.2
  • 42
    • 0242524432 scopus 로고    scopus 로고
    • Patterns of human genetic diversity: implications for human evolutionary history and disease
    • Tishkoff SA, Verrelli BC: Patterns of human genetic diversity: implications for human evolutionary history and disease. Annu Rev Genomics Hum Genet 2003, 4:293-340. 10.1146/annurev.genom.4.070802.110226.
    • (2003) Annu Rev Genomics Hum Genet , vol.4 , pp. 293-340
    • Tishkoff, S.A.1    Verrelli, B.C.2
  • 43
    • 24144494563 scopus 로고    scopus 로고
    • The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans
    • Abbott AL, Alvarez-Saavedra E, Miska EA, Lau NC, Bartel DP, Horvitz HR, Ambros V: The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans. Dev Cell 2005, 9:403-414. 10.1016/j.devcel.2005.07.009.
    • (2005) Dev Cell , vol.9 , pp. 403-414
    • Abbott, A.L.1    Alvarez-Saavedra, E.2    Miska, E.A.3    Lau, N.C.4    Bartel, D.P.5    Horvitz, H.R.6    Ambros, V.7
  • 44
    • 47249091921 scopus 로고    scopus 로고
    • The miR-200 family inhibits epithelial-mesenchymal transition and cancer cell migration by direct targeting of E-cadherin transcriptional repressors ZEB1 and ZEB2
    • Korpal M, Lee ES, Hu G, Kang Y: The miR-200 family inhibits epithelial-mesenchymal transition and cancer cell migration by direct targeting of E-cadherin transcriptional repressors ZEB1 and ZEB2. J Biol Chem 2008, 283:14910-14914. 10.1074/jbc.C800074200
    • (2008) J Biol Chem , vol.283 , pp. 14910-14914
    • Korpal, M.1    Lee, E.S.2    Hu, G.3    Kang, Y.4
  • 46
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M: KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 2012, 40:D109-114. 10.1093/nar/gkr988.
    • (2012) Nucleic Acids Res , vol.40 , pp. D109-114
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 47
    • 70349320158 scopus 로고    scopus 로고
    • Causes and consequences of microRNA dysregulation in cancer
    • Croce CM: Causes and consequences of microRNA dysregulation in cancer. Nat Rev Genet 2009, 10:704-714. 10.1038/nrg2634.
    • (2009) Nat Rev Genet , vol.10 , pp. 704-714
    • Croce, C.M.1
  • 48
    • 63349094897 scopus 로고    scopus 로고
    • Alterations of the microRNA network cause neurodegenerative disease
    • Hebert SS, De Strooper B: Alterations of the microRNA network cause neurodegenerative disease. Trends Neurosci 2009, 32:199-206. 10.1016/j.tins.2008.12.003.
    • (2009) Trends Neurosci , vol.32 , pp. 199-206
    • Hebert, S.S.1    De Strooper, B.2
  • 49
    • 67349273027 scopus 로고    scopus 로고
    • MicroRNA in autoimmunity and autoimmune diseases
    • Pauley KM, Cha S, Chan EK: MicroRNA in autoimmunity and autoimmune diseases. J Autoimmun 2009, 32:189-194. 10.1016/j.jaut.2009.02.012.
    • (2009) J Autoimmun , vol.32 , pp. 189-194
    • Pauley, K.M.1    Cha, S.2    Chan, E.K.3
  • 50
    • 77955013582 scopus 로고    scopus 로고
    • Non-coding RNAs: a key to future personalized molecular therapy?
    • Galasso M, Elena Sana M, Volinia S: Non-coding RNAs: a key to future personalized molecular therapy?. Genome Med 2010, 2:12. 10.1186/gm133.
    • (2010) Genome Med , vol.2 , pp. 12
    • Galasso, M.1    Elena Sana, M.2    Volinia, S.3
  • 53
    • 84855925920 scopus 로고    scopus 로고
    • Rare and common variants: twenty arguments
    • Gibson G: Rare and common variants: twenty arguments. Nat Rev Genet 2011, 13:135-145.
    • (2011) Nat Rev Genet , vol.13 , pp. 135-145
    • Gibson, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.