-
1
-
-
84883254031
-
-
A quality control tool for high throughput sequence data Accessed June–December 2014
-
Andrews S (2014) FastQC. A quality control tool for high throughput sequence data http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ Accessed June–December 2014
-
(2014)
FastQC
-
-
Andrews, S.1
-
2
-
-
0035088098
-
Global analysis of Escherichia coli gene expression during the acetate-induced acid tolerance response
-
COI: 1:CAS:528:DC%2BD3MXitFWkurw%3D, PID: 11244055
-
Arnold CN, Mcelhanon J, Lee A, Leonhart R, Siegele DA (2001) Global analysis of Escherichia coli gene expression during the acetate-induced acid tolerance response. J Bacteriol 183:2178–2186
-
(2001)
J Bacteriol
, vol.183
, pp. 2178-2186
-
-
Arnold, C.N.1
Mcelhanon, J.2
Lee, A.3
Leonhart, R.4
Siegele, D.A.5
-
3
-
-
84861408392
-
Plant and microbial research seeks biofuel production from lignocellulose
-
Bartley LE, Ronald PC (2009) Plant and microbial research seeks biofuel production from lignocellulose. Calif Agric 63:178–184
-
(2009)
Calif Agric
, vol.63
, pp. 178-184
-
-
Bartley, L.E.1
Ronald, P.C.2
-
4
-
-
0042890424
-
Cyclic AMP receptor protein-dependent activation of the Escherichia coli acsP2 promoter by a synergistic class III mechanism
-
COI: 1:CAS:528:DC%2BD3sXmvVersLw%3D, PID: 12923087
-
Beatty CM, Browning DF, Busby SJW, Wolfe AJ (2003) Cyclic AMP receptor protein-dependent activation of the Escherichia coli acsP2 promoter by a synergistic class III mechanism. J Bacteriol 185:5148–5157
-
(2003)
J Bacteriol
, vol.185
, pp. 5148-5157
-
-
Beatty, C.M.1
Browning, D.F.2
Busby, S.J.W.3
Wolfe, A.J.4
-
5
-
-
84855710234
-
Experimental evolution of a facultative thermophile from a mesophilic ancestor
-
COI: 1:CAS:528:DC%2BC38XjsVKku78%3D, PID: 22020511
-
Blaby IK, Lyons BJ, Wroclawska-Hughes E, Phillips GCF, Pyle TP, Chamberlin SG, Benner SA, Lyons TJ, de Crécy-Lagard V, de Crécy E (2012) Experimental evolution of a facultative thermophile from a mesophilic ancestor. Appl Environ Microbiol 78:144–155
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 144-155
-
-
Blaby, I.K.1
Lyons, B.J.2
Wroclawska-Hughes, E.3
Phillips, G.C.F.4
Pyle, T.P.5
Chamberlin, S.G.6
Benner, S.A.7
Lyons, T.J.8
de Crécy-Lagard, V.9
de Crécy, E.10
-
6
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
COI: 1:CAS:528:DC%2BC2cXht1Sqt7nP, PID: 24695404
-
Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
7
-
-
31844445053
-
Comparison of different procedures for the detoxification of eucalyptus hemicellulosic hydrolysate for use in fermentative processes
-
COI: 1:CAS:528:DC%2BD28Xht12qurc%3D
-
Carvalho GBM, Mussatto SI, Candido EJ, Silva J (2006) Comparison of different procedures for the detoxification of eucalyptus hemicellulosic hydrolysate for use in fermentative processes. J Chem Technol Biotechnol 81:152–157
-
(2006)
J Chem Technol Biotechnol
, vol.81
, pp. 152-157
-
-
Carvalho, G.B.M.1
Mussatto, S.I.2
Candido, E.J.3
Silva, J.4
-
8
-
-
35648993038
-
Development of a novel continuous culture device for experimental evolution of bacterial populations
-
PID: 17896105
-
de Crécy E, Metzgar D, Allen C, Penicaud M, Lyons B, Hansen CJ, de Crécy-Lagard V (2007) Development of a novel continuous culture device for experimental evolution of bacterial populations. Appl Microbiol Biotechnol 77:489–496
-
(2007)
Appl Microbiol Biotechnol
, vol.77
, pp. 489-496
-
-
de Crécy, E.1
Metzgar, D.2
Allen, C.3
Penicaud, M.4
Lyons, B.5
Hansen, C.J.6
de Crécy-Lagard, V.7
-
9
-
-
0020574802
-
Selection in chemostats
-
COI: 1:STN:280:DyaL3s3ntV2ksw%3D%3D, PID: 6308409
-
Dykhuizen DE, Hartl DL (1983) Selection in chemostats. Microbiol Rev 47:150–168
-
(1983)
Microbiol Rev
, vol.47
, pp. 150-168
-
-
Dykhuizen, D.E.1
Hartl, D.L.2
-
10
-
-
0031562034
-
Optimization of the ion-exchange analysis of organic acids from fermentation
-
COI: 1:CAS:528:DyaK2sXhs1Orug%3D%3D
-
Eiteman MA, Chastain MJ (1997) Optimization of the ion-exchange analysis of organic acids from fermentation. Anal Chim Acta 338:69–75
-
(1997)
Anal Chim Acta
, vol.338
, pp. 69-75
-
-
Eiteman, M.A.1
Chastain, M.J.2
-
11
-
-
9444285788
-
Escherichia coli acid tolerance: tales of an amateur acidophile
-
COI: 1:CAS:528:DC%2BD2cXos1KqurY%3D, PID: 15494746
-
Foster JW (2004) Escherichia coli acid tolerance: tales of an amateur acidophile. Nat Rev Microbiol 2:898–907
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 898-907
-
-
Foster, J.W.1
-
12
-
-
56149116568
-
Global regulators of transcription in Escherichia coli: mechanisms of action and methods for study
-
COI: 1:CAS:528:DC%2BD1MXhslWisL0%3D, PID: 19026863
-
Grainger DC, Busby SJW (2008) Global regulators of transcription in Escherichia coli: mechanisms of action and methods for study. Adv Appl Microbiol 65:93–113
-
(2008)
Adv Appl Microbiol
, vol.65
, pp. 93-113
-
-
Grainger, D.C.1
Busby, S.J.W.2
-
13
-
-
79959187224
-
Escherichia coli YafP protein modulates DNA damaging property of the nitroaromatic compounds
-
COI: 1:CAS:528:DC%2BC3MXmvVamtLc%3D, PID: 21300638
-
Gutierrez A, Elez M, Clermont O, Denamur E, Matic I (2011) Escherichia coli YafP protein modulates DNA damaging property of the nitroaromatic compounds. Nucleic Acids Res 39:4192–4201
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 4192-4201
-
-
Gutierrez, A.1
Elez, M.2
Clermont, O.3
Denamur, E.4
Matic, I.5
-
14
-
-
0015609161
-
Growth and initiation of protein-synthesis in Escherichia coli in presence of trimethoprim
-
COI: 1:CAS:528:DyaE3sXktFCmt74%3D, PID: 4572717
-
Harvey RJ (1973) Growth and initiation of protein-synthesis in Escherichia coli in presence of trimethoprim. J Bacteriol 114:309–322
-
(1973)
J Bacteriol
, vol.114
, pp. 309-322
-
-
Harvey, R.J.1
-
15
-
-
40049093580
-
Growth rate and medium composition strongly affect folate content in Saccharomyces cerevisiae
-
COI: 1:CAS:528:DC%2BD1cXjtVChsL4%3D, PID: 18234383
-
Hjortmo S, Patring J, Andlid T (2008) Growth rate and medium composition strongly affect folate content in Saccharomyces cerevisiae. Int J Food Microbiol 123:93–100
-
(2008)
Int J Food Microbiol
, vol.123
, pp. 93-100
-
-
Hjortmo, S.1
Patring, J.2
Andlid, T.3
-
16
-
-
12544249147
-
Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass
-
COI: 1:CAS:528:DC%2BD2cXpsFKrtr0%3D, PID: 15300416
-
Klinke HB, Thomsen AB, Ahring BK (2004) Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass. Appl Microbiol Biotechnol 66:10–26
-
(2004)
Appl Microbiol Biotechnol
, vol.66
, pp. 10-26
-
-
Klinke, H.B.1
Thomsen, A.B.2
Ahring, B.K.3
-
17
-
-
72649105006
-
Steady state growth space study of Lactococcus lactis in A-stat cultures
-
Lahtvee PJ, Valgepea K, Nahku R, Abner K, Adamberg K, Vilu R (2009) Steady state growth space study of Lactococcus lactis in A-stat cultures. Ant Van Leeuw 96:487–496
-
(2009)
Ant Van Leeuw
, vol.96
, pp. 487-496
-
-
Lahtvee, P.J.1
Valgepea, K.2
Nahku, R.3
Abner, K.4
Adamberg, K.5
Vilu, R.6
-
18
-
-
80052440167
-
Microbial removal of acetate selectively from sugar mixtures
-
COI: 1:CAS:528:DC%2BC3MXhtVKmu7bL, PID: 21225311
-
Lakshmanaswamy A, Rajaraman E, Eiteman MA, Altman E (2011) Microbial removal of acetate selectively from sugar mixtures. J Ind Microbiol Biotechnol 38:1477–1484
-
(2011)
J Ind Microbiol Biotechnol
, vol.38
, pp. 1477-1484
-
-
Lakshmanaswamy, A.1
Rajaraman, E.2
Eiteman, M.A.3
Altman, E.4
-
19
-
-
12844264234
-
Surface modification of silicon and gold-patterned silicon surfaces for improved biocompatibility and cell patterning selectivity
-
COI: 1:CAS:528:DC%2BD2MXoslWhtg%3D%3D
-
Lan S, Veiseh M, Zhang M (2005) Surface modification of silicon and gold-patterned silicon surfaces for improved biocompatibility and cell patterning selectivity. Biosens Bioelect 20:1697–1708
-
(2005)
Biosens Bioelect
, vol.20
, pp. 1697-1708
-
-
Lan, S.1
Veiseh, M.2
Zhang, M.3
-
20
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
COI: 1:CAS:528:DC%2BC38Xjt1Oqt7c%3D, PID: 22388286
-
Langmead B, Salzberg S (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357–359
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.2
-
21
-
-
68549104404
-
The Sequence alignment/map (SAM) format and SAMtools
-
PID: 19505943
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics 25:2078–2079
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
1000 Genome Project Data Processing Subgroup10
-
22
-
-
78149460454
-
Genetic engineering of Escherichia coli for biofuel production
-
COI: 1:CAS:528:DC%2BC3cXhs1SmurjL, PID: 20822440
-
Liu TG, Khosla C (2010) Genetic engineering of Escherichia coli for biofuel production. Annu Rev Genet 44:53–69
-
(2010)
Annu Rev Genet
, vol.44
, pp. 53-69
-
-
Liu, T.G.1
Khosla, C.2
-
23
-
-
0025264582
-
Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations
-
COI: 1:CAS:528:DyaK3cXitleqtb8%3D, PID: 2187400
-
Luli GW, Strohl WR (1990) Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations. Appl Environ Microbiol 56:1004–1011
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1004-1011
-
-
Luli, G.W.1
Strohl, W.R.2
-
24
-
-
0342864962
-
The influence of acetate on the fermentation of Baker’s yeast
-
COI: 1:CAS:528:DyaG3sXjsF2jsA%3D%3D, PID: 12977788
-
Maesen TJM, Lako E (1952) The influence of acetate on the fermentation of Baker’s yeast. Biochim Biophys Acta 9:106–107
-
(1952)
Biochim Biophys Acta
, vol.9
, pp. 106-107
-
-
Maesen, T.J.M.1
Lako, E.2
-
25
-
-
0029756802
-
Transcription factor recognition surface on the RNA polymerase α subunit is involved in contact with the DNA enhancer element
-
COI: 1:CAS:528:DyaK28Xmt1Krs7k%3D, PID: 8861963
-
Murakami K, Fujita N, Ishihama A (1996) Transcription factor recognition surface on the RNA polymerase α subunit is involved in contact with the DNA enhancer element. EMBO J 15:4358–4367
-
(1996)
EMBO J
, vol.15
, pp. 4358-4367
-
-
Murakami, K.1
Fujita, N.2
Ishihama, A.3
-
26
-
-
1842335066
-
DNA flexibility of the UP element is a major determinant for transcriptional activation at the Escherichia coli acetate promoter
-
PID: 9016619
-
Nègre D, Bonod-Bidaud C, Oudot C, Prost J-F, Kolbl A, Ishihama A, Cozzone AJ, Cortay J-C (1997) DNA flexibility of the UP element is a major determinant for transcriptional activation at the Escherichia coli acetate promoter. Nucleic Acids Res 25:713–718
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 713-718
-
-
Nègre, D.1
Bonod-Bidaud, C.2
Oudot, C.3
Prost, J.-F.4
Kolbl, A.5
Ishihama, A.6
Cozzone, A.J.7
Cortay, J.-C.8
-
27
-
-
0035815011
-
Characterization of ultrathin poly(ethylene glycol) monolayers on silicon substrates
-
COI: 1:CAS:528:DC%2BD3MXhtVynt74%3D
-
Papra A, Gadegaard N, Larsen NB (2001) Characterization of ultrathin poly(ethylene glycol) monolayers on silicon substrates. Langmuir 17:1457–1460
-
(2001)
Langmuir
, vol.17
, pp. 1457-1460
-
-
Papra, A.1
Gadegaard, N.2
Larsen, N.B.3
-
28
-
-
79951843066
-
Biotechnological strategies to overcome inhibitors in lignocellulose hydrolysates for ethanol production: review
-
COI: 1:CAS:528:DC%2BC3MXitVOisLg%3D, PID: 20513164
-
Parawira W, Tekere M (2011) Biotechnological strategies to overcome inhibitors in lignocellulose hydrolysates for ethanol production: review. Crit Rev Biotechnol 31:20–31
-
(2011)
Crit Rev Biotechnol
, vol.31
, pp. 20-31
-
-
Parawira, W.1
Tekere, M.2
-
29
-
-
0027955327
-
Determination of the growth rate-regulated steps in expression of the Escherichia coli K-12 gnd gene
-
Pearse AJ, Wolf RE Jr (1994) Determination of the growth rate-regulated steps in expression of the Escherichia coli K-12 gnd gene. J Bacteriol 176:115–122
-
(1994)
J Bacteriol
, vol.176
, pp. 115-122
-
-
Pearse, A.J.1
Wolf, R.E.2
-
30
-
-
0036182097
-
Positive growth rate-dependent regulation of the pdxA, ksgA, and pdxB genes of Escherichia coli K-12
-
COI: 1:CAS:528:DC%2BD38XhtlKntrg%3D, PID: 11844765
-
Pease AJ, Roa BR, Luo W, Winkler ME (2002) Positive growth rate-dependent regulation of the pdxA, ksgA, and pdxB genes of Escherichia coli K-12. J Bacteriol 184:1359–1369
-
(2002)
J Bacteriol
, vol.184
, pp. 1359-1369
-
-
Pease, A.J.1
Roa, B.R.2
Luo, W.3
Winkler, M.E.4
-
31
-
-
0017861127
-
Patterns of protein-synthesis in Escherichia coli—catalog of amount of 140 individual proteins at different growth-rates
-
COI: 1:CAS:528:DyaE1cXkslarsrw%3D, PID: 352533
-
Pedersen S, Bloch PL, Reeh S, Neidhardt FC (1978) Patterns of protein-synthesis in Escherichia coli—catalog of amount of 140 individual proteins at different growth-rates. Cell 14:179–190
-
(1978)
Cell
, vol.14
, pp. 179-190
-
-
Pedersen, S.1
Bloch, P.L.2
Reeh, S.3
Neidhardt, F.C.4
-
32
-
-
0001974845
-
The chemical composition of wood
-
Roswell R, (ed), American Chemical Society, Washington, DC
-
Pettersen RC (1984) The chemical composition of wood. In: Roswell R (ed) The chemistry of solid wood. American Chemical Society, Washington, DC, pp 57–126
-
(1984)
The chemistry of solid wood
, pp. 57-126
-
-
Pettersen, R.C.1
-
33
-
-
0029867372
-
Cation and sugar selectivity determinants in a novel family of transport proteins
-
COI: 1:CAS:528:DyaK28XhslKjurw%3D, PID: 8830272
-
Poolman B, Knolm J, van der Does C, Henderson PJF, Liang WJ, Leblanc G, Pourcher T, Musveteau I (1996) Cation and sugar selectivity determinants in a novel family of transport proteins. Mol Microbiol 19:911–922
-
(1996)
Mol Microbiol
, vol.19
, pp. 911-922
-
-
Poolman, B.1
Knolm, J.2
van der Does, C.3
Henderson, P.J.F.4
Liang, W.J.5
Leblanc, G.6
Pourcher, T.7
Musveteau, I.8
-
34
-
-
2442646490
-
The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition
-
COI: 1:CAS:528:DC%2BD2cXks1Cqt7o%3D, PID: 15150243
-
Ren CP, Chaudhuri RR, Fivian A, Bailey CM, Antonio M, Barnes WA, Pallen MJ (2004) The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition. J Bacteriol 186:3547–3560
-
(2004)
J Bacteriol
, vol.186
, pp. 3547-3560
-
-
Ren, C.P.1
Chaudhuri, R.R.2
Fivian, A.3
Bailey, C.M.4
Antonio, M.5
Barnes, W.A.6
Pallen, M.J.7
-
35
-
-
0031882597
-
Perturbation of anion balance during inhibition of growth of Escherichia coli by weak acids
-
COI: 1:CAS:528:DyaK1cXhtVGls7w%3D, PID: 9473028
-
Roe AJ, Mclaggan D, Davidson I, O’Byrne C, Booth IR (1998) Perturbation of anion balance during inhibition of growth of Escherichia coli by weak acids. J Bacteriol 180:767–772
-
(1998)
J Bacteriol
, vol.180
, pp. 767-772
-
-
Roe, A.J.1
Mclaggan, D.2
Davidson, I.3
O’Byrne, C.4
Booth, I.R.5
-
36
-
-
0036061941
-
Inhibition of Escherichia coli growth by acetic acid: a problem with methionine biosynthesis and homocysteine toxicity
-
COI: 1:CAS:528:DC%2BD38XlsFKktbw%3D
-
Roe AJ, O’Byrne C, Mclaggan D, Booth IR (2002) Inhibition of Escherichia coli growth by acetic acid: a problem with methionine biosynthesis and homocysteine toxicity. Microbiol 148:2215–2222
-
(2002)
Microbiol
, vol.148
, pp. 2215-2222
-
-
Roe, A.J.1
O’Byrne, C.2
Mclaggan, D.3
Booth, I.R.4
-
37
-
-
34247473843
-
Effect of lignocellulose-derived inhibitors on growth of and ethanol production by growth-arrested Corynebacterium glutamicum R
-
Sakai S, Tsuchida Y, Nakamoto H, Okino S, Ichihashi O, Kawaguchi H, Watanabe T, Inui M, Yukawa H (2007) Effect of lignocellulose-derived inhibitors on growth of and ethanol production by growth-arrested Corynebacterium glutamicum R. Appl Environ Microbiol 73:6349–6353
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 6349-6353
-
-
Sakai, S.1
Tsuchida, Y.2
Nakamoto, H.3
Okino, S.4
Ichihashi, O.5
Kawaguchi, H.6
Watanabe, T.7
Inui, M.8
Yukawa, H.9
-
38
-
-
0035232377
-
Evolutionary engineering of industrially important microbial phenotypes
-
COI: 1:CAS:528:DC%2BD3MXotlKitr0%3D, PID: 11816810
-
Sauer U (2001) Evolutionary engineering of industrially important microbial phenotypes. Adv Biochem Eng Biotechnol 73:129–169
-
(2001)
Adv Biochem Eng Biotechnol
, vol.73
, pp. 129-169
-
-
Sauer, U.1
-
39
-
-
0032526956
-
Transcription activation at Class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase α subunit
-
COI: 1:CAS:528:DyaK1cXksFCltLY%3D, PID: 9628879
-
Savery NJ, Lloyd GS, Kainz M, Gaal T, Ross W, Ebright RH, Gourse RL, Busby SJW (1998) Transcription activation at Class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase α subunit. EMBO J 17:3439–3447
-
(1998)
EMBO J
, vol.17
, pp. 3439-3447
-
-
Savery, N.J.1
Lloyd, G.S.2
Kainz, M.3
Gaal, T.4
Ross, W.5
Ebright, R.H.6
Gourse, R.L.7
Busby, S.J.W.8
-
40
-
-
0036206935
-
Determinants of the C-terminal domain of the Escherichia coli RNA polymerase α subunit important for transcription at Class I Cyclic AMP Receptor Protein-dependent promoters
-
COI: 1:CAS:528:DC%2BD38Xis1Kqt78%3D, PID: 11914359
-
Savery NJ, Lloyd GS, Busby SJW, Thomas MS, Ebright RH, Gourse RL (2002) Determinants of the C-terminal domain of the Escherichia coli RNA polymerase α subunit important for transcription at Class I Cyclic AMP Receptor Protein-dependent promoters. J Bacteriol 184:2273–2280
-
(2002)
J Bacteriol
, vol.184
, pp. 2273-2280
-
-
Savery, N.J.1
Lloyd, G.S.2
Busby, S.J.W.3
Thomas, M.S.4
Ebright, R.H.5
Gourse, R.L.6
-
41
-
-
33846950348
-
Challenges in engineering microbes for biofuels production
-
COI: 1:CAS:528:DC%2BD2sXhsVShsrg%3D, PID: 17289987
-
Stephanopoulos G (2007) Challenges in engineering microbes for biofuels production. Science 315:801–804
-
(2007)
Science
, vol.315
, pp. 801-804
-
-
Stephanopoulos, G.1
-
42
-
-
0036159062
-
Hydrolysis of lignocellulosic materials for ethanol production: a review
-
COI: 1:CAS:528:DC%2BD38Xptleluw%3D%3D
-
Sun Y, Cheng JY (2002) Hydrolysis of lignocellulosic materials for ethanol production: a review. Biores Technol 83:1–11
-
(2002)
Biores Technol
, vol.83
, pp. 1-11
-
-
Sun, Y.1
Cheng, J.Y.2
-
43
-
-
0033403889
-
Effects of acetate on the growth and fermentation performance of Escherichia coli KO11
-
COI: 1:CAS:528:DC%2BD3cXntleqtA%3D%3D, PID: 10652785
-
Takahashi CM, Takahashi DF, Carvalhal MLC, Alterthum F (1999) Effects of acetate on the growth and fermentation performance of Escherichia coli KO11. Appl Biochem Biotechnol 81:193–203
-
(1999)
Appl Biochem Biotechnol
, vol.81
, pp. 193-203
-
-
Takahashi, C.M.1
Takahashi, D.F.2
Carvalhal, M.L.C.3
Alterthum, F.4
-
44
-
-
0028809521
-
Mapping of the OxyR protein contact site in the C-terminal region of RNA polymerase α subunit
-
COI: 1:CAS:528:DyaK2MXpsFKrt7s%3D, PID: 7592462
-
Tao K, Zou C, Fujita N, Ishihama A (1995) Mapping of the OxyR protein contact site in the C-terminal region of RNA polymerase α subunit. J Bacteriol 177:6740–6744
-
(1995)
J Bacteriol
, vol.177
, pp. 6740-6744
-
-
Tao, K.1
Zou, C.2
Fujita, N.3
Ishihama, A.4
-
45
-
-
0032693327
-
Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media
-
COI: 1:CAS:528:DyaK1MXmvVWqsr8%3D, PID: 10515934
-
Tao H, Bausch C, Richmond C, Blattner FR, Conway T (1999) Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. J Bacteriol 181:6425–6440
-
(1999)
J Bacteriol
, vol.181
, pp. 6425-6440
-
-
Tao, H.1
Bausch, C.2
Richmond, C.3
Blattner, F.R.4
Conway, T.5
-
46
-
-
84875634162
-
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
-
PID: 22517427
-
Thorvaldsdóttir H, Robinson JT, Mesirov JP (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14:178–192
-
(2013)
Brief Bioinform
, vol.14
, pp. 178-192
-
-
Thorvaldsdóttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
47
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
PID: 19165319
-
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, El Karoui M, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Saint Ruf C, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EPC, Denamu E (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5:e1000344
-
(2009)
PLoS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
Bidet, P.6
Bingen, E.7
Bonacorsi, S.8
Bouchier, C.9
Bouvet, O.10
Calteau, A.11
Chiapello, H.12
Clermont, O.13
Cruveiller, S.14
Danchin, A.15
Diard, M.16
Dossat, C.17
El Karoui, M.18
Frapy, E.19
Garry, L.20
Ghigo, J.M.21
Gilles, A.M.22
Johnson, J.23
Le Bouguénec, C.24
Lescat, M.25
Mangenot, S.26
Martinez-Jéhanne, V.27
Matic, I.28
Nassif, X.29
Oztas, S.30
Petit, M.A.31
Pichon, C.32
Rouy, Z.33
Saint Ruf, C.34
Schneider, D.35
Tourret, J.36
Vacherie, B.37
Vallenet, D.38
Médigue, C.39
Rocha, E.P.C.40
Denamu, E.41
more..
-
48
-
-
84937611588
-
Adaptation and tolerance to bacteria against acetic acid
-
PID: 26142387
-
Trĉek J, Mira NP, Jarboe LR (2015) Adaptation and tolerance to bacteria against acetic acid. Appl Microbiol Biotechnol 99:6215–6229
-
(2015)
Appl Microbiol Biotechnol
, vol.99
, pp. 6215-6229
-
-
Trĉek, J.1
Mira, N.P.2
Jarboe, L.R.3
-
49
-
-
78651462013
-
Conditioning hardwood-derived pre-pulping extracts for use in fermentation through removal and recovery of acetic acid using trioctylphosphine oxide (TOPO)
-
COI: 1:CAS:528:DC%2BC3MXkvFCrt7k%3D
-
Um BH, Friedman B, van Walsum GP (2011) Conditioning hardwood-derived pre-pulping extracts for use in fermentation through removal and recovery of acetic acid using trioctylphosphine oxide (TOPO). Holzforschung 65:51–58
-
(2011)
Holzforschung
, vol.65
, pp. 51-58
-
-
Um, B.H.1
Friedman, B.2
van Walsum, G.P.3
-
50
-
-
70349481485
-
Enhanced recombinant protein synthesis in batch and fed-batch Escherichia coli fermentation based on removal of inhibitory acetate by electrodialysis
-
COI: 1:CAS:528:DC%2BD1MXpvFars7c%3D
-
Wong M, Wright M, Woodley JM, Lye GJ (2009) Enhanced recombinant protein synthesis in batch and fed-batch Escherichia coli fermentation based on removal of inhibitory acetate by electrodialysis. J Chem Technol Biotechnol 84:1284–1291
-
(2009)
J Chem Technol Biotechnol
, vol.84
, pp. 1284-1291
-
-
Wong, M.1
Wright, M.2
Woodley, J.M.3
Lye, G.J.4
-
51
-
-
77954536561
-
Application of bipolar electrodialysis to E. coli fermentation for simultaneous acetate removal and pH control
-
COI: 1:CAS:528:DC%2BC3cXoslahsbg%3D, PID: 20383737
-
Wong M, Woodley JM, Lye GJ (2010) Application of bipolar electrodialysis to E. coli fermentation for simultaneous acetate removal and pH control. Biotechnol Lett 32:1053–1057
-
(2010)
Biotechnol Lett
, vol.32
, pp. 1053-1057
-
-
Wong, M.1
Woodley, J.M.2
Lye, G.J.3
-
52
-
-
84861969435
-
Simultaneous utilization of glucose, xylose and arabinonse in the presence of acetate by a consortium of Escherichia coli strains
-
Xia T, Eiteman MA, Altman E (2012) Simultaneous utilization of glucose, xylose and arabinonse in the presence of acetate by a consortium of Escherichia coli strains. Microb. Cell Fact. 11:77 doi:10.1186/1475-2859-11-77
-
(2012)
Microb. Cell Fact.
, vol.11
, pp. 77
-
-
Xia, T.1
Eiteman, M.A.2
Altman, E.3
-
53
-
-
0030884568
-
Amino acid residues in the α-subunit C-terminal domain of Escherichia coli RNA polymerase involved in activation of transcription from the mtr promoter
-
COI: 1:CAS:528:DyaK2sXmsFCisbk%3D, PID: 9324270
-
Yang J, Murakami K, Camakaris H, Fujita N, Ishihama A, Pittard AJ (1997) Amino acid residues in the α-subunit C-terminal domain of Escherichia coli RNA polymerase involved in activation of transcription from the mtr promoter. J Bacteriol 179:6187–6191
-
(1997)
J Bacteriol
, vol.179
, pp. 6187-6191
-
-
Yang, J.1
Murakami, K.2
Camakaris, H.3
Fujita, N.4
Ishihama, A.5
Pittard, A.J.6
|