-
1
-
-
0036305955
-
Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters
-
Aiyar S.E., McLeod S.M., Ross W., Hirvonen C.A., Thomas M.S., Johnson R.C., and Gourse R.L. Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters. J. Mol. Biol. 316 (2002) 501-516
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 501-516
-
-
Aiyar, S.E.1
McLeod, S.M.2
Ross, W.3
Hirvonen, C.A.4
Thomas, M.S.5
Johnson, R.C.6
Gourse, R.L.7
-
2
-
-
40549107989
-
Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo
-
Ausubel F.A., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Struhl K. (Eds), Wiley, New York
-
Aparicio O.M., Geisberg J.V., and Struhl K. Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo. In: Ausubel F.A., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Struhl K. (Eds). Current Protocols in Molecular Biology (2004), Wiley, New York 21.3.1-21.3.32
-
(2004)
Current Protocols in Molecular Biology
-
-
Aparicio, O.M.1
Geisberg, J.V.2
Struhl, K.3
-
3
-
-
0141925902
-
Transcription regulation by tandem-bound FNR at Escherichia coli promoters
-
Barnard A.M., Green J., and Busby S.J. Transcription regulation by tandem-bound FNR at Escherichia coli promoters. J. Bacteriol. 185 (2003) 5993-6004
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5993-6004
-
-
Barnard, A.M.1
Green, J.2
Busby, S.J.3
-
4
-
-
0025651896
-
Mutations that alter the ability of the Escherichia coli cyclic AMP receptor protein to activate transcription
-
Bell A., Gaston K., Williams R., Chapman K., Kolb A., Buc H., Minchin S., Williams J., and Busby S. Mutations that alter the ability of the Escherichia coli cyclic AMP receptor protein to activate transcription. Nucleic Acids Res. 18 (1990) 7243-7250
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 7243-7250
-
-
Bell, A.1
Gaston, K.2
Williams, R.3
Chapman, K.4
Kolb, A.5
Buc, H.6
Minchin, S.7
Williams, J.8
Busby, S.9
-
5
-
-
0033818258
-
Suppression of FNR-dependent transcription activation at the Escherichia coli nir promoter by Fis, IHF and H-NS: Modulation of transcription initiation by a complex nucleo-protein assembly
-
Browning D.F., Cole J.A., and Busby S.J. Suppression of FNR-dependent transcription activation at the Escherichia coli nir promoter by Fis, IHF and H-NS: Modulation of transcription initiation by a complex nucleo-protein assembly. Mol. Microbiol. 37 (2000) 1258-1269
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 1258-1269
-
-
Browning, D.F.1
Cole, J.A.2
Busby, S.J.3
-
6
-
-
0010870712
-
Secrets of bacterial transcription initiation taught by the Escherichia coli FNR protein
-
Hodgson D., and Thomas C. (Eds), Cambridge University Press, Cambridge, UK
-
Browning D., Lee D., Green J., and Busby S. Secrets of bacterial transcription initiation taught by the Escherichia coli FNR protein. In: Hodgson D., and Thomas C. (Eds). Signals, Switches, Regulons and Cascades: Control of Bacterial Gene Expression (2002), Cambridge University Press, Cambridge, UK 127-142
-
(2002)
Signals, Switches, Regulons and Cascades: Control of Bacterial Gene Expression
, pp. 127-142
-
-
Browning, D.1
Lee, D.2
Green, J.3
Busby, S.4
-
7
-
-
0028061282
-
Promoter structure, promoter recognition and transcription activation in prokaryotes
-
Busby S.J., and Ebright R.H. Promoter structure, promoter recognition and transcription activation in prokaryotes. Cell 79 (1994) 743-746
-
(1994)
Cell
, vol.79
, pp. 743-746
-
-
Busby, S.J.1
Ebright, R.H.2
-
8
-
-
0032698634
-
Transcription activation by catabolite activator protein (CAP)
-
Busby S., and Ebright R. Transcription activation by catabolite activator protein (CAP). J. Mol. Biol. 293 (1999) 199-213
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 199-213
-
-
Busby, S.1
Ebright, R.2
-
9
-
-
0037756788
-
Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element-and activator-dependent transcription
-
Chen H., Tang H., and Ebright R.H. Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element-and activator-dependent transcription. Mol. Cell. 11 (2003) 1621-1633
-
(2003)
Mol. Cell.
, vol.11
, pp. 1621-1633
-
-
Chen, H.1
Tang, H.2
Ebright, R.H.3
-
10
-
-
33644945692
-
PCR based tandem epitope tagging system for Escherichia coli genome engineering
-
Cho B.K., Knight E.M., and Palsson B.O. PCR based tandem epitope tagging system for Escherichia coli genome engineering. Biotechniques 40 (2006) 67-72
-
(2006)
Biotechniques
, vol.40
, pp. 67-72
-
-
Cho, B.K.1
Knight, E.M.2
Palsson, B.O.3
-
12
-
-
18444369954
-
The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin
-
Dame R.T. The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin. Mol. Microbiol. 56 (2005) 858-870
-
(2005)
Mol. Microbiol.
, vol.56
, pp. 858-870
-
-
Dame, R.T.1
-
13
-
-
33745460953
-
In vivo dissection of the Helicobacter pylori Fur regulatory circuit by genome-wide location analysis
-
Danielli A., Roncarati D., Delany I., Chiarini V., Rappuoli R., and Scarlato V. In vivo dissection of the Helicobacter pylori Fur regulatory circuit by genome-wide location analysis. J. Bacteriol. 188 (2006) 4654-4662
-
(2006)
J. Bacteriol.
, vol.188
, pp. 4654-4662
-
-
Danielli, A.1
Roncarati, D.2
Delany, I.3
Chiarini, V.4
Rappuoli, R.5
Scarlato, V.6
-
14
-
-
0030907304
-
Activation of prokaryotic transcription through arbitrary protein-protein contacts
-
Dove S.L., Joung J.K., and Hochschild A. Activation of prokaryotic transcription through arbitrary protein-protein contacts. Nature 386 (1997) 627-630
-
(1997)
Nature
, vol.386
, pp. 627-630
-
-
Dove, S.L.1
Joung, J.K.2
Hochschild, A.3
-
15
-
-
0038354921
-
Region 4 of sigma as a target for transcription regulation
-
Dove S.L., Darst S.A., and Hochschild A. Region 4 of sigma as a target for transcription regulation. Mol. Microbiol. 48 (2003) 863-874
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 863-874
-
-
Dove, S.L.1
Darst, S.A.2
Hochschild, A.3
-
16
-
-
47049086640
-
Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR
-
Efromovich S., Grainger D.C., Bodenmiller D., and Spiro S. Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR. Methods Enzymol. 437 (2008) 209-231
-
(2008)
Methods Enzymol.
, vol.437
, pp. 209-231
-
-
Efromovich, S.1
Grainger, D.C.2
Bodenmiller, D.3
Spiro, S.4
-
17
-
-
8844240734
-
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis
-
Eichenberger P., Fujita M., Jensen S.T., Conlon E.M., Rudner D.Z., Wang S.T., Ferguson C., Haga K., Sato T., Liu J.S., and Losick R. The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis. PLoS Biol. 2 (2004) e328
-
(2004)
PLoS Biol.
, vol.2
-
-
Eichenberger, P.1
Fujita, M.2
Jensen, S.T.3
Conlon, E.M.4
Rudner, D.Z.5
Wang, S.T.6
Ferguson, C.7
Haga, K.8
Sato, T.9
Liu, J.S.10
Losick, R.11
-
18
-
-
0026343438
-
Escherichia coli catabolite activator protein mutants deficient in positive control of lac operon transcription
-
Eschenlauer A., and Reznikoff W. Escherichia coli catabolite activator protein mutants deficient in positive control of lac operon transcription. J. Bacteriol. 173 (1991) 5024-5029
-
(1991)
J. Bacteriol.
, vol.173
, pp. 5024-5029
-
-
Eschenlauer, A.1
Reznikoff, W.2
-
19
-
-
0030045015
-
DNA-binding determinants of the alpha subunit of RNA polymerase: Novel DNA-binding domain architecture
-
Gaal T., Ross W., Blatter E., Tang H., Jia X., Krishnan V., Assa-Munt N., Ebright R., and Gourse R. DNA-binding determinants of the alpha subunit of RNA polymerase: Novel DNA-binding domain architecture. Genes Dev. 10 (1996) 16-26
-
(1996)
Genes Dev.
, vol.10
, pp. 16-26
-
-
Gaal, T.1
Ross, W.2
Blatter, E.3
Tang, H.4
Jia, X.5
Krishnan, V.6
Assa-Munt, N.7
Ebright, R.8
Gourse, R.9
-
20
-
-
4944225301
-
Genomic studies with Escherichia coli MelR protein: Applications of chromatin immunoprecipitation and microarrays
-
Grainger D.C., Overton T.W., Reppas N., Wade J.T., Tamai E., Hobman J.L., Constantinidou C., Struhl K., Church G., and Busby S.J. Genomic studies with Escherichia coli MelR protein: Applications of chromatin immunoprecipitation and microarrays. J. Bacteriol. 186 (2004) 6938-6943
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6938-6943
-
-
Grainger, D.C.1
Overton, T.W.2
Reppas, N.3
Wade, J.T.4
Tamai, E.5
Hobman, J.L.6
Constantinidou, C.7
Struhl, K.8
Church, G.9
Busby, S.J.10
-
21
-
-
29144431508
-
Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome
-
Grainger D.C., Hurd D., Harrison M., Holdstock J., and Busby S.J. Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome. Proc. Natl. Acad. Sci. 102 (2005) 17693-17698
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 17693-17698
-
-
Grainger, D.C.1
Hurd, D.2
Harrison, M.3
Holdstock, J.4
Busby, S.J.5
-
22
-
-
33750000118
-
Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome
-
Grainger D.C., Hurd D., Goldberg M.D., and Busby S.J. Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome. Nucleic Acids Res. 34 (2006) 4642-4652
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 4642-4652
-
-
Grainger, D.C.1
Hurd, D.2
Goldberg, M.D.3
Busby, S.J.4
-
23
-
-
33846659467
-
Transcription factor distribution in Escherichia coli: Studies with FNR protein
-
Grainger D.C., Aiba H., Hurd D., Browning D.F., and Busby S.J. Transcription factor distribution in Escherichia coli: Studies with FNR protein. Nucleic Acids Res. 35 (2007) 269-278
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 269-278
-
-
Grainger, D.C.1
Aiba, H.2
Hurd, D.3
Browning, D.F.4
Busby, S.J.5
-
24
-
-
44249126516
-
Selective repression by Fis and H-NS at the Escherichia coli dps promoter
-
Grainger D.C., Goldberg M.D., Lee D.J., and Busby S.J.W. Selective repression by Fis and H-NS at the Escherichia coli dps promoter. Mol. Microbiol. 68 (2008) 1366-1377
-
(2008)
Mol. Microbiol.
, vol.68
, pp. 1366-1377
-
-
Grainger, D.C.1
Goldberg, M.D.2
Lee, D.J.3
Busby, S.J.W.4
-
25
-
-
0030271631
-
Activation and repression of E. coli promoters
-
Gralla J.D. Activation and repression of E. coli promoters. Curr. Opin. Genet. Dev. 6 (1996) 526-530
-
(1996)
Curr. Opin. Genet. Dev.
, vol.6
, pp. 526-530
-
-
Gralla, J.D.1
-
26
-
-
0000776061
-
Bacterial sigma factors
-
McKnight S.L., and Yamamoto K.R. (Eds), Cold Spring Harbour Press, New York
-
Gross C.A., Lonetto M., and Losick R. Bacterial sigma factors. In: McKnight S.L., and Yamamoto K.R. (Eds). Transcriptional Regulation (1992), Cold Spring Harbour Press, New York 129-176
-
(1992)
Transcriptional Regulation
, pp. 129-176
-
-
Gross, C.A.1
Lonetto, M.2
Losick, R.3
-
27
-
-
0032459427
-
The functional and regulatory roles of sigma factors in transcription
-
Gross C.A., Chan C., Dombroski A., Gruber T., Sharp M., Tupy J., and Young B. The functional and regulatory roles of sigma factors in transcription. Cold Spring Harb. Symp. Quant. Biol. 63 (1998) 141-155
-
(1998)
Cold Spring Harb. Symp. Quant. Biol.
, vol.63
, pp. 141-155
-
-
Gross, C.A.1
Chan, C.2
Dombroski, A.3
Gruber, T.4
Sharp, M.5
Tupy, J.6
Young, B.7
-
28
-
-
0023918675
-
Structure and function of bacterial sigma factors
-
Helmann J., and Chamberlin M. Structure and function of bacterial sigma factors. Ann. Rev. Biochem. 57 (1988) 839-872
-
(1988)
Ann. Rev. Biochem.
, vol.57
, pp. 839-872
-
-
Helmann, J.1
Chamberlin, M.2
-
29
-
-
0030728648
-
Adaptation of gene expression in stationary phase bacteria
-
Ishihama A. Adaptation of gene expression in stationary phase bacteria. Curr. Opin. Gen. Dev. 7 (1997) 582-588
-
(1997)
Curr. Opin. Gen. Dev.
, vol.7
, pp. 582-588
-
-
Ishihama, A.1
-
30
-
-
0035945567
-
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
-
Iyer V.R., Horak C.E., Scafe C.S., Botstein D., Snyder M., and Brown P.O. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409 (2001) 533-538
-
(2001)
Nature
, vol.409
, pp. 533-538
-
-
Iyer, V.R.1
Horak, C.E.2
Scafe, C.S.3
Botstein, D.4
Snyder, M.5
Brown, P.O.6
-
31
-
-
33750529760
-
Coupling the distribution of RNA polymerase to global gene regulation and the dynamic structure of the bacterial nucleoid in Escherichia coli
-
Jin D.J., and Cabrera J.E. Coupling the distribution of RNA polymerase to global gene regulation and the dynamic structure of the bacterial nucleoid in Escherichia coli. J. Struct. Biol. 156 (2006) 284-291
-
(2006)
J. Struct. Biol.
, vol.156
, pp. 284-291
-
-
Jin, D.J.1
Cabrera, J.E.2
-
32
-
-
0037007079
-
Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle
-
Laub M.T., Chen S.L., Shapiro L., and McAdams H.H. Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle. Proc. Natl. Acad. Sci. 99 (2002) 4632-4637
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 4632-4637
-
-
Laub, M.T.1
Chen, S.L.2
Shapiro, L.3
McAdams, H.H.4
-
33
-
-
0033082849
-
Interactions between the Escherichia coli cAMP receptor protein and the C-terminal domain of the α subunit of RNA polymerase at class I promoters
-
Law E., Savery N., and Busby S. Interactions between the Escherichia coli cAMP receptor protein and the C-terminal domain of the α subunit of RNA polymerase at class I promoters. Biochem. J. 337 (1999) 415-423
-
(1999)
Biochem. J.
, vol.337
, pp. 415-423
-
-
Law, E.1
Savery, N.2
Busby, S.3
-
34
-
-
0033822626
-
Analysis of interactions between activating region 1 of Escherichia coli FNR protein and the C-terminal domain of the RNA polymerase alpha subunit: Use of alanine scanning and suppression genetics
-
Lee D.J., Wing H.J., Savery N.J., and Busby S.J. Analysis of interactions between activating region 1 of Escherichia coli FNR protein and the C-terminal domain of the RNA polymerase alpha subunit: Use of alanine scanning and suppression genetics. Mol. Microbiol. 37 (2000) 1032-1040
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 1032-1040
-
-
Lee, D.J.1
Wing, H.J.2
Savery, N.J.3
Busby, S.J.4
-
35
-
-
0032078948
-
Transcription activation by Escherichia coli FNR protein: Similarities to, and differences from, the CRP paradigm
-
Li B., Wing H., Lee D., Wu H.C., and Busby S. Transcription activation by Escherichia coli FNR protein: Similarities to, and differences from, the CRP paradigm. Nucleic Acids Res. 26 (1998) 2075-2081
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2075-2081
-
-
Li, B.1
Wing, H.2
Lee, D.3
Wu, H.C.4
Busby, S.5
-
37
-
-
33748055114
-
H-NS mediates the silencing of laterally acquired genes in bacteria
-
Lucchini S., Rowley G., Goldberg M.D., Hurd D., Harrison M., and Hinton J.C. H-NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathog. 2 (2006) e81
-
(2006)
PLoS Pathog.
, vol.2
-
-
Lucchini, S.1
Rowley, G.2
Goldberg, M.D.3
Hurd, D.4
Harrison, M.5
Hinton, J.C.6
-
38
-
-
0242386460
-
Identifying global regulators in transcriptional regulatory networks in bacteria
-
Martínez-Antonio A., and Collado-Vides J. Identifying global regulators in transcriptional regulatory networks in bacteria. Curr. Opin. Microbiol. 6 (2003) 482-489
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 482-489
-
-
Martínez-Antonio, A.1
Collado-Vides, J.2
-
39
-
-
0035075425
-
Control of transcription by nucleoid proteins
-
McLeod S.M., and Johnson R.C. Control of transcription by nucleoid proteins. Curr. Opin. Microbiol. 4 (2001) 152-159
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 152-159
-
-
McLeod, S.M.1
Johnson, R.C.2
-
40
-
-
0036304274
-
The C-terminal domains of the RNA polymerase alpha subunits: Contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter
-
McLeod S.M., Aiyar S.E., Gourse R.L., and Johnson R.C. The C-terminal domains of the RNA polymerase alpha subunits: Contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter. J. Mol. Biol. 316 (2002) 517-529
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 517-529
-
-
McLeod, S.M.1
Aiyar, S.E.2
Gourse, R.L.3
Johnson, R.C.4
-
41
-
-
0037336206
-
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis
-
Molle V., Nakaura Y., Shivers R.P., Yamaguchi H., Losick R., Fujita Y., and Sonenshein A.L. Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis. J. Bacteriol. 185 (2003) 1911-1922
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1911-1922
-
-
Molle, V.1
Nakaura, Y.2
Shivers, R.P.3
Yamaguchi, H.4
Losick, R.5
Fujita, Y.6
Sonenshein, A.L.7
-
42
-
-
0346256789
-
The Spo0A regulon of Bacillus subtilis
-
Molle V., Fujita M., Jensen S.T., Eichenberger P., González-Pastor J.E., Liu J.S., and Losick R. The Spo0A regulon of Bacillus subtilis. Mol. Microbiol. 50 (2003) 1683-1701
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 1683-1701
-
-
Molle, V.1
Fujita, M.2
Jensen, S.T.3
Eichenberger, P.4
González-Pastor, J.E.5
Liu, J.S.6
Losick, R.7
-
43
-
-
0029756802
-
Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element
-
Murakami K., Fujita N., and Ishihama A. Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element. EMBO J. 15 (1996) 4358-4367
-
(1996)
EMBO J.
, vol.15
, pp. 4358-4367
-
-
Murakami, K.1
Fujita, N.2
Ishihama, A.3
-
44
-
-
34548182818
-
Repression by binding of H-NS within the transcription unit
-
Nagarajavel V., Madhusudan S., Dole S., Rahmouni A.R., and Schnetz K. Repression by binding of H-NS within the transcription unit. J. Biol. Chem. 282 (2007) 23622-23630
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 23622-23630
-
-
Nagarajavel, V.1
Madhusudan, S.2
Dole, S.3
Rahmouni, A.R.4
Schnetz, K.5
-
45
-
-
33746008173
-
Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella
-
Navarre W.W., Porwollik S., Wang Y., McClelland M., Rosen H., Libby S.J., and Fang F.C. Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 313 (2006) 236-238
-
(2006)
Science
, vol.313
, pp. 236-238
-
-
Navarre, W.W.1
Porwollik, S.2
Wang, Y.3
McClelland, M.4
Rosen, H.5
Libby, S.J.6
Fang, F.C.7
-
46
-
-
0028096854
-
Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP). I. Saturation and alanine-scanning mutagenesis
-
Niu W., Zhou Y., Dong Q., Ebright Y., and Ebright R. Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP). I. Saturation and alanine-scanning mutagenesis. J. Mol. Biol. 243 (1994) 595-602
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 595-602
-
-
Niu, W.1
Zhou, Y.2
Dong, Q.3
Ebright, Y.4
Ebright, R.5
-
47
-
-
0030582675
-
Transcription activation at class II CAP-dependent promoters: Two interactions between CAP and RNA polymerase
-
Niu W., Kim Y., Tau G., Heyduk T., and Ebright R. Transcription activation at class II CAP-dependent promoters: Two interactions between CAP and RNA polymerase. Cell 87 (1996) 1123-1134
-
(1996)
Cell
, vol.87
, pp. 1123-1134
-
-
Niu, W.1
Kim, Y.2
Tau, G.3
Heyduk, T.4
Ebright, R.5
-
48
-
-
33750898424
-
Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase
-
Oshima T., Ishikawa S., Kurokawa K., Aiba H., and Ogasawara N. Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase. DNA Res. 13 (2006) 141-153
-
(2006)
DNA Res.
, vol.13
, pp. 141-153
-
-
Oshima, T.1
Ishikawa, S.2
Kurokawa, K.3
Aiba, H.4
Ogasawara, N.5
-
49
-
-
0030052931
-
Transcriptional activation by protein-induced DNA bending: Evidence for a DNA structural transmission model
-
Parekh B., and Hatfield G. Transcriptional activation by protein-induced DNA bending: Evidence for a DNA structural transmission model. Proc. Natl. Acad. Sci. USA 93 (1996) 1173-1177
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 1173-1177
-
-
Parekh, B.1
Hatfield, G.2
-
50
-
-
0028230951
-
Factor-independent activation of rrnB P1-an "extended" promoter with an upstream element that dramatically increases promoter strength
-
Rao L., Ross W., Appleman J., Gaal T., Leirmo S., Schlax P., Record M., and Gourse R. Factor-independent activation of rrnB P1-an "extended" promoter with an upstream element that dramatically increases promoter strength. J. Mol. Biol. 235 (1994) 1421-1435
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1421-1435
-
-
Rao, L.1
Ross, W.2
Appleman, J.3
Gaal, T.4
Leirmo, S.5
Schlax, P.6
Record, M.7
Gourse, R.8
-
51
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren B., Robert F., Wyrick J.J., Aparicio O., Jennings E.G., Simon I., Zeitlinger J., Schreiber J., Hannett N., Kanin E., Volkert T.L., Wilson C.J., et al. Genome-wide location and function of DNA binding proteins. Science 290 (2000) 2306-2309
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
Zeitlinger, J.7
Schreiber, J.8
Hannett, N.9
Kanin, E.10
Volkert, T.L.11
Wilson, C.J.12
-
52
-
-
0030861863
-
Transcription activation at Class II CRP-dependent promoters: The role of different activating regions
-
Rhodius V., West D., Webster C., Busby S., and Savery N. Transcription activation at Class II CRP-dependent promoters: The role of different activating regions. Nucleic Acids Res. 25 (1997) 326-332
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 326-332
-
-
Rhodius, V.1
West, D.2
Webster, C.3
Busby, S.4
Savery, N.5
-
53
-
-
0038522852
-
An intersubunit contact stimulating transcription initiation by E. coli RNA polymerase: Interaction of the alpha C-terminal domain and sigma region 4
-
Ross W., Schneider D.A., Paul B.J., Mertens A., and Gourse R.L. An intersubunit contact stimulating transcription initiation by E. coli RNA polymerase: Interaction of the alpha C-terminal domain and sigma region 4. Genes Dev. 17 (2003) 1293-1307
-
(2003)
Genes Dev.
, vol.17
, pp. 1293-1307
-
-
Ross, W.1
Schneider, D.A.2
Paul, B.J.3
Mertens, A.4
Gourse, R.L.5
-
54
-
-
0030605507
-
Protein-protein interactions during transcription activation: The case of the Escherichia coli cyclic AMP receptor protein
-
Savery N., Rhodius V., and Busby S. Protein-protein interactions during transcription activation: The case of the Escherichia coli cyclic AMP receptor protein. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 351 (1996) 543-550
-
(1996)
Philos. Trans. R. Soc. Lond. B. Biol. Sci.
, vol.351
, pp. 543-550
-
-
Savery, N.1
Rhodius, V.2
Busby, S.3
-
55
-
-
0036206935
-
Determinants of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit important for transcription at class I cyclic AMP receptor protein-dependent promoters
-
Savery N.J., Lloyd G.S., Busby S.J., Thomas M.S., Ebright R.H., and Gourse R.L. Determinants of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit important for transcription at class I cyclic AMP receptor protein-dependent promoters. J. Bacteriol. 184 (2002) 2273-2280
-
(2002)
J. Bacteriol.
, vol.184
, pp. 2273-2280
-
-
Savery, N.J.1
Lloyd, G.S.2
Busby, S.J.3
Thomas, M.S.4
Ebright, R.H.5
Gourse, R.L.6
-
56
-
-
25844463677
-
70 as a co-factor for looping
-
70 as a co-factor for looping. Genes Dev. 19 (2005) 2388-2398
-
(2005)
Genes Dev.
, vol.19
, pp. 2388-2398
-
-
Shin, M.1
Song, M.2
Rhee, J.H.3
Hong, Y.4
Kim, Y.J.5
Seok, Y.J.6
Ha, K.S.7
Jung, S.H.8
Choy, H.E.9
-
59
-
-
0037126615
-
A simple mechanism for co-dependence on two activators at an Escherichia coli promoter
-
Wade J.T., Belyaeva T.A., Hyde E.I., and Busby S.J. A simple mechanism for co-dependence on two activators at an Escherichia coli promoter. EMBO J. 20 (2001) 7160-7167
-
(2001)
EMBO J.
, vol.20
, pp. 7160-7167
-
-
Wade, J.T.1
Belyaeva, T.A.2
Hyde, E.I.3
Busby, S.J.4
-
60
-
-
27644580858
-
Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites
-
Wade J.T., Reppas N.B., Church G.M., and Struhl K. Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites. Genes Dev. 19 (2005) 2619-2630
-
(2005)
Genes Dev.
, vol.19
, pp. 2619-2630
-
-
Wade, J.T.1
Reppas, N.B.2
Church, G.M.3
Struhl, K.4
-
61
-
-
0026317589
-
The role of two surface exposed loops in transcription activation by the Escherichia coli CRP and FNR proteins
-
Williams R., Bell A., Sims G., and Busby S. The role of two surface exposed loops in transcription activation by the Escherichia coli CRP and FNR proteins. Nucleic Acids Res. 19 (1991) 6705-6712
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 6705-6712
-
-
Williams, R.1
Bell, A.2
Sims, G.3
Busby, S.4
-
62
-
-
0027161386
-
Identification of the activating region of catabolite gene activator protein (CAP): Isolation and characterization of mutants of CAP specifically defective in transcription activation
-
Zhou Y., Zhang X., and Ebright R. Identification of the activating region of catabolite gene activator protein (CAP): Isolation and characterization of mutants of CAP specifically defective in transcription activation. Proc. Natl. Acad. Sci. USA 90 (1993) 6081-6085
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 6081-6085
-
-
Zhou, Y.1
Zhang, X.2
Ebright, R.3
-
63
-
-
0028109558
-
Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP). II. Role at class I and class II CAP-dependent promoters
-
Zhou Y., Merkel T., and Ebright R. Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP). II. Role at class I and class II CAP-dependent promoters. J. Mol. Biol. 243 (1994) 603-610
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 603-610
-
-
Zhou, Y.1
Merkel, T.2
Ebright, R.3
|