-
1
-
-
84981779372
-
Zwischenmolekulare Energiewanderung und Fluoreszenz
-
Forster T. Zwischenmolekulare Energiewanderung und Fluoreszenz. Ann Phys. 1948; 437:55-75.
-
(1948)
Ann Phys
, vol.437
, pp. 55-75
-
-
Forster, T.1
-
3
-
-
0036738673
-
Specific labeling of polypeptides at amino-terminal cysteine residues using Cy5-benzyl thioester
-
Schuler B, Pannell LK. Specific labeling of polypeptides at amino-terminal cysteine residues using Cy5-benzyl thioester. Bioconjug Chem. 2002;13:1039-43.
-
(2002)
Bioconjug Chem
, vol.13
, pp. 1039-1043
-
-
Schuler, B.1
Pannell, L.K.2
-
4
-
-
0034647205
-
Intein-mediated synthesis of proteins containing carbohydrates and other molecular probes
-
Tolbert TJ, Wong, CH. Intein-mediated synthesis of proteins containing carbohydrates and other molecular probes. J Am Chem Soc. 2000;122:5421-8.
-
(2000)
J am Chem Soc
, vol.122
, pp. 5421-5428
-
-
Tolbert, T.J.1
Wong, C.H.2
-
6
-
-
33645325418
-
Efficient incorporation of unnatural amino acids into proteins in Escherichia coli
-
Ryu Y Schultz PG. Efficient incorporation of unnatural amino acids into proteins in Escherichia coli. Nat Methods. 2006;3:263-5.
-
(2006)
Nat Methods
, vol.3
, pp. 263-265
-
-
Ryu Y Schultz, P.G.1
-
7
-
-
0037422608
-
Addition of the keto functional group to the genetic code of Escherichia coli
-
Wang L, Zhang Z, Brock A, Schultz PG. Addition of the keto functional group to the genetic code of Escherichia coli. Proc Natl Acad Sci U S A. 2003;100:56-61.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 56-61
-
-
Wang, L.1
Zhang, Z.2
Brock, A.3
Schultz, P.G.4
-
8
-
-
0037936779
-
Merging fluorescence resonance energy transfer and expressed protein ligation to analyze protein-protein interactions
-
Scheibner KA, Zhang Z, Cole PA. Merging fluorescence resonance energy transfer and expressed protein ligation to analyze protein-protein interactions. Anal Biochem. 2003;317:226-32.
-
(2003)
Anal Biochem
, vol.317
, pp. 226-232
-
-
Scheibner, K.A.1
Zhang, Z.2
Cole, P.A.3
-
9
-
-
0032568924
-
Expressed protein ligation, a novel method for studying protein-protein interactions in transcription
-
Severinov K, Muir TW. Expressed protein ligation, a novel method for studying protein-protein interactions in transcription. J Biol Chem. 1998;273:16205-9.
-
(1998)
J Biol Chem
, vol.273
, pp. 16205-16209
-
-
Severinov, K.1
Muir, T.W.2
-
10
-
-
0026538940
-
Initiator oligonucleotides for the combination of chemical and enzymatic RNA synthesis
-
Pitulle C, Kleineidam RG, Sproat B, Krupp G. Initiator oligonucleotides for the combination of chemical and enzymatic RNA synthesis. Gene. 1992;112:101-5.
-
(1992)
Gene
, vol.112
, pp. 101-105
-
-
Pitulle, C.1
Kleineidam, R.G.2
Sproat, B.3
Krupp, G.4
-
11
-
-
0026680843
-
Site-specific modification of pre-mRNA: The 2'-hydroxyl groups at the splice sites
-
Moore MJ, Sharp PA. Site-specific modification of pre-mRNA: the 2'-hydroxyl groups at the splice sites. Science. 1992;256:992-7.
-
(1992)
Science
, vol.256
, pp. 992-997
-
-
Moore, M.J.1
Sharp, P.A.2
-
12
-
-
0034131335
-
Joining of RNAs by splinted ligation
-
Moore MJ, Query CC. Joining of RNAs by splinted ligation. Methods Enzymol. 2000;317:109-23.
-
(2000)
Methods Enzymol
, vol.317
, pp. 109-123
-
-
Moore, M.J.1
Query, C.C.2
-
13
-
-
12844274892
-
Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization
-
Smith GJ, et al. Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization. RNA. 2005;11:234-9.
-
(2005)
RNA
, vol.11
, pp. 234-239
-
-
Smith, G.J.1
-
14
-
-
0026687952
-
Fluorescence resonance energy transfer and nucleic acids
-
Clegg RM. Fluorescence resonance energy transfer and nucleic acids. Methods Enzymol. 1992;211:353-88.
-
(1992)
Methods Enzymol
, vol.211
, pp. 353-388
-
-
Clegg, R.M.1
-
16
-
-
0016502735
-
Distribution of end-to-end distances of oligopeptides in solution as estimated by energy transfer
-
Haas E, et al. Distribution of end-to-end distances of oligopeptides in solution as estimated by energy transfer. Proc Natl Acad Sci U S A. 1975;72:1807-11.
-
(1975)
Proc Natl Acad Sci U S A
, vol.72
, pp. 1807-1811
-
-
Haas, E.1
-
17
-
-
77954641162
-
Accurate single-molecule FRET studies using multiparameter fluorescence detection
-
Sisamakis E, et al. Accurate single-molecule FRET studies using multiparameter fluorescence detection. Methods Enzymol. 2010;475:455-514.
-
(2010)
Methods Enzymol
, vol.475
, pp. 455-514
-
-
Sisamakis, E.1
-
18
-
-
77957157863
-
Single-molecule FRET of protein-nucleic acid and protein-protein complexes: Surface passivation and immobilization
-
Lamichhane R, et al. Single-molecule FRET of protein-nucleic acid and protein-protein complexes: surface passivation and immobilization. Methods. 2010;52:192-200.
-
(2010)
Methods
, vol.52
, pp. 192-200
-
-
Lamichhane, R.1
-
19
-
-
0037461520
-
Fluorescent probes and bioconjugation chemistries for single-molecule fluorescence analysis of biomolecules
-
Kapanidis AN, Weiss S. Fluorescent probes and bioconjugation chemistries for single-molecule fluorescence analysis of biomolecules. J Chem Phys. 2002;117:10953-64.
-
(2002)
J Chem Phys
, vol.117
, pp. 10953-10964
-
-
Kapanidis, A.N.1
Weiss, S.2
-
20
-
-
33750295496
-
Nonblinking and long-lasting single-molecule fluorescence imaging
-
Rasnik I, McKinney SA, Ha T. Nonblinking and long-lasting single-molecule fluorescence imaging. Nat Methods. 2006;3:891-3.
-
(2006)
Nat Methods
, vol.3
, pp. 891-893
-
-
Rasnik, I.1
Mc Kinney, S.A.2
Ha, T.3
-
21
-
-
84862975911
-
Conformational changes of DEAD-box helicases monitored by single molecule fluorescence resonance energy transfer
-
Andreou AZ, Klostermeier D. Conformational changes of DEAD-box helicases monitored by single molecule fluorescence resonance energy transfer. Methods Enzymol. 2012;511:75-109.
-
(2012)
Methods Enzymol
, vol.511
, pp. 75-109
-
-
Andreou, A.Z.1
Klostermeier, D.2
-
22
-
-
38649106732
-
Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase
-
Theissen B, et al. Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase. Proc Natl Acad Sci U S A. 2008;105:548-53.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 548-553
-
-
Theissen, B.1
-
23
-
-
69449106505
-
The DNA gate of Bacillus subtilis gyrase is predominantly in the closed conformation during the DNA supercoiling reaction
-
Gubaev A, Hilbert M, Klostermeier D. The DNA gate of Bacillus subtilis gyrase is predominantly in the closed conformation during the DNA supercoiling reaction. Proc Natl Acad Sci U S A. 2009;106:13278-83.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 13278-13283
-
-
Gubaev, A.1
Hilbert, M.2
Klostermeier, D.3
-
24
-
-
22144492905
-
Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation
-
Lee NK, et al. Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation. Biophys J. 2005;88:2939-53.
-
(2005)
Biophys J
, vol.88
, pp. 2939-2953
-
-
Lee, N.K.1
-
25
-
-
33645765585
-
Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes
-
Margeat E, et al. Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes. Biophys J. 2006;90:1419-31.
-
(2006)
Biophys J
, vol.90
, pp. 1419-1431
-
-
Margeat, E.1
-
26
-
-
0033514435
-
Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism
-
Ha T, et al. Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism. Proc Natl Acad Sci U S A. 1999;96:893-8.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 893-898
-
-
Ha, T.1
-
27
-
-
33847682952
-
Correction of fluorescence spectra and measurement of fluorescence quantum efficiency
-
Parker CA, Rees WT. Correction of fluorescence spectra and measurement of fluorescence quantum efficiency. Analyst. 1960;85:587-600.
-
(1960)
Analyst
, vol.85
, pp. 587-600
-
-
Parker, C.A.1
Rees, W.T.2
-
28
-
-
0001433022
-
Fluorescence quantum yields and their relation to lifetimes of rhodamine 6G and fluorescein in nine solvents: Improved absolute standards for quantum yields
-
Magde D, Wong R, Seybold PG. Fluorescence quantum yields and their relation to lifetimes of rhodamine 6G and fluorescein in nine solvents: improved absolute standards for quantum yields. Photochem Photobiol. 2002;75:327-34.
-
(2002)
Photochem Photobiol
, vol.75
, pp. 327-334
-
-
Magde, D.1
Wong, R.2
Seybold, P.G.3
-
29
-
-
0018464261
-
The orientational freedom of molecular probes. The orientation factor in intramolecular energy transfer
-
Dale RE, Eisinger J, Blumberg WE. The orientational freedom of molecular probes. The orientation factor in intramolecular energy transfer. Biophys J. 1979;26:161-93.
-
(1979)
Biophys J
, vol.26
, pp. 161-193
-
-
Dale, R.E.1
Eisinger, J.2
Blumberg, W.E.3
-
30
-
-
0026640565
-
Orientation factor in steady-state and time-resolved resonance energy transfer measurements
-
Wu P, Brand L. Orientation factor in steady-state and time-resolved resonance energy transfer measurements. Biochemistry. 1992;31:7939-47.
-
(1992)
Biochemistry
, vol.31
, pp. 7939-7947
-
-
Wu, P.1
Brand, L.2
-
31
-
-
0036177565
-
Kappa-squared: From nuisance to new sense
-
van der Meer BW. Kappa-squared: from nuisance to new sense. J Biotechnol. 2002;82:181-96.
-
(2002)
J Biotechnol
, vol.82
, pp. 181-196
-
-
Van Der Meer, B.W.1
-
32
-
-
34250335726
-
Fretting about FRET: Correlation between kappa and R
-
VanBeek DB, et al. Fretting about FRET: correlation between kappa and R. Biophys J. 2007;92:4168-78.
-
(2007)
Biophys J
, vol.92
, pp. 4168-4178
-
-
Vanbeek, D.B.1
-
33
-
-
0018267881
-
Effect of the orientation of donor and acceptor on the probability of energy transfer involving electronic transitions of mixed polarization
-
Haas E, Katchalski-Katzir E, Steinberg IZ. Effect of the orientation of donor and acceptor on the probability of energy transfer involving electronic transitions of mixed polarization. Biochemistry. 1978;17:5064-70.
-
(1978)
Biochemistry
, vol.17
, pp. 5064-5070
-
-
Haas, E.1
Katchalski-Katzir, E.2
Steinberg, I.Z.3
-
34
-
-
14244270749
-
Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes
-
Parkhurst LJ, et al. Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes. Biopolymers. 2001;61:180-200.
-
(2001)
Biopolymers
, vol.61
, pp. 180-200
-
-
Parkhurst, L.J.1
-
35
-
-
0000823855
-
Determination of distance distribution from time domain fluorometry
-
Albaugh S, Steiner RF. Determination of distance distribution from time domain fluorometry. J Phys Chem. 1989;93:8013-16.
-
(1989)
J Phys Chem
, vol.93
, pp. 8013-8016
-
-
Albaugh, S.1
Steiner, R.F.2
-
36
-
-
0035909052
-
Tertiary structure stability of the hairpin rlbozyme In Its natural and minimal forms: Different energetic contributions from a ribose zipper motif
-
Klostermeier D, Millar DP. Tertiary structure stability of the hairpin rlbozyme In Its natural and minimal forms: different energetic contributions from a ribose zipper motif. Biochemistry. 2001;40:11211-18.
-
(2001)
Biochemistry
, vol.40
, pp. 11211-11218
-
-
Klostermeier, D.1
Millar, D.P.2
-
37
-
-
2442519939
-
Time-resolved fluorescence resonance energy transfer: A versatile tool for the analysis of nucleic acids
-
Klostermeier D, Millar DP. Time-resolved fluorescence resonance energy transfer: a versatile tool for the analysis of nucleic acids. Biopolymers. 2001;61:159-79.
-
(2001)
Biopolymers
, vol.61
, pp. 159-179
-
-
Klostermeier, D.1
Millar, D.P.2
-
38
-
-
34548096938
-
Theory of photon statistics in single-molecule Forster resonance energy transfer
-
Gopich I, Szabo A. Theory of photon statistics in single-molecule Forster resonance energy transfer. J Chem Phys. 2005;122:14707.
-
(2005)
J Chem Phys
, vol.122
, pp. 14707
-
-
Gopich, I.1
Szabo, A.2
-
39
-
-
33646377416
-
Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis
-
Antonik M, et al. Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis. J Phys Chem B. 2006;110:6970-8.
-
(2006)
J Phys Chem B
, vol.110
, pp. 6970-6978
-
-
Antonik, M.1
-
40
-
-
33751349660
-
Shot-noise limited single-molecule FRET histograms: Comparison between theory and experiments
-
Nir E, et al. Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments. J Phys Chem B. 2006;110:22103-24.
-
(2006)
J Phys Chem B
, vol.110
, pp. 22103-22124
-
-
Nir, E.1
-
41
-
-
0028672799
-
Maximum entropy method of data analysis in time-resolved spectroscopy
-
Brochon JC. Maximum entropy method of data analysis in time-resolved spectroscopy. Methods Enzymol. 1994;240:262-311.
-
(1994)
Methods Enzymol
, vol.240
, pp. 262-311
-
-
Brochon, J.C.1
-
42
-
-
79851509342
-
Three-dimensional molecular modeling with single molecule FRET
-
Brunger AT, et al. Three-dimensional molecular modeling with single molecule FRET. J Struct Biol. 2010;173:497-505.
-
(2010)
J Struct Biol
, vol.173
, pp. 497-505
-
-
Brunger, A.T.1
-
43
-
-
56149121056
-
A nano-positioning system for macromolecular structural analysis
-
Muschielok A, et al. A nano-positioning system for macromolecular structural analysis. Nat Methods. 2008;5:965-71.
-
(2008)
Nat Methods
, vol.5
, pp. 965-971
-
-
Muschielok, A.1
-
44
-
-
57449089390
-
Single-molecule FRET measures bends and kinks in DNA
-
Wozniak AK, et al. Single-molecule FRET measures bends and kinks in DNA. Proc Natl Acad Sci U S A. 2008;105:18337-42.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 18337-18342
-
-
Wozniak, A.K.1
-
45
-
-
79952255056
-
Accurate distance determination of nucleic acids via Forster resonance energy transfer: Implications of dye linker length and rigidity
-
Sindbert S, et al. Accurate distance determination of nucleic acids via Forster resonance energy transfer: implications of dye linker length and rigidity. J Am Chem Soc., 2011;133:2463-80.
-
(2011)
J am Chem Soc.
, vol.133
, pp. 2463-2480
-
-
Sindbert, S.1
-
46
-
-
0032439514
-
Folding of branched RNA species
-
Lilley DM. Folding of branched RNA species. Biopolymers. 1998;48:101-12.
-
(1998)
Biopolymers
, vol.48
, pp. 101-112
-
-
Lilley, D.M.1
-
47
-
-
0023498897
-
Self-cleavage of RNA in the replication of viroids and virusoids
-
Symons RH, et al. Self-cleavage of RNA in the replication of viroids and virusoids. J Cell Sci Suppl. 1987;7:303-18.
-
(1987)
J Cell Sci Suppl
, vol.7
, pp. 303-318
-
-
Symons, R.H.1
-
48
-
-
0023663396
-
Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites
-
Forster AC, Symons RH. Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites. Cell. 1987;49:211-20.
-
(1987)
Cell
, vol.49
, pp. 211-220
-
-
Forster, A.C.1
Symons, R.H.2
-
49
-
-
0027973506
-
A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements [erratum appears in Science. 1995;267:1581]
-
Tuschl T, et al. A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements [erratum appears in Science. 1995;267:1581]. Science. 1994;266:785-9.
-
(1994)
Science
, vol.266
, pp. 785-789
-
-
Tuschl, T.1
-
50
-
-
0029073091
-
The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
-
Scott WG, Finch JT, Klug A. The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell. 1995;81:991-1002.
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
51
-
-
0031463467
-
Ion-induced folding ofthe hammerhead ribozyme: A fluorescence resonance energy transfer study
-
Bassi GS, et al. Ion-induced folding ofthe hammerhead ribozyme: a fluorescence resonance energy transfer study. EMBO J. 1997;16:7481-9.
-
(1997)
EMBO J
, vol.16
, pp. 7481-7489
-
-
Bassi, G.S.1
-
52
-
-
0023055382
-
Nucleotide sequence and newly formed phosphodiester bond of spontaneously ligated satellite tobacco ringspot virus RNA
-
Buzayan JM, Hampel A, Bruening G. Nucleotide sequence and newly formed phosphodiester bond of spontaneously ligated satellite tobacco ringspot virus RNA. Nucleic Acids Res. 1986;14:9729-43.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 9729-9743
-
-
Buzayan, J.M.1
Hampel, A.2
Bruening, G.3
-
53
-
-
0028848490
-
Catalytic properties of hairpin ribozymes derived from chicory yellow mottle virus and arabis mosaic virus satellite RNAs
-
DeYoung M, et al. Catalytic properties of hairpin ribozymes derived from chicory yellow mottle virus and arabis mosaic virus satellite RNAs. Biochemistry. 1995;34:15785-91.
-
(1995)
Biochemistry
, vol.34
, pp. 15785-15791
-
-
Deyoung, M.1
-
54
-
-
0034708334
-
Structure and function of the hairpin ribozyme
-
Fedor MJ. Structure and function of the hairpin ribozyme. J Mol Biol. 2000;297:269-91.
-
(2000)
J Mol Biol
, vol.297
, pp. 269-291
-
-
Fedor, M.J.1
-
55
-
-
0032535607
-
Folding of the four-way RNA junction of the hairpin ribozyme
-
Walter F, Murchie AIH, Lilley DMJ. Folding of the four-way RNA junction of the hairpin ribozyme. Biochemistry. 1998;37:17629-36.
-
(1998)
Biochemistry
, vol.37
, pp. 17629-17636
-
-
Walter, F.1
Murchie, A.2
Lilley, D.M.J.3
-
56
-
-
0032061318
-
Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops
-
Murchie AI, et al. Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops. Mol Cell. 1998;1:873-81.
-
(1998)
Mol Cell
, vol.1
, pp. 873-881
-
-
Murchie, A.I.1
-
57
-
-
0032491204
-
Structure and activity of the hairpin ribozyme in its natural junction conformation: Effect of metal ions
-
Walter F, et al. Structure and activity of the hairpin ribozyme in its natural junction conformation: effect of metal ions. Biochemistry. 1998;37:14195-203.
-
(1998)
Biochemistry
, vol.37
, pp. 14195-14203
-
-
Walter, F.1
-
58
-
-
0035848837
-
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis [see comments]
-
Rupert PB, Ferre-D'Amare AR. Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis [see comments]. Nature. 2001;410:780-6.
-
(2001)
Nature
, vol.410
, pp. 780-786
-
-
Rupert, P.B.1
Ferre-D’amare, A.R.2
-
59
-
-
0034545071
-
The folding of the hairpin ribozyme: Dependence on the loops and the junction
-
Zhao ZY, et al. The folding of the hairpin ribozyme: dependence on the loops and the junction. RNA. 2000;6:1833-46.
-
(2000)
RNA
, vol.6
, pp. 1833-1846
-
-
Zhao, Z.Y.1
-
60
-
-
36949051443
-
Assembly mapping of 30S ribosomal proteins from E. Coli
-
Mizushima S, Nomura M. Assembly mapping of 30S ribosomal proteins from E. coli. Nature. 1970;226:1214-18.
-
(1970)
Nature
, vol.226
, pp. 1214-1218
-
-
Mizushima, S.1
Nomura, M.2
-
61
-
-
0032559410
-
Protein and Mg2+-induced conformational changes in the S15 binding site of 16 S ribosomal RNA
-
2+-induced conformational changes in the S15 binding site of 16 S ribosomal RNA. J Mol Biol. 1998;275:453-64.
-
(1998)
J Mol Biol
, vol.275
, pp. 453-464
-
-
Orr, J.W.1
Hagerman, P.J.2
Williamson, J.R.3
-
62
-
-
0037006790
-
Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules
-
Kim HD, et al. Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. Proc Natl Acad Sci U S A. 2002;99:4284-9.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 4284-4289
-
-
Kim, H.D.1
-
63
-
-
2542601493
-
A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly
-
Klostermeier D, et al. A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly. Nucleic Acids Res. 2004;32:2707-15.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2707-2715
-
-
Klostermeier, D.1
-
64
-
-
0033529972
-
Ligand-induced conformational changes observed in single RNA molecules
-
Ha T, et al. Ligand-induced conformational changes observed in single RNA molecules. Proc Natl Acad Sci U S A. 1999;96:9077-82.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 9077-9082
-
-
Ha, T.1
-
65
-
-
0037123763
-
Views of transcription initiation
-
Young BA, Gruber TM, Gross CA. Views of transcription initiation. Cell. 2002;109:417-20.
-
(2002)
Cell
, vol.109
, pp. 417-420
-
-
Young, B.A.1
Gruber, T.M.2
Gross, C.A.3
-
67
-
-
0035943446
-
Translocation of sigma(70) with RNA polymerase during transcription: Fluorescence resonance energy transfer assay for movement relative to DNA
-
Mukhopadhyay J, et al. Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA. Cell. 2001;106:453-63.
-
(2001)
Cell
, vol.106
, pp. 453-463
-
-
Mukhopadhyay, J.1
-
68
-
-
27644579628
-
Retention of transcription initiation factor sigma70 in transcription elongation: Single-molecule analysis
-
Kapanidis AN, et al. Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis. Mol Cell. 2005;20:347-56.
-
(2005)
Mol Cell
, vol.20
, pp. 347-356
-
-
Kapanidis, A.N.1
-
69
-
-
18344371347
-
Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex
-
Mekler V, et al. Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex. Cell. 2002;108:599-614.
-
(2002)
Cell
, vol.108
, pp. 599-614
-
-
Mekler, V.1
-
70
-
-
0033578701
-
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution
-
Zhang G, et al. Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution. Cell. 1999;98:811-24.
-
(1999)
Cell
, vol.98
, pp. 811-824
-
-
Zhang, G.1
-
71
-
-
0030271890
-
Crystal structure of a sigma 70 subunit fragment from E. Coli RNA polymerase
-
Malhotra A, Severinova E, Darst SA. Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase. Cell. 1996;87:127-36.
-
(1996)
Cell
, vol.87
, pp. 127-136
-
-
Malhotra, A.1
Severinova, E.2
Darst, S.A.3
-
72
-
-
0035222927
-
Site-specific protein-DNA photocrosslinking. Analysis of bacterial transcription initiation complexes
-
Naryshkin N, et al. Site-specific protein-DNA photocrosslinking. Analysis of bacterial transcription initiation complexes. Methods Mol Biol. 2001;148:337-61.
-
(2001)
Methods Mol Biol
, vol.148
, pp. 337-361
-
-
Naryshkin, N.1
-
73
-
-
0032979707
-
Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction
-
Walter NG, Burke JM, Millar DP. Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction. Nat Struct Biol. 1999;6:544-9.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 544-549
-
-
Walter, N.G.1
Burke, J.M.2
Millar, D.P.3
-
74
-
-
0034711046
-
Helical junctions as determinants for RNA folding: Origin of tertiary structure stability of the hairpin ribozyme
-
Klostermeier D, Millar DP. Helical junctions as determinants for RNA folding: origin of tertiary structure stability of the hairpin ribozyme. Biochemistry. 2000;39:12970-8.
-
(2000)
Biochemistry
, vol.39
, pp. 12970-12978
-
-
Klostermeier, D.1
Millar, D.P.2
-
75
-
-
0037016023
-
Energetics of hydrogen bond networks in RNA: Hydrogen bonds surrounding G+1 and U42 are the major determinants for tertiary structure stability of the hairpin ribozyme
-
Klostermeier D, Millar DP. Energetics of hydrogen bond networks in RNA: hydrogen bonds surrounding G+1 and U42 are the major determinants for tertiary structure stability of the hairpin ribozyme. Biochemistry. 2002;41:14095-102.
-
(2002)
Biochemistry
, vol.41
, pp. 14095-14102
-
-
Klostermeier, D.1
Millar, D.P.2
-
76
-
-
23744470902
-
Single-molecule RNA folding
-
Bokinsky G, Zhuang X. Single-molecule RNA folding. Acc Chem Res. 2005;38:566-73.
-
(2005)
Acc Chem Res
, vol.38
, pp. 566-573
-
-
Bokinsky, G.1
Zhuang, X.2
-
77
-
-
0042925420
-
Single-molecule transition-state analysis of RNA folding
-
Bokinsky G, et al. Single-molecule transition-state analysis of RNA folding. Proc Natl Acad Sci U S A. 2003;100:9302-7.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9302-9307
-
-
Bokinsky, G.1
-
78
-
-
0025367254
-
Self-splicing of group I introns
-
Cech TR. Self-splicing of group I introns. Annu Rev Biochem. 1990;59:543-68.
-
(1990)
Annu Rev Biochem
, vol.59
, pp. 543-568
-
-
Cech, T.R.1
-
80
-
-
29244449617
-
An obligate intermediate along the slow folding pathway of a group II intron ribozyme
-
Su LJ, Waldsich C, Pyle AM. An obligate intermediate along the slow folding pathway of a group II intron ribozyme. Nucleic Acids Res. 2005;33:6674-87.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6674-6687
-
-
Su, L.J.1
Waldsich, C.2
Pyle, A.M.3
-
81
-
-
52949084315
-
Single-molecule studies of group II intron ribozymes
-
Steiner M, et al. Single-molecule studies of group II intron ribozymes. Proc Natl Acad Sci U S A. 2008;105:13853-88.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 13853-13888
-
-
Steiner, M.1
-
82
-
-
33845738802
-
Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity
-
Halls C, et al. Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity. J Mol Biol. 2007;365:835-55.
-
(2007)
J Mol Biol
, vol.365
, pp. 835-855
-
-
Halls, C.1
-
83
-
-
70350089113
-
The mechanism of ATP-dependent RNA unwinding by DEAD box proteins
-
Hilbert M, Karow AR, Klostermeier D. The mechanism of ATP-dependent RNA unwinding by DEAD box proteins. Biol Chem. 2009;390:1237-50.
-
(2009)
Biol Chem
, vol.390
, pp. 1237-1250
-
-
Hilbert, M.1
Karow, A.R.2
Klostermeier, D.3
-
84
-
-
78049234242
-
Single-molecule analysis of Mss116-mediated group II intron folding
-
Karunatilaka KS, et al. Single-molecule analysis of Mss116-mediated group II intron folding. Nature. 2010;467:935-9.
-
(2010)
Nature
, vol.467
, pp. 935-939
-
-
Karunatilaka, K.S.1
-
85
-
-
23744455796
-
Alternating-laser excitation of single molecules
-
Kapanidis AN, et al. Alternating-laser excitation of single molecules. Acc Chem Res. 2005;38:523-33.
-
(2005)
Acc Chem Res
, vol.38
, pp. 523-533
-
-
Kapanidis, A.N.1
-
86
-
-
33751212468
-
Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism
-
Kapanidis AN, et al. Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism. Science. 2006;314:1144-7.
-
(2006)
Science
, vol.314
, pp. 1144-1147
-
-
Kapanidis, A.N.1
-
87
-
-
77956926253
-
A structural model for the DEAD box helicase YxiN in solution: Localization of the RNA-binding domain
-
Karow AR, Klostermeier D. A structural model for the DEAD box helicase YxiN in solution: localization of the RNA-binding domain. J Mol Biol. 2010;402:629-37.
-
(2010)
J Mol Biol
, vol.402
, pp. 629-637
-
-
Klostermeier, A.R.D.1
-
88
-
-
77956715760
-
Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif
-
Hardin JW, Hu YX, McKay DB. Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif. J Mol Biol. 2010;402:412-27.
-
(2010)
J Mol Biol
, vol.402
, pp. 412-427
-
-
Hardin, J.W.1
Hu, Y.X.2
Mc Kay, D.B.3
-
89
-
-
38349173560
-
Single-molecule tracking of mRNA exiting from RNA polymerase II
-
Andrecka J, et al. Single-molecule tracking of mRNA exiting from RNA polymerase II. Proc Natl Acad Sci U S A. 2007;105:135-40.
-
(2007)
Proc Natl Acad Sci U S A
, vol.105
, pp. 135-140
-
-
Andrecka, J.1
-
90
-
-
73049092277
-
Nano positioningsystem reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex
-
Andrecka J, et al. Nano positioningsystem reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex. Nucleic Acids Res. 2009;37:5803-9.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5803-5809
-
-
Andrecka, J.1
-
91
-
-
84860334486
-
Dynamic architecture of a minimal RNA polymerase II open promoter complex
-
Treutlein B, et al. Dynamic architecture of a minimal RNA polymerase II open promoter complex. Mol Cell. 2012;46:136-46.
-
(2012)
Mol Cell
, vol.46
, pp. 136-146
-
-
Treutlein, B.1
-
92
-
-
4143071283
-
Single-molecule three-color FRET
-
Hohng S, Joo C, Ha T. Single-molecule three-color FRET. Biophys J. 2004;87:1328-37.
-
(2004)
Biophys J
, vol.87
, pp. 1328-1337
-
-
Joo Ha, S.C.T.1
-
93
-
-
0041810129
-
Triple FRET: A tool for studying long-range molecular interactions
-
Haustein E, Jahnz M, Schwille P. Triple FRET: a tool for studying long-range molecular interactions. ChemPhysChem. 2003;4:745-8.
-
(2003)
Chemphyschem
, vol.4
, pp. 745-748
-
-
Jahnz Schwille, E.M.P.1
-
94
-
-
78650272919
-
Single-molecule four-color FRET
-
Lee J, et al. Single-molecule four-color FRET. Angew Chem Int Ed Engl. 2010;49:9922-5.
-
(2010)
Angew Chem Int Ed Engl
, vol.49
, pp. 9922-9925
-
-
Lee, J.1
-
95
-
-
77957689889
-
Monitoring multiple distances within a single molecule usingswitchable FRET
-
Uphoff S, et al. Monitoring multiple distances within a single molecule usingswitchable FRET. Nat Methods. 2010;7:831-6.
-
(2010)
Nat Methods
, vol.7
, pp. 831-836
-
-
Uphoff, S.1
-
96
-
-
2942650138
-
Fluorescence-aided molecule sorting: Analysis of structure and interactions by alternating-laser excitation of single molecules
-
Kapanidis AN, et al. Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules. Proc Natl Acad Sci U S A. 2004;101:8936-41.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 8936-8941
-
-
Kapanidis, A.N.1
-
97
-
-
0037474152
-
Zero-mode waveguides for single-molecule analysis at high concentrations
-
Levene MJ, et al. Zero-mode waveguides for single-molecule analysis at high concentrations. Science. 2003;299:682-6.
-
(2003)
Science
, vol.299
, pp. 682-686
-
-
Levene, M.J.1
-
98
-
-
79551680953
-
Dynamics of the translational machinery
-
Petrov A, et al. Dynamics of the translational machinery. Curr Opin Struct Biol. 2011;21:137-45.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 137-145
-
-
Petrov, A.1
-
99
-
-
84857698151
-
Manipulating protein conformations by single-molecule AFM-FRET nanoscopy
-
He Y et al. Manipulating protein conformations by single-molecule AFM-FRET nanoscopy. ACS Nano. 2012;6:1221-9.
-
(2012)
ACS Nano
, vol.6
, pp. 1221-1229
-
-
He, Y.1
-
100
-
-
79953292607
-
Ultrahigh-resolution optical trap with single-fluorophore sensitivity
-
Comstock MJ, Ha T, Chemla YR. Ultrahigh-resolution optical trap with single-fluorophore sensitivity. Nat Methods. 2011;8:335-40.
-
(2011)
Nat Methods
, vol.8
, pp. 335-340
-
-
Comstock, M.J.1
Ha, T.2
Chemla, Y.R.3
-
101
-
-
77954580825
-
Force-fluorescence spectroscopy at the single-molecule level
-
Zhou R, Schlierf M, Ha T. Force-fluorescence spectroscopy at the single-molecule level. Methods Enzymol. 2010;475:405-26.
-
(2010)
Methods Enzymol
, vol.475
, pp. 405-426
-
-
Schlierf Ha, R.M.T.1
-
102
-
-
35348897239
-
Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the Holliday junction
-
Hohng S, et al. Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the Holliday junction. Science. 2007;318:279-83.
-
(2007)
Science
, vol.318
, pp. 279-283
-
-
Hohng, S.1
-
103
-
-
23144441755
-
Biocompatible force sensor with optical readout and dimensions of 6 nm3
-
3. Nano Lett. 2005;5:1509-14.
-
(2005)
Nano Lett
, vol.5
, pp. 1509-1514
-
-
Shroff, H.1
|