Structure and activity of the hairpin ribozyme in its natural junction conformation: Effect of metal ions

Biochemistry

Volumn 37, Issue 40, 1998, Pages 14195-14203

  Walter, Frank ^a   Murchie, Alastair I H ^a   Thomson, James B ^a   Lilley, David M J ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOZYME;

ANIMAL CELL; ARTICLE; COVALENT BOND; CROSS LINKING; ENERGY TRANSFER; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME CONFORMATION; ENZYME STRUCTURE; ESTERIFICATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE;

BASE SEQUENCE; CADMIUM; CALCIUM; CATIONS, DIVALENT; CATIONS, MONOVALENT; COBALT; ENERGY TRANSFER; ENZYME ACTIVATION; MANGANESE; METALS; MOLECULAR SEQUENCE DATA; NEPOVIRUS; NUCLEIC ACID CONFORMATION; RNA, CATALYTIC; SODIUM; SPECTROMETRY, FLUORESCENCE; STRONTIUM; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 0032491204     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi981513+     Document Type: Article

References (45)

1. Eckstein, F., and Lilley, D. M. J., Eds. (1996) RNA Catalysis, Nucleic Acids and Molecular Biology, Vol. 10, Springer-Verlag, Berlin.
2. Buzayan, J. M., Gerlach, W. L., and Bruening. G. (1986) Nature 323, 349-353.
3. Feldstein, P. A., Buzayan, J. M., and Bruening, G. (1989) Gene 82, 53-61.
4. Hampel, A., and Tritz, R. (1989) Biochemistry 28, 4929-4933.
5. DeYoung, M. B., Siwkowski, A. M., Lian, Y., and Hampel, A. (1995) Biochemistry 34, 15785-15791.
6. van Tol, H., Buzayan, J. M., and Bruening, G. (1991) J. Virol. 280, 23-30.
7. Hegg, L. A., and Fedor, M. J. (1995) Biochemistry 34, 15813-15828.
8. Hampel, A., Tritz, R., Hicks, M., and Cruz, P. (1990) Nucleic Acids Res. 18, 299-304.
9. Chowrira, B. M., Berzal-Herranz, A., and Burke, J. M. (1991) Nature 354, 320-322.
10. Berzal-Herranz, A., Simpson, J., Chowrira, B. M., Butcher, S. E., and Burke, J. M. (1993) EMBO. J. 12, 2567-2574.
11. Anderson, P., Monforte, J., Tritz, R., Nesbitt, S., Hearst, J., and Hampel, A. (1994) Nucleic Acids Res. 22, 1096-1100.
12. Siwkowski, A., Shippy, R., and Hampel, A. (1997) Biochemistry 36, 3930-3940.
13. Chowrira, B. M., Berzal-Herranz, A., Keller, C. F., and Burke, J. M. (1993) J. Biol. Chem. 268, 19458-19462.
14. Grasby, J. A., Mersmann, K., Singh, M., and Gait, M. J. (1995) Biochemistry 34, 4068-4076.
15. Schmidt, S., Beigelman, L., Karpeisky, A., Usman, N., Sorensen, U. S., and Gait, M. J. (1996) Nucleic Acids Res. 24, 573-581.
16. Komatsu, Y., Koizumi, M., Nakamura, H., and Ohtsuka, E. (1994) J. Am. Chem. Soc. 116, 3692-3696.
17. Butcher, S. E., Heckman, J. E., and Burke, J. M. (1995) J. Biol. Chem. 270, 29648-29651.
18. Komatsu, Y., Kanzaki, I., and Ohtsuka, E. (1996) Biochemistry 35, 9815-9820.
19. Komatsu, Y., Kanzaki, I., Shirai, M., and Ohtsuka, E. (1997) Biochemistry 36, 9935-9940.
20. Komatsu, Y., Shirai, M., Yamashita, S., and Ohtsuka, E. (1997) Bioorg. Med. Chem. 5, 1063-1069.
21. Earnshaw, D. J., Masquida, B., Müller, S., Sigurdsson, S. T., Eckstein, F., Westhof, E., and Gait, M. J. (1997) J Mol. Biol. 274, 197-212.
22. Shin, C., Choi, J. N., Sang, S. I., Song, J. T., Ahn, J. H., Lee, J. S., and Choi, Y. D. (1996) Nucleic Acids Res. 24, 2685-2689.
23. Murchie, A. I. H., Thomson, J. B., Walter, F., and Lilley, D. M. J. (1998) Mol. Cell 1, 873-881.
24. Walter, N. G., Hampel, K. J., Brown, K. M., and Burke, J. M. (1998) EMBO J. 17, 2378-2391.
25. Lilley, D. M. J., Clegg, R. M., Diekmann, S., Seeman, N. C., von Kitzing, E., and Hagerman, P. (1995) Eur. J. Biochem. 230, 1-2.
26. Duckett, D. R., Murchie, A. I. H., and Lilley, D. M. J. (1995) Cell 83, 1027-1036.
27. Walter, F., Murchie, A. I. H., Duckett, D. R., and Lilley, D. M. J. (1998) RNA 4, 719-728.
28. Duckett, D. R., Murchie, A. I. H., and Lilley, D. M. J. (1990) EMBO J. 9, 583-590.
29. Møllegaard, N. E., Murchie, A. I. H., Lilley, D. M. J., and Nielsen, P. E. (1994) EMBO J. 13, 1508-1513.
30. Förster, T. (1948) Ann. Phys. 2, 55-75.
31. Murchie, A. I. H., Clegg, R. M., von Kitzing, E., Duckett, D. R., Diekmann, S., and Lilley, D. M. J. (1989) Nature 341, 763-766.
32. Clegg, R. M., Murchie, A. I. H., Zechel, A., Carlberg, C., Diekmann, S., and Lilley, D. M. J. (1992) Biochemistry 31, 4846-4856.
33. Clegg, R. M., Murchie, A. I. H., Zechel, A., and Lilley, D. M. J. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 2994-2998.
34. Clegg, R. M. (1992) Methods Enzymol. 211, 353-388.
35. Hampel, A., and Cowan, J. A. (1997) Chem. Biol. 4, 513-517.
36. Nesbitt, S., Hegg, L. A., and Fedor, M. J. (1997) Chem. Biol. 4, 619-630.
37. Young, K. J., Gill, F., and Grasby, J. A. (1997) Nucleic Acids Res. 25, 3760-3766.
38. Chowrira, B. M., Berzal-Herranz, A., and Burke, J. M. (1993) Biochemistry 32, 1088-1095.
39. Gessner, R. V., Quigley, G. J., Wang, A. H.-J., van der Marel, G., van Boom, J., and Rich, A. (1985) Biochemistry 24, 237-240.
40. Beaucage, S. L., and Caruthers, M. H. (1981) Tetrahedron Lett. 22, 1859-1862.
41. Bassi, G. S., Murchie, A. I. H., Walter, F., Clegg, R. M., and Lilley, D. M. J. (1997) EMBO J. 16, 7481-7489.
42. Hakimelahi, G. H., Proba, Z. A., and Ogilvie, K. K. (1981) Tetrahedron Lett. 22, 5243-5246.
43. Perreault, J.-P., Wu, T., Cousineau, B., Ogilvie, K. K., and Cedergren, R. (1990) Nature 344, 565-567.
44. Milligan, J. F., Groebe, D. R., Witherall, G. W., and Uhlenbeck, O. C. (1987) Nucleic Acids Res. 15, 8783-8798.
45. Thomson, J. B., Sigurdsson, S. T., Zeuch, A., and Eckstein, F. (1996) Nucleic Acids Res. 24, 4401-4406.