Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase

Proceedings of the National Academy of Sciences of the United States of America

Volumn 105, Issue 2, 2008, Pages 548-553

  Theissen, Bettina ^a   Karow, Anne R ^a   Köhler, Jürgen ^b   Gubaev, Airat ^a   Klostermeier, Dagmar ^a  

^a UNIVERSITY OF BASEL   (Switzerland)

^b UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

ATP induced conformational changes; Cooperativity; RNA unwinding; Single molecule FRET; YxiN

Indexed keywords

ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATE; DEAD BOX PROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; BACILLUS SUBTILIS; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; CRYSTAL STRUCTURE; ENERGY CONVERSION; FLUORESCENCE RESONANCE ENERGY TRANSFER; HYDROLYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; RNA BINDING;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; CLONING, MOLECULAR; CRYSTALLOGRAPHY, X-RAY; CYSTEINE; DEAD-BOX RNA HELICASES; FLUORESCENCE RESONANCE ENERGY TRANSFER; HYDROLYSIS; KINETICS; LIGANDS; MOLECULAR CONFORMATION; NUCLEIC ACID DENATURATION; PROTEIN BINDING; PROTEIN CONFORMATION; RNA;

BACILLUS SUBTILIS;

EID: 38649106732     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0705488105     Document Type: Article

References (36)

1. Cordin O, Banroques J, Tanner NK, Linder P (2006) Gene 367:17-37.
2. Rogers GW, Jr, Richter NJ, Merrick WC (1999) J Biol Chem 274:12236-12244.
3. Yang Q, Jankowsky E (2006) Nat Struct Mol Biol 13:981-986.
4. Rudolph MG, Heissmann R, Wittmann JG, Klostermeier D (2006) J Mol Biol 361:731-743.
5. Caruthers JM, Hu Y, McKay DB (2006) Acta Crystallogr F 62:1191-1195.
6. Kurimoto K, Muto Y, Obayashi N, Terada T, Shirouzu M, Yabuki T, Aoki M, Seki E, Matsuda T, Kigawa T, et al. (2005) J Struct Biol 150:58-68.
7. Caruthers JM, Johnson ER, McKay DB (2000) Proc Natl Acad Sci USA 97:13080-13085.
8. Benz J, Trachsel H, Baumann U (1999) Structure (London) 7:671-679.
9. Johnson ER, McKay DB (1999) RNA 5:1526-1534.
10. Story RM, Li H, Abelson JN (2001) Proc Natl Acad Sci USA 98:1465-1470.
11. Shi H, Cordin O, Minder CM, Linder P, Xu RM (2004) Proc Natl Acad Sci USA 101:17628-17633.
12. Cheng Z, Coller J, Parker R, Song H (2005) RNA 11:1258-1270.
13. Sengoku T, Nureki O, Nakamura A, Kobayashi S, Yokoyama S (2006) Cell 125:287-300.
14. Andersen CB, Ballut L, Johansen JS, Chamieh H, Nielsen KH, Oliveira CL, Pedersen JS, Seraphin B, Le Hir H, Andersen GR (2006) Science 313:1968-1972.
15. Bono F, Ebert J, Lorentzen E, Conti E (2006) Cell 126:713-725.
16. Lorsch JR, Herschlag D (1998) Biochemistry 37:2180-2193.
17. Lorsch JR, Herschlag D (1998) Biochemistry 37:2194-2206.
18. Polach KJ, Uhlenbeck OC (2002) Biochemistry 41:3693-3702.
19. Kossen K, Uhlenbeck OC (1999) Nucleic Acids Res 27:3811-3820.
20. Kossen K, Karginov FV, Uhlenbeck OC (2002) J Mol Biol 324:625-636.
21. Wang S, Hu Y, Overgaard MT, Karginov FV, Uhlenbeck OC, McKay DB (2006) RNA.
22. Ellman GL (1959) Arch Biochem Biophys 82:70-77.
23. Combet C, Jambon M, Deleage G, Geourjon C (2002) Bioinformatics 18:213-214.
24. Karow AR, Theissen B, Klostermeier D (2007) FEBS J 274:463-473.
25. Talavera MA, Matthews EE, Eliason WK, Sagi I, Wang J, Henn, A., De La Cruz EM (2006) J Mol Biol 355:697-707.
26. Henn A, Shi SP, Zarivach R, Ben-Zeev E, Sagi I (2002) J Biol Chem 277:46559-46565.
27. Karginov FV, Uhlenbeck OC (2004) Nucleic Acids Res 32:3028-3032.
28. Fairman ME, Maroney PA, Wang W, Bowers HA, Gollnick P, Nilsen TW, Jankowsky E (2004) Science 304:730-734.
29. Rogers GW, Jr, Lima WF, Merrick WC (2001) J Biol Chem 276:12598-12608.
30. Tsu CA, Uhlenbeck OC (1998) Biochemistry 37:16989-16996.
31. Iost I, Dreyfus M, Linder P (1999) J Biol Chem 274:17677-17683.
32. Talavera MA, De La Cruz EM (2005) Biochemistry 44:959-970.
33. Adam H (1962) in Methoden der Enzymatischen Analyse (Bergmeyer, Weinheim, Germany), pp 573-577.
34. Parker CA, Rees WT (1960) Analyst 85:587-600.
35. Magde D, Wong R, Seybold PG (2002) Photochem Photobiol 75:327-334.
36. Förster T (1959) Disc Faraday Soc 27:7-17.