-
1
-
-
84862643958
-
Genetic evidence for bacterial chemolithoautotrophy based on the reductive tricarboxylic acid cycle in groundwater systems
-
Alfreider, A., and Vogt, C. (2012) Genetic evidence for bacterial chemolithoautotrophy based on the reductive tricarboxylic acid cycle in groundwater systems. Microbes Environ 27: 209–214.
-
(2012)
Microbes Environ
, vol.27
, pp. 209-214
-
-
Alfreider, A.1
Vogt, C.2
-
2
-
-
84957584565
-
Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum
-
Anantharaman, K., Brown, C.T., Burstein, D., Castelle, C.J., Probst, A.J., Thomas, B.C., et al. (2016) Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum. PeerJ 4: e1607.
-
(2016)
PeerJ
, vol.4
-
-
Anantharaman, K.1
Brown, C.T.2
Burstein, D.3
Castelle, C.J.4
Probst, A.J.5
Thomas, B.C.6
-
4
-
-
11144273503
-
Geology of the Crystal Geyser and environmental implications of its effluent, Grand County, Utah
-
Baer, J.L., and Rigby, J.K. (1978) Geology of the Crystal Geyser and environmental implications of its effluent, Grand County, Utah. Utah Geol 5: 125–130.
-
(1978)
Utah Geol
, vol.5
, pp. 125-130
-
-
Baer, J.L.1
Rigby, J.K.2
-
5
-
-
33845898858
-
Lineages of acidophilic archaea revealed by community genomic analysis
-
Baker, B.J., Tyson, G.W., Webb, R.I., Flanagan, J., Hugenholtz, P., Allen, E.E., and Banfield, J.F. (2006) Lineages of acidophilic archaea revealed by community genomic analysis. Science 314: 1933–1935.
-
(2006)
Science
, vol.314
, pp. 1933-1935
-
-
Baker, B.J.1
Tyson, G.W.2
Webb, R.I.3
Flanagan, J.4
Hugenholtz, P.5
Allen, E.E.6
Banfield, J.F.7
-
7
-
-
77952888917
-
Autotrophic carbon fixation in archaea
-
Berg, I.A., Kockelkorn, D., Ramos-Vera, W.H., Say, R.F., Zarzycki, J., Hügler, M., et al. (2010) Autotrophic carbon fixation in archaea. Nat Rev Microbiol 8: 447–460.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 447-460
-
-
Berg, I.A.1
Kockelkorn, D.2
Ramos-Vera, W.H.3
Say, R.F.4
Zarzycki, J.5
Hügler, M.6
-
8
-
-
71249141574
-
Geological carbon storage
-
Bickle, M.J. (2009) Geological carbon storage. Nat Geosci 2: 815–818.
-
(2009)
Nat Geosci
, vol.2
, pp. 815-818
-
-
Bickle, M.J.1
-
9
-
-
84936942726
-
Unusual biology across a group comprising more than 15% of domain Bacteria
-
Brown, C.T., Hug, L.A., Thomas, B.C., Sharon, I., Castelle, C.J., Singh, A., et al. (2015) Unusual biology across a group comprising more than 15% of domain Bacteria. Nature 523: 208–211.
-
(2015)
Nature
, vol.523
, pp. 208-211
-
-
Brown, C.T.1
Hug, L.A.2
Thomas, B.C.3
Sharon, I.4
Castelle, C.J.5
Singh, A.6
-
10
-
-
0004022906
-
-
Fourth edition,, University Press of Colorado
-
Bryan, T.S. (2008) The geysers of Yellowstone. Fourth edition, University Press of Colorado.
-
(2008)
The geysers of Yellowstone
-
-
Bryan, T.S.1
-
11
-
-
84883287892
-
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment
-
Castelle, C.J., Hug, L.A., Wrighton, K.C., Thomas, B.C., Williams, K.H., Wu, D., et al. (2013) Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nat Commun 4: 2120.
-
(2013)
Nat Commun
, vol.4
, pp. 2120
-
-
Castelle, C.J.1
Hug, L.A.2
Wrighton, K.C.3
Thomas, B.C.4
Williams, K.H.5
Wu, D.6
-
12
-
-
84926417610
-
Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
-
Castelle, C.J., Wrighton, K.C., Thomas, B.C., Hug, L.A., Brown, C.T., Wilkins, M.J., et al. (2015) Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling. Curr Biol. 25: 690–701.
-
(2015)
Curr Biol.
, vol.25
, pp. 690-701
-
-
Castelle, C.J.1
Wrighton, K.C.2
Thomas, B.C.3
Hug, L.A.4
Brown, C.T.5
Wilkins, M.J.6
-
13
-
-
0036606576
-
Fast algorithms for large-scale genome alignment and comparison
-
Delcher, A.L., Phillippy, A., Carlton, J., and Salzberg, S.L. (2002) Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res 30: 2478–2483.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2478-2483
-
-
Delcher, A.L.1
Phillippy, A.2
Carlton, J.3
Salzberg, S.L.4
-
14
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic acids Res 32: 1792–1797.
-
(2004)
Nucleic acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
15
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R.C. (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460–2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
16
-
-
85028258790
-
Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla
-
Emerson, J.B., Thomas, B.C., Alvarez, W., and Banfield, J.F. (2016) Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla. Environ Microbiol 18: 1686–1703.
-
(2016)
Environ Microbiol
, vol.18
, pp. 1686-1703
-
-
Emerson, J.B.1
Thomas, B.C.2
Alvarez, W.3
Banfield, J.F.4
-
17
-
-
85013360847
-
-
In, Third Annual Conference on Carbon Capture and Sequestration, Alexandria, VA
-
2-charged systems as analogs for geologic sequestration sites. In Third Annual Conference on Carbon Capture and Sequestration, Alexandria, VA.
-
(2004)
Natural leaking CO, -charged systems as analogs for geologic sequestration sites
-
-
Evans, J.P.1
Heath, J.2
Shipton, Z.K.3
Kolesar, P.T.4
Dockrill, B.5
Williams, A.6
-
18
-
-
79959931985
-
HMMER web server: interactive sequence similarity searching
-
Finn, R.D., Clements, J., and Eddy, S.R. (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res 39: W29–W37.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W29-W37
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
19
-
-
34347261317
-
Geological carbon dioxide sequestration
-
Friedmann, S.J. (2007) Geological carbon dioxide sequestration. Elements 3: 179–184.
-
(2007)
Elements
, vol.3
, pp. 179-184
-
-
Friedmann, S.J.1
-
20
-
-
77953588756
-
Phylogenetic diversity and metagenomics of candidate division OP3
-
Glöckner, J., Kube, M., Shrestha, P.M., Weber, M., Glöckner, F.O., Reinhardt, R., and Liesack, W. (2010) Phylogenetic diversity and metagenomics of candidate division OP3. Environ Microbiol 12: 1218–1229.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1218-1229
-
-
Glöckner, J.1
Kube, M.2
Shrestha, P.M.3
Weber, M.4
Glöckner, F.O.5
Reinhardt, R.6
Liesack, W.7
-
21
-
-
84895067625
-
Candidatus Sonnebornia yantaiensis”, a member of candidate division OD1, as intracellular bacteria of the ciliated protist Paramecium bursaria (Ciliophora, Oligohymenophorea)
-
Gong, J., Qing, Y., Guo, X., and Warren, A. (2014) “Candidatus Sonnebornia yantaiensis”, a member of candidate division OD1, as intracellular bacteria of the ciliated protist Paramecium bursaria (Ciliophora, Oligohymenophorea). Syst Appl Microbiol 37: 35–41.
-
(2014)
Syst Appl Microbiol
, vol.37
, pp. 35-41
-
-
Gong, J.1
Qing, Y.2
Guo, X.3
Warren, A.4
-
23
-
-
84942279728
-
Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival
-
Greening, C., Biswas, A., Carere, C.R., Jackson, C.J., Taylor, M.C., Stott, M.B., et al. (2015) Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival. ISME J. 10: 761–777.
-
(2015)
ISME J.
, vol.10
, pp. 761-777
-
-
Greening, C.1
Biswas, A.2
Carere, C.R.3
Jackson, C.J.4
Taylor, M.C.5
Stott, M.B.6
-
24
-
-
84880743334
-
2-driven cold-water geyser, Crystal Geyser in Utah: experimental observation and mechanism analyses
-
2-driven cold-water geyser, Crystal Geyser in Utah: experimental observation and mechanism analyses. Geofluids 13: 283–297.
-
(2013)
Geofluids
, vol.13
, pp. 283-297
-
-
Han, W.S.1
Lu, M.2
McPherson, B.J.3
Keating, E.H.4
Moore, J.5
Park, E.6
-
25
-
-
84875367422
-
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community
-
Handley, K.M., VerBerkmoes, N.C., Steefel, C.I., Williams, K.H., Sharon, I., Miller, C.S., et al. (2013) Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. ISME J 7: 800–816.
-
(2013)
ISME J
, vol.7
, pp. 800-816
-
-
Handley, K.M.1
VerBerkmoes, N.C.2
Steefel, C.I.3
Williams, K.H.4
Sharon, I.5
Miller, C.S.6
-
26
-
-
84920432296
-
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
-
He, X., McLean, J.S., Edlund, A., Yooseph, S., Hall, A.P., Liu, S.Y., et al. (2015) Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle. Proc Natl Acad Sci USA 112: 244–249.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, pp. 244-249
-
-
He, X.1
McLean, J.S.2
Edlund, A.3
Yooseph, S.4
Hall, A.P.5
Liu, S.Y.6
-
27
-
-
84899786763
-
Hydrogeochemical characterization of leaking, carbon dioxide-charged fault zones in east-central Utah, with implications for geologic carbon storage
-
Heath, J.E., Lachmar, T.E., Evans, J.P., Kolesar, P.T., and Williams, A.P. (2009) Hydrogeochemical characterization of leaking, carbon dioxide-charged fault zones in east-central Utah, with implications for geologic carbon storage. Carbon Sequestration and Its Role in the Global Carbon Cycle 183: 147–158.
-
(2009)
Carbon Sequestration and Its Role in the Global Carbon Cycle
, vol.183
, pp. 147-158
-
-
Heath, J.E.1
Lachmar, T.E.2
Evans, J.P.3
Kolesar, P.T.4
Williams, A.P.5
-
29
-
-
84960156335
-
Genome-resolved metagenomic analysis reveals roles for candidate phyla and other microbial community members in biogeochemical transformations in oil reservoirs
-
Article e01669-15
-
Hu, P., Tom, L., Singh, A., Thomas, B.C., Baker, B.J., Piceno, Y.M., et al. (2016) Genome-resolved metagenomic analysis reveals roles for candidate phyla and other microbial community members in biogeochemical transformations in oil reservoirs. MBio 7: Article e01669-15.
-
(2016)
MBio
, vol.7
-
-
Hu, P.1
Tom, L.2
Singh, A.3
Thomas, B.C.4
Baker, B.J.5
Piceno, Y.M.6
-
30
-
-
84903383681
-
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling
-
Hug, L.A., Castelle, C.J., Wrighton, K.C., Thomas, B.C., Sharon, I., Frischkorn, K.R., et al. (2013) Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome 1: 22.
-
(2013)
Microbiome
, vol.1
, pp. 22
-
-
Hug, L.A.1
Castelle, C.J.2
Wrighton, K.C.3
Thomas, B.C.4
Sharon, I.5
Frischkorn, K.R.6
-
31
-
-
0031912606
-
Novel division level bacterial diversity in a Yellowstone hot spring
-
Hugenholtz, P., Pitulle, C., Hershberger, K.L., and Pace, N.R. (1998) Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180: 366–376.
-
(1998)
J Bacteriol
, vol.180
, pp. 366-376
-
-
Hugenholtz, P.1
Pitulle, C.2
Hershberger, K.L.3
Pace, N.R.4
-
32
-
-
77952299957
-
Prodigal: prokaryotic gene recognition and translation initiation site identification
-
Hyatt, D., Chen, G.L., Locascio, P.F., Land, M.L., Larimer, F.W., and Hauser, L.J. (2010) Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinform 11: 119.
-
(2010)
BMC Bioinform
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
-
33
-
-
0034836201
-
ATP-citrate lyase from the green sulfur bacterium Chlorobium limicola is a heteromeric enzyme composed of two distinct gene products
-
Kanao, T., Fukui, T., Atomi, H., and Imanaka, T. (2001) ATP-citrate lyase from the green sulfur bacterium Chlorobium limicola is a heteromeric enzyme composed of two distinct gene products. Eur J Biochem 268: 1670–1678.
-
(2001)
Eur J Biochem
, vol.268
, pp. 1670-1678
-
-
Kanao, T.1
Fukui, T.2
Atomi, H.3
Imanaka, T.4
-
34
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa, M., and Goto, S. (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27–30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
35
-
-
84887151854
-
Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla
-
Kantor, R.S., Wrighton, K.C., Handley, K.M., Sharon, I., Hug, L.A., Castelle, C.J., et al. (2013) Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. MBio 4: e00708–e00713.
-
(2013)
MBio
, vol.4
, pp. e00708-e00713
-
-
Kantor, R.S.1
Wrighton, K.C.2
Handley, K.M.3
Sharon, I.4
Hug, L.A.5
Castelle, C.J.6
-
36
-
-
84956583385
-
Single-cell genomics of uncultivated deep-branching magnetotactic bacteria reveals a conserved set of magnetosome genes
-
Kolinko, S., Richter, M., Glöckner, F.O., Brachmann, A., and Schüler, D. (2015) Single-cell genomics of uncultivated deep-branching magnetotactic bacteria reveals a conserved set of magnetosome genes. Environ Microbiol 18: 21–37.
-
(2015)
Environ Microbiol
, vol.18
, pp. 21-37
-
-
Kolinko, S.1
Richter, M.2
Glöckner, F.O.3
Brachmann, A.4
Schüler, D.5
-
37
-
-
84855480998
-
Single-cell analysis reveals a novel uncultivated magnetotactic bacterium within the candidate division OP3
-
Kolinko, S., Jogler, C., Katzmann, E., Wanner, G., Peplies, J., and Schüler, D. (2012) Single-cell analysis reveals a novel uncultivated magnetotactic bacterium within the candidate division OP3. Environ Microbiol 14: 1709–1721.
-
(2012)
Environ Microbiol
, vol.14
, pp. 1709-1721
-
-
Kolinko, S.1
Jogler, C.2
Katzmann, E.3
Wanner, G.4
Peplies, J.5
Schüler, D.6
-
39
-
-
33947544193
-
2 from storage reservoirs: identification of features, events, and processes and lessons learned
-
2 from storage reservoirs: identification of features, events, and processes and lessons learned. Environ Geol 52: 457–467.
-
(2007)
Environ Geol
, vol.52
, pp. 457-467
-
-
Lewicki, J.L.1
Birkholzer, J.2
Tsang, C.-F.3
-
40
-
-
33846530630
-
Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila
-
Markert, S., Arndt, C., Felbeck, H., Becher, D., Sievert, S.M., Hugler, M., et al. (2007) Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila. Science 315: 247–250.
-
(2007)
Science
, vol.315
, pp. 247-250
-
-
Markert, S.1
Arndt, C.2
Felbeck, H.3
Becher, D.4
Sievert, S.M.5
Hugler, M.6
-
41
-
-
84871718657
-
A missing link between complex I and group 4 membrane-bound [NiFe] hydrogenases
-
Marreiros, B.C., Batista, A.P., Duarte, A.M., and Pereira, M.M. (2013) A missing link between complex I and group 4 membrane-bound [NiFe] hydrogenases. Biochim Biophys Acta 1827: 198–209.
-
(2013)
Biochim Biophys Acta
, vol.1827
, pp. 198-209
-
-
Marreiros, B.C.1
Batista, A.P.2
Duarte, A.M.3
Pereira, M.M.4
-
42
-
-
11144328679
-
-
Utah
-
Mayo, A.L., Shrum, D.B., and Chidsey Jr, T.C. (1991) Factors Contributing to Exsolving Carbon Dioxide in Ground Water Systems in the Colorado Plateau, Utah, pp. 335–342.
-
(1991)
Factors Contributing to Exsolving Carbon Dioxide in Ground Water Systems in the Colorado Plateau
, pp. 335-342
-
-
Mayo, A.L.1
Shrum, D.B.2
Chidsey, T.C.3
-
44
-
-
84880736052
-
The cold water geyser of Utah, II: observation of Crystal Geyser
-
Murray, C. (1989) The cold water geyser of Utah, II: observation of Crystal Geyser. Geyser Observation Study Assoc 2: 133–139.
-
(1989)
Geyser Observation Study Assoc
, vol.2
, pp. 133-139
-
-
Murray, C.1
-
46
-
-
84946094179
-
Rfam 12.0: updates to the RNA families database
-
Nawrocki, E.P., Burge, S.W., Bateman, A., Daub, J., Eberhardt, R.Y., Eddy, S.R., et al. (2015) Rfam 12.0: updates to the RNA families database. Nucleic Acids Res 43: D130–D137.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D130-D137
-
-
Nawrocki, E.P.1
Burge, S.W.2
Bateman, A.3
Daub, J.4
Eberhardt, R.Y.5
Eddy, S.R.6
-
47
-
-
79955598535
-
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
-
Nunoura, T., Takaki, Y., Kakuta, J., Nishi, S., Sugahara, J., Kazama, H., et al. (2011) Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acids Res 39: 3204–3223.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3204-3223
-
-
Nunoura, T.1
Takaki, Y.2
Kakuta, J.3
Nishi, S.4
Sugahara, J.5
Kazama, H.6
-
48
-
-
84861760530
-
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
-
Peng, Y., Leung, H.C., Yiu, S.M., and Chin, F.Y. (2012) IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics 28: 1420–1428.
-
(2012)
Bioinformatics
, vol.28
, pp. 1420-1428
-
-
Peng, Y.1
Leung, H.C.2
Yiu, S.M.3
Chin, F.Y.4
-
50
-
-
84923384677
-
Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface
-
Probst, A.J., Weinmaier, T., Raymann, K., Perras, A., Emerson, J.B., Rattei, T., et al. (2014) Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface. Nat Commun 5: 5497.
-
(2014)
Nat Commun
, vol.5
, pp. 5497
-
-
Probst, A.J.1
Weinmaier, T.2
Raymann, K.3
Perras, A.4
Emerson, J.B.5
Rattei, T.6
-
51
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., and Glöckner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188–7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
52
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke, C., Schwientek, P., Sczyrba, A., Ivanova, N.N., Anderson, I.J., Cheng, J.F., et al. (2013) Insights into the phylogeny and coding potential of microbial dark matter. Nature 499: 431–437.
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
Cheng, J.F.6
-
53
-
-
85013457653
-
2-tolerant Lactobacillus strain from Crystal Geyser, Utah, USA
-
2-tolerant Lactobacillus strain from Crystal Geyser, Utah, USA. Front Earth Sci 3: 41.
-
(2015)
Front Earth Sci
, vol.3
, pp. 41
-
-
Santillan, E.F.U.1
Shanahan, T.M.2
Omelon, C.R.3
Major, J.R.4
Bennett, P.C.5
-
54
-
-
33847157932
-
Archaeal type III RuBisCOs function in a pathway for AMP metabolism
-
Sato, T., Atomi, H., and Imanaka, T. (2007) Archaeal type III RuBisCOs function in a pathway for AMP metabolism. Science 315: 1003–1006.
-
(2007)
Science
, vol.315
, pp. 1003-1006
-
-
Sato, T.1
Atomi, H.2
Imanaka, T.3
-
55
-
-
67649413347
-
The iron-hydrogenase of Thermotoga maritima utilizes ferredoxin and NADH synergistically: a new perspective on anaerobic hydrogen production
-
Schut, G.J., and Adams, M.W. (2009) The iron-hydrogenase of Thermotoga maritima utilizes ferredoxin and NADH synergistically: a new perspective on anaerobic hydrogen production. J Bacteriol 191: 4451–4457.
-
(2009)
J Bacteriol
, vol.191
, pp. 4451-4457
-
-
Schut, G.J.1
Adams, M.W.2
-
56
-
-
84871956840
-
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
-
Sharon, I., Morowitz, M.J., Thomas, B.C., Costello, E.K., Relman, D.A., and Banfield, J.F. (2013) Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res 23: 111–120.
-
(2013)
Genome Res
, vol.23
, pp. 111-120
-
-
Sharon, I.1
Morowitz, M.J.2
Thomas, B.C.3
Costello, E.K.4
Relman, D.A.5
Banfield, J.F.6
-
57
-
-
84882295148
-
2-charged systems as analogs for failed geologic storage reservoirs
-
In, Thomas, D.C., Benson, S.M., (eds), Elsevier
-
2-charged systems as analogs for failed geologic storage reservoirs. In Carbon Dioxide Capture for Storage in Deep Geologic Formations–Results from the CO2 Capture Project. Thomas, D.C., and Benson, S.M. (eds): Elsevier, pp. 699–712.
-
(2006)
Carbon Dioxide Capture for Storage in Deep Geologic Formations–Results from the CO2 Capture Project
, pp. 699-712
-
-
Shipton, Z.K.1
Evans, J.P.2
Dockrill, B.3
Heath, J.4
Williams, A.5
Kirchner, D.6
Kolesar, P.T.7
-
58
-
-
84868629743
-
Genomic insights into syntrophy: the paradigm for anaerobic metabolic cooperation
-
Sieber, J.R., McInerney, M.J., and Gunsalus, R.P. (2012) Genomic insights into syntrophy: the paradigm for anaerobic metabolic cooperation. Annu Rev Microbiol 66: 429–452.
-
(2012)
Annu Rev Microbiol
, vol.66
, pp. 429-452
-
-
Sieber, J.R.1
McInerney, M.J.2
Gunsalus, R.P.3
-
59
-
-
80053123349
-
Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium
-
Singer, E., Emerson, D., Webb, E.A., Barco, R.A., Kuenen, J.G., Nelson, W.C., et al. (2011) Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium. PLoS One 6: e25386.
-
(2011)
PLoS One
, vol.6
-
-
Singer, E.1
Emerson, D.2
Webb, E.A.3
Barco, R.A.4
Kuenen, J.G.5
Nelson, W.C.6
-
60
-
-
84907259445
-
Axenic culture of a candidate division TM7 bacterium from the human oral cavity and biofilm interactions with other oral bacteria
-
Soro, V., Dutton, L.C., Sprague, S.V., Nobbs, A.H., Ireland, A.J., Sandy, J.R., et al. (2014) Axenic culture of a candidate division TM7 bacterium from the human oral cavity and biofilm interactions with other oral bacteria. Appl Environ Microbiol 80: 6480–6489.
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 6480-6489
-
-
Soro, V.1
Dutton, L.C.2
Sprague, S.V.3
Nobbs, A.H.4
Ireland, A.J.5
Sandy, J.R.6
-
61
-
-
14644397888
-
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis, A., Ludwig, T., and Meier, H. (2005) RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21: 456–463.
-
(2005)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
62
-
-
34347388470
-
UniRef: comprehensive and non-redundant UniProt reference clusters
-
Suzek, B.E., Huang, H., McGarvey, P., Mazumder, R., and Wu, C.H. (2007) UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 23: 1282–1288.
-
(2007)
Bioinformatics
, vol.23
, pp. 1282-1288
-
-
Suzek, B.E.1
Huang, H.2
McGarvey, P.3
Mazumder, R.4
Wu, C.H.5
-
63
-
-
75849153303
-
The Universal Protein Resource (UniProt) in 2010
-
UniProt, C. (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res 38: D142–D148.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D142-D148
-
-
UniProt, C.1
-
64
-
-
84876580700
-
MicroScope - an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
-
Vallenet, D., Belda, E., Calteau, A., Cruveiller, S., Engelen, S., Lajus, A., et al. (2013) MicroScope - an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data. Nucleic Acids Res 41: D636–D647.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D636-D647
-
-
Vallenet, D.1
Belda, E.2
Calteau, A.3
Cruveiller, S.4
Engelen, S.5
Lajus, A.6
-
65
-
-
2142653130
-
Molecular biology of microbial hydrogenases
-
Vignais, P.M., and Colbeau, A. (2004) Molecular biology of microbial hydrogenases. Current Issues Mol Biol 6: 159–188.
-
(2004)
Current Issues Mol Biol
, vol.6
, pp. 159-188
-
-
Vignais, P.M.1
Colbeau, A.2
-
70
-
-
0032499758
-
Prokaryotes: the unseen majority
-
Whitman, W.B., Coleman, D.C., and Wiebe, W.J. (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci USA 95: 6578–6583.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 6578-6583
-
-
Whitman, W.B.1
Coleman, D.C.2
Wiebe, W.J.3
-
72
-
-
84866772472
-
Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla
-
Wrighton, K.C., Thomas, B.C., Sharon, I., Miller, C.S., Castelle, C.J., VerBerkmoes, N.C., et al. (2012) Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science 337: 1661–1665.
-
(2012)
Science
, vol.337
, pp. 1661-1665
-
-
Wrighton, K.C.1
Thomas, B.C.2
Sharon, I.3
Miller, C.S.4
Castelle, C.J.5
VerBerkmoes, N.C.6
-
73
-
-
84903395728
-
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer
-
Wrighton, K.C., Castelle, C.J., Wilkins, M.J., Hug, L.A., Sharon, I., Thomas, B.C., et al. (2014) Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer. ISME J 8: 1452–1463.
-
(2014)
ISME J
, vol.8
, pp. 1452-1463
-
-
Wrighton, K.C.1
Castelle, C.J.2
Wilkins, M.J.3
Hug, L.A.4
Sharon, I.5
Thomas, B.C.6
-
74
-
-
84906272014
-
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
-
Yarza, P., Yilmaz, P., Pruesse, E., Glockner, F.O., Ludwig, W., Schleifer, K.H., et al. (2014) Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat Rev Microbiol 12: 635–645.
-
(2014)
Nat Rev Microbiol
, vol.12
, pp. 635-645
-
-
Yarza, P.1
Yilmaz, P.2
Pruesse, E.3
Glockner, F.O.4
Ludwig, W.5
Schleifer, K.H.6
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