메뉴 건너뛰기




Volumn 7, Issue 1, 2016, Pages

Genome-resolved metagenomic analysis reveals roles for candidate phyla and other microbial community members in biogeochemical transformations in oil reservoirs

Author keywords

[No Author keywords available]

Indexed keywords

HYDROCARBON; HYDROGEN SULFIDE; RNA 16S; SULFATE;

EID: 84960156335     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.01669-15     Document Type: Article
Times cited : (118)

References (86)
  • 1
    • 0344011969 scopus 로고    scopus 로고
    • Biological activity in the deep subsurface and the origin of heavy oil
    • Head IM, Jones DM, Larter SR. 2003. Biological activity in the deep subsurface and the origin of heavy oil. Nature 426:344–352. http://dx.doi.org/10.1038/nature02134.
    • (2003) Nature , vol.426 , pp. 344-352
    • Head, I.M.1    Jones, D.M.2    Larter, S.R.3
  • 3
    • 4644280496 scopus 로고    scopus 로고
    • Anaerobic hydrocarbon biodegradation in deep subsurface oil reservoirs
    • Aitken CM, Jones DM, Larter SR. 2004. Anaerobic hydrocarbon biodegradation in deep subsurface oil reservoirs. Nature 431:291–294. http://dx.doi.org/10.1038/Nature02922.
    • (2004) Nature , vol.431 , pp. 291-294
    • Aitken, C.M.1    Jones, D.M.2    Larter, S.R.3
  • 4
    • 33746086811 scopus 로고    scopus 로고
    • Biodegradation of petroleum in subsurface geological reservoirs
    • In Ollivier B, Magot M (ed), ASM Press, Washington, DC
    • Huang H, Larter S. 2005. Biodegradation of petroleum in subsurface geological reservoirs, p 91–121. In Ollivier B, Magot M (ed), Petroleum biology. ASM Press, Washington, DC.
    • (2005) Petroleum Biology , pp. 91-121
    • Huang, H.1    Larter, S.2
  • 6
    • 0021729228 scopus 로고
    • Biodegradation of crude oils in reservoirs
    • In Brooks J, Welte J, Academic Press, London, United Kingdom
    • Connan J. 1984. Biodegradation of crude oils in reservoirs, p 299–335. In Brooks J, Welte J (ed), Advances in petroleum geochemistry, vol. 1. Academic Press, London, United Kingdom.
    • (1984) Advances in Petroleum Geochemistry , vol.1 , pp. 299-335
    • Connan, J.1
  • 7
    • 79960354818 scopus 로고    scopus 로고
    • A comparative genomic analysis of energy metabolism in sulfate reducing bacteria and archaea
    • Pereira IA, Ramos AR, Grein F, Marques MC, da Silva SM, Venceslau SS. 2011. A comparative genomic analysis of energy metabolism in sulfate reducing bacteria and archaea. Front Microbiol 2:69. http://dx.doi.org/10.3389/Fmicb.2011.00069.
    • (2011) Front Microbiol , vol.2 , pp. 69
    • Pereira, I.A.1    Ramos, A.R.2    Grein, F.3    Marques, M.C.4    Da Silva, S.M.5    Venceslau, S.S.6
  • 8
    • 82455164177 scopus 로고    scopus 로고
    • Biological souring and mitigation in oil reservoirs
    • Gieg LM, Jack TR, Foght JM. 2011. Biological souring and mitigation in oil reservoirs. Appl Microbiol Biotechnol 92:263–282. http://dx.doi.org/10.1007/s00253-011-3542-6.
    • (2011) Appl Microbiol Biotechnol , vol.92 , pp. 263-282
    • Gieg, L.M.1    Jack, T.R.2    Foght, J.M.3
  • 9
    • 84897952323 scopus 로고    scopus 로고
    • Roles of thermophilic thiosulfate-reducing bacteria and methanogenic archaea in the biocorrosion of oil pipelines
    • Liang R, Grizzle RS, Duncan KE, McInerney MJ, Suflita JM. 2014. Roles of thermophilic thiosulfate-reducing bacteria and methanogenic archaea in the biocorrosion of oil pipelines. Front Microbiol 5:89. http://dx.doi.org/10.3389/fmicb.2014.00089.
    • (2014) Front Microbiol , vol.5 , pp. 89
    • Liang, R.1    Grizzle, R.S.2    Duncan, K.E.3    McInerney, M.J.4    Suflita, J.M.5
  • 10
    • 84892954948 scopus 로고    scopus 로고
    • The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities
    • Lewin A, Johansen J, Wentzel A, Kotlar HK, Drabløs F, Valla S. 2014. The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities. Environ Microbiol 16:545–558. http://dx.doi.org/10.1111/1462-2920.12181.
    • (2014) Environ Microbiol , vol.16 , pp. 545-558
    • Lewin, A.1    Johansen, J.2    Wentzel, A.3    Kotlar, H.K.4    Drabløs, F.5    Valla, S.6
  • 12
    • 0347794946 scopus 로고    scopus 로고
    • Recent studies on bacterial populations and processes in subseafloor sediments: A review
    • Parkes RJ, Cragg BA, Wellsbury P. 2000. Recent studies on bacterial populations and processes in subseafloor sediments: a review. Hydrogeol J 8:11–28. http://dx.doi.org/10.1007/Pl00010971.
    • (2000) Hydrogeol J , vol.8 , pp. 11-28
    • Parkes, R.J.1    Cragg, B.A.2    Wellsbury, P.3
  • 13
    • 0037086196 scopus 로고    scopus 로고
    • Metabolic activity of subsurface life in deep-sea sediments
    • D’Hondt S, Rutherford S, Spivack AJ. 2002. Metabolic activity of subsurface life in deep-sea sediments. Science 295:2067–2070. http://dx.doi.org/10.1126/science.1064878.
    • (2002) Science , vol.295 , pp. 2067-2070
    • D’Hondt, S.1    Rutherford, S.2    Spivack, A.J.3
  • 14
    • 81055130204 scopus 로고    scopus 로고
    • Deep subseafloor microbial cells on physiological standby
    • Jørgensen BB. 2011. Deep subseafloor microbial cells on physiological standby. Proc Natl Acad Sci U S A 108:18193–18194. http://dx.doi.org/10.1073/pnas.1115421108.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 18193-18194
    • Jørgensen, B.B.1
  • 15
    • 84867043272 scopus 로고    scopus 로고
    • Global distribution of microbial abundance and biomass in subseafloor sediment
    • Kallmeyer J, Pockalny R, Adhikari RR, Smith DC, D’Hondt S. 2012. Global distribution of microbial abundance and biomass in subseafloor sediment. Proc Natl Acad Sci U S A 109:16213–16216. http://dx.doi.org/10.1073/pnas.1203849109.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 16213-16216
    • Kallmeyer, J.1    Pockalny, R.2    Adhikari, R.R.3    Smith, D.C.4    D’Hondt, S.5
  • 16
    • 78249275536 scopus 로고    scopus 로고
    • Methanogenesis, sulfate reduction and crude oil biodegradation in hot Alaskan oilfields
    • Gieg LM, Davidova IA, Duncan KE, Suflita JM. 2010. Methanogenesis, sulfate reduction and crude oil biodegradation in hot Alaskan oilfields. Environ Microbiol 12:3074–3086. http://dx.doi.org/10.1111/j.1462-2920.2010.02282.x.
    • (2010) Environ Microbiol , vol.12 , pp. 3074-3086
    • Gieg, L.M.1    Davidova, I.A.2    Duncan, K.E.3    Suflita, J.M.4
  • 17
    • 0029808088 scopus 로고    scopus 로고
    • Characterization of thermophilic consortia from two souring oil reservoirs
    • Mueller RF, Nielsen PH. 1996. Characterization of thermophilic consortia from two souring oil reservoirs. Appl Environ Microbiol 62: 3083–3087.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3083-3087
    • Mueller, R.F.1    Nielsen, P.H.2
  • 18
    • 0029974630 scopus 로고    scopus 로고
    • Distribution of thermophilic marine sulfate reducers in North Sea oil field waters and oil reservoirs
    • Nilsen RK, Beeder J, Thorstenson T, Torsvik T. 1996. Distribution of thermophilic marine sulfate reducers in North Sea oil field waters and oil reservoirs. Appl Environ Microbiol 62:1793–1798.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1793-1798
    • Nilsen, R.K.1    Beeder, J.2    Thorstenson, T.3    Torsvik, T.4
  • 19
    • 0029939361 scopus 로고    scopus 로고
    • Desulfotomaculum thermocisternum sp. Nov., a sulfate reducer isolated from a hot North Sea oil reservoir
    • Nilsen RK, Torsvik T, Lien T. 1996. Desulfotomaculum thermocisternum sp. nov., a sulfate reducer isolated from a hot North Sea oil reservoir. Int J Syst Bacteriol 46:397–402. http://dx.doi.org/10.1099/00207713-46-2-397.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 397-402
    • Nilsen, R.K.1    Torsvik, T.2    Lien, T.3
  • 20
    • 0033952662 scopus 로고    scopus 로고
    • Culturedependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs
    • Orphan VJ, Taylor LT, Hafenbradl D, Delong EF. 2000. Culturedependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs. Appl Environ Microbiol 66:700–711. http://dx.doi.org/10.1128/Aem.66.2.700-711.2000.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 700-711
    • Orphan, V.J.1    Taylor, L.T.2    Hafenbradl, D.3    Delong, E.F.4
  • 21
    • 84905021432 scopus 로고    scopus 로고
    • Conversion of crude oil to methane by a microbial consortium enriched from oil reservoir production waters
    • Berdugo-Clavijo C, Gieg LM. 2014. Conversion of crude oil to methane by a microbial consortium enriched from oil reservoir production waters. Front Microbiol 5:197. http://dx.doi.org/10.3389/Fmicb.2014.00197.
    • (2014) Front Microbiol , vol.5 , pp. 197
    • Berdugo-Clavijo, C.1    Gieg, L.M.2
  • 23
    • 84894380995 scopus 로고    scopus 로고
    • Identification of crude-oil components and microorganisms that cause souring under anaerobic conditions
    • Hasegawa R, Toyama K, Miyanaga K, Tanji Y. 2014. Identification of crude-oil components and microorganisms that cause souring under anaerobic conditions. Appl Microbiol Biotechnol 98:1853–1861. http://dx.doi.org/10.1007/S00253-013-5107-3.
    • (2014) Appl Microbiol Biotechnol , vol.98 , pp. 1853-1861
    • Hasegawa, R.1    Toyama, K.2    Miyanaga, K.3    Tanji, Y.4
  • 24
    • 84862890899 scopus 로고    scopus 로고
    • Key players and team play: Anaerobic microbial communities in hydrocarbon-contaminated aquifers
    • Kleinsteuber S, Schleinitz KM, Vogt C. 2012. Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers. Appl Microbiol Biotechnol 94:851–873. http://dx.doi.org/10.1007/s00253-012-4025-0.
    • (2012) Appl Microbiol Biotechnol , vol.94 , pp. 851-873
    • Kleinsteuber, S.1    Schleinitz, K.M.2    Vogt, C.3
  • 25
    • 84856771287 scopus 로고    scopus 로고
    • Phylogenetic diversity of microbial communities associated with the crude-oil, large-insoluble-particle and formation-water components of the reservoir fluid from a non-flooded high-temperature petroleum reservoir
    • Kobayashi H, Endo K, Sakata S, Mayumi D, Kawaguchi H, Ikarashi M, Miyagawa Y, Maeda H, Sato K. 2012. Phylogenetic diversity of microbial communities associated with the crude-oil, large-insoluble-particle and formation-water components of the reservoir fluid from a non-flooded high-temperature petroleum reservoir. J Biosci Bioeng 113:204–210. http://dx.doi.org/10.1016/J.Jbiosc.2011.09.015.
    • (2012) J Biosci Bioeng , vol.113 , pp. 204-210
    • Kobayashi, H.1    Endo, K.2    Sakata, S.3    Mayumi, D.4    Kawaguchi, H.5    Ikarashi, M.6    Miyagawa, Y.7    Maeda, H.8    Sato, K.9
  • 27
    • 58149216600 scopus 로고    scopus 로고
    • Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods
    • Pham VD, Hnatow LL, Zhang S, Fallon RD, Jackson SC, Tomb JF, DeLong EF, Keeler SJ. 2009. Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods. Environ Microbiol 11:176–187. http://dx.doi.org/10.1111/j.1462-2920.2008.01751.x.
    • (2009) Environ Microbiol , vol.11 , pp. 176-187
    • Pham, V.D.1    Hnatow, L.L.2    Zhang, S.3    Fallon, R.D.4    Jackson, S.C.5    Tomb, J.F.6    Delong, E.F.7    Keeler, S.J.8
  • 28
    • 0029662670 scopus 로고    scopus 로고
    • Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfatereducing, fermentative, and sulfide-oxidizing bacteria
    • Voordouw G, Armstrong SM, Reimer MF, Fouts B, Telang AJ, Shen Y, Gevertz D. 1996. Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfatereducing, fermentative, and sulfide-oxidizing bacteria. Appl Environ Microbiol 62:1623–1629.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1623-1629
    • Voordouw, G.1    Armstrong, S.M.2    Reimer, M.F.3    Fouts, B.4    Telang, A.J.5    Shen, Y.6    Gevertz, D.7
  • 29
    • 84899966961 scopus 로고    scopus 로고
    • Comparison of bacterial community in aqueous and oil phases of water-flooded petroleum reservoirs using pyrosequencing and clone library approaches
    • Wang LY, Ke WJ, Sun XB, Liu JF, Gu JD, Mu BZ. 2014. Comparison of bacterial community in aqueous and oil phases of water-flooded petroleum reservoirs using pyrosequencing and clone library approaches. Appl Microbiol Biotechnol 98:4209–4221. http://dx.doi.org/10.1007/S00253-013-5472-Y
    • (2014) Appl Microbiol Biotechnol , vol.98 , pp. 4209-4221
    • Wang, L.Y.1    Ke, W.J.2    Sun, X.B.3    Liu, J.F.4    Gu, J.D.5    Mu, B.Z.6
  • 33
    • 84868294021 scopus 로고    scopus 로고
    • Microbial diversity in long-term water-flooded oil reservoirs with different in situ temperatures in China
    • Zhang F, She YH, Chai LJ, Banat IM, Zhang XT, Shu FC, Wang ZL, Yu LJ, Hou DJ. 2012. Microbial diversity in long-term water-flooded oil reservoirs with different in situ temperatures in China. Sci Rep 2:760. http://dx.doi.org/10.1038/Srep00760.
    • (2012) Sci Rep , vol.2 , pp. 760
    • Zhang, F.1    She, Y.H.2    Chai, L.J.3    Banat, I.M.4    Zhang, X.T.5    Shu, F.C.6    Wang, Z.L.7    Yu, L.J.8    Hou, D.J.9
  • 38
    • 61449095502 scopus 로고    scopus 로고
    • Desulfonauticus autotrophicus sp. Nov., a novel thermophilic sulfate-reducing bacterium isolated from oil-production water and emended description of the genus Desulfonauticus
    • Mayilraj S, Kaksonen AH, Cord-Ruwisch R, Schumann P, Spröer C, Tindall BJ, Spring S. 2009. Desulfonauticus autotrophicus sp. nov., a novel thermophilic sulfate-reducing bacterium isolated from oil-production water and emended description of the genus Desulfonauticus. Extremophiles 13:247–255. http://dx.doi.org/10.1007/s00792-008-0212-4.
    • (2009) Extremophiles , vol.13 , pp. 247-255
    • Mayilraj, S.1    Kaksonen, A.H.2    Cord-Ruwisch, R.3    Schumann, P.4    Spröer, C.5    Tindall, B.J.6    Spring, S.7
  • 39
    • 84999048215 scopus 로고    scopus 로고
    • Draft genome sequence of Thermoanaerobacter sp. Strain A7A, reconstructed from a metagenome obtained from a high-temperature hydrocarbon reservoir in the Bass Strait, Australia
    • Li D, Greenfield P, Rosewarne CP, Midgley DJ. 2013. Draft genome sequence of Thermoanaerobacter sp. strain A7A, reconstructed from a metagenome obtained from a high-temperature hydrocarbon reservoir in the Bass Strait, Australia. Genome Announc 1:e00701-13. http://dx.doi.org/10.1128/genomeA.00701-13.
    • (2013) Genome Announc , vol.1 , pp. e00e13-e00701
    • Li, D.1    Greenfield, P.2    Rosewarne, C.P.3    Midgley, D.J.4
  • 40
    • 84960134096 scopus 로고    scopus 로고
    • Microbial control of oceanic carbon flux: The plot thickens, p 7–8
    • In Jiao N, Azam F, Sanders S, AAAS, Washington, DC
    • Azam F. 2010. Microbial control of oceanic carbon flux: the plot thickens, p 7–8. In Jiao N, Azam F, Sanders S (ed), Microbial carbon pump in the ocean. AAAS, Washington, DC.
    • (2010) Microbial Carbon Pump in the Ocean
    • Azam, F.1
  • 41
    • 79953022302 scopus 로고    scopus 로고
    • The impact of microbial metabolism on marine dissolved organic matter
    • Kujawinski EB. 2011. The impact of microbial metabolism on marine dissolved organic matter. Annu Rev Mar Sci 3:567–599. http://dx.doi.org/10.1146/annurev-marine-120308-081003.
    • (2011) Annu Rev Mar Sci , vol.3 , pp. 567-599
    • Kujawinski, E.B.1
  • 42
    • 0002219895 scopus 로고
    • Xylan of siphonaceous green algae
    • Iriki Y, Suzuki T, Nisizawa K, Miwa T. 1960. Xylan of siphonaceous green algae. Nature 187:82–83. http://dx.doi.org/10.1038/187082a0.
    • (1960) Nature , vol.187 , pp. 82-83
    • Iriki, Y.1    Suzuki, T.2    Nisizawa, K.3    Miwa, T.4
  • 43
    • 85022899536 scopus 로고
    • The monosaccharide spectra of natural waters
    • Mopper K, Dawson R, Liebezeit G, Ittekkot V. 1980. The monosaccharide spectra of natural waters. Mar Chem 10:55–66. http://dx.doi.org/10.1016/0304-4203(80)90058-4.
    • (1980) Mar Chem , vol.10 , pp. 55-66
    • Mopper, K.1    Dawson, R.2    Liebezeit, G.3    Ittekkot, V.4
  • 44
    • 0021064460 scopus 로고
    • Dissolved carbohydrates in the New York bight and the variability of marine organic matter
    • Harvey GR. 1983. Dissolved carbohydrates in the New York bight and the variability of marine organic matter. Mar Chem 12:333–339. http://dx.doi.org/10.1016/0304-4203(83)90060-9.
    • (1983) Mar Chem , vol.12 , pp. 333-339
    • Harvey, G.R.1
  • 45
    • 0003316416 scopus 로고
    • Chemical studies on dissolved carbohydrates in the water samples collected from the North Pacific and Bering Sea
    • Sakugawa H, Handa N. 1985. Chemical studies on dissolved carbohydrates in the water samples collected from the North Pacific and Bering Sea. Oceanol Acta 8:185–196.
    • (1985) Oceanol Acta , vol.8 , pp. 185-196
    • Sakugawa, H.1    Handa, N.2
  • 47
    • 0033898247 scopus 로고    scopus 로고
    • Substrate specificity in polysaccharide hydrolysis: Contrasts between bottom water and sediments
    • Arnosti C. 2000. Substrate specificity in polysaccharide hydrolysis: contrasts between bottom water and sediments. Limnol Oceanogr 45: 1112–1119. http://dx.doi.org/10.4319/lo.2000.45.5.1112.
    • (2000) Limnol Oceanogr , vol.45 , pp. 1112-1119
    • Arnosti, C.1
  • 48
    • 53949089068 scopus 로고    scopus 로고
    • Functional differences between Arctic seawater and sedimentary microbial communities: Contrasts in microbial hydrolysis of complex substrates
    • Arnosti C. 2008. Functional differences between Arctic seawater and sedimentary microbial communities: contrasts in microbial hydrolysis of complex substrates. FEMS Microbiol Ecol 66:343–351. http://dx.doi.org/10.1111/j.1574-6941.2008.00587.x.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 343-351
    • Arnosti, C.1
  • 49
    • 84869143636 scopus 로고    scopus 로고
    • Draft genome sequence of the xylan-degrading marine bacterium strain S124, representing a novel species of the genus Oceanicola
    • Kwon YK, Kim JJ, Kim JH, Jeon SM, Ye BR, Jang J, Heo SJ, Park SC, Kang DH, Oh C. 2012. Draft genome sequence of the xylan-degrading marine bacterium strain S124, representing a novel species of the genus Oceanicola. J Bacteriol 194:6325. http://dx.doi.org/10.1128/JB.01614-12.
    • (2012) J Bacteriol , vol.194 , pp. 6325
    • Kwon, Y.K.1    Kim, J.J.2    Kim, J.H.3    Jeon, S.M.4    Ye, B.R.5    Jang, J.6    Heo, S.J.7    Park, S.C.8    Kang, D.H.9    Oh, C.10
  • 50
    • 38049120268 scopus 로고    scopus 로고
    • Polysaccharide hydrolysis in aggregates and free enzyme activity in aggregate-free seawater from the north-eastern Gulf of Mexico
    • Ziervogel K, Arnosti C. 2008. Polysaccharide hydrolysis in aggregates and free enzyme activity in aggregate-free seawater from the north-eastern Gulf of Mexico. Environ Microbiol 10:289–299. http://dx.doi.org/10.1111/j.1462-2920.2007.01451.x.
    • (2008) Environ Microbiol , vol.10 , pp. 289-299
    • Ziervogel, K.1    Arnosti, C.2
  • 53
    • 0027676205 scopus 로고
    • Hyperthermophilic archaea are thriving in deep north sea and Alaskan oil reservoirs
    • Stetter KO, Huber R, Blöchl E, Kurr M, Eden RD, Fielder M, Cash H, Vance I. 1993. Hyperthermophilic archaea are thriving in deep north sea and Alaskan oil reservoirs. Nature 365:743–745. http://dx.doi.org/10.1038/365743a0.
    • (1993) Nature , vol.365 , pp. 743-745
    • Stetter, K.O.1    Huber, R.2    Blöchl, E.3    Kurr, M.4    Eden, R.D.5    Fielder, M.6    Cash, H.7    Vance, I.8
  • 54
    • 61349178912 scopus 로고    scopus 로고
    • Archaeoglobus fulgidus and Thermotoga elfii, thermophilic isolates from deep geothermal water of the Paris Basin
    • Fardeau M, Goulhen F, Bruschi M, Khelifi N, Cayol J, Ignatiadis I, Guyot F, Ollivier B. 2009. Archaeoglobus fulgidus and Thermotoga elfii, thermophilic isolates from deep geothermal water of the Paris Basin. Geomicrobiol J 26:119–130. http://dx.doi.org/10.1080/01490450802674970.
    • (2009) Geomicrobiol J , vol.26 , pp. 119-130
    • Fardeau, M.1    Goulhen, F.2    Bruschi, M.3    Khelifi, N.4    Cayol, J.5    Ignatiadis, I.6    Guyot, F.7    Ollivier, B.8
  • 55
    • 84897931364 scopus 로고    scopus 로고
    • Identification of key components in the energy metabolism of the hyperthermophilic sulfatereducing archaeon Archaeoglobus fulgidus by transcriptome analyses
    • Hocking WP, Stokke R, Roalkvam I, Steen IH. 2014. Identification of key components in the energy metabolism of the hyperthermophilic sulfatereducing archaeon Archaeoglobus fulgidus by transcriptome analyses. Front Microbiol 5:95. http://dx.doi.org/10.3389/Fmicb.2014.00095.
    • (2014) Front Microbiol , vol.5 , pp. 95
    • Hocking, W.P.1    Stokke, R.2    Roalkvam, I.3    Steen, I.H.4
  • 56
    • 67649603168 scopus 로고    scopus 로고
    • Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a Siberian oil reservoir, as revealed by genome analysis
    • Mardanov AV, Ravin NV, Svetlitchnyi VA, Beletsky AV, Miroshnichenko ML, Bonch-Osmolovskaya EA, Skryabin KG. 2009. Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a Siberian oil reservoir, as revealed by genome analysis. Appl Environ Microbiol 75:4580–4588. http://dx.doi.org/10.1128/AEM.00718-09.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 4580-4588
    • Mardanov, A.V.1    Ravin, N.V.2    Svetlitchnyi, V.A.3    Beletsky, A.V.4    Miroshnichenko, M.L.5    Bonch-Osmolovskaya, E.A.6    Skryabin, K.G.7
  • 57
    • 0036021956 scopus 로고    scopus 로고
    • Thermotoga lettingae sp. Nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor
    • Balk M, Weijma J, Stams AJ. 2002. Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor. Int J Syst Evol Microbiol 52:1361–1368. http://dx.doi.org/10.1099/Ijs.0.02165-0.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 1361-1368
    • Balk, M.1    Weijma, J.2    Stams, A.J.3
  • 59
    • 84908242029 scopus 로고    scopus 로고
    • Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus
    • Khelifi N, Amin Ali O, Roche P, Grossi V, Brochier-Armanet C, Valette O, Ollivier B, Dolla A, Hirschler-Réa A. 2014. Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus. ISME J 8:2153–2166. http://dx.doi.org/10.1038/ismej.2014.58.
    • (2014) ISME J , vol.8 , pp. 2153-2166
    • Khelifi, N.1    Amin Ali, O.2    Roche, P.3    Grossi, V.4    Brochier-Armanet, C.5    Valette, O.6    Ollivier, B.7    Dolla, A.8    Hirschler-Réa, A.9
  • 60
    • 84868629743 scopus 로고    scopus 로고
    • Genomic insights into syntrophy: The paradigm for anaerobic metabolic cooperation
    • Sieber JR, McInerney MJ, Gunsalus RP. 2012. Genomic insights into syntrophy: the paradigm for anaerobic metabolic cooperation. Annu Rev Microbiol 66:429–452. http://dx.doi.org/10.1146/Annurev-Micro-090110-102844.
    • (2012) Annu Rev Microbiol , vol.66 , pp. 429-452
    • Sieber, J.R.1    McInerney, M.J.2    Gunsalus, R.P.3
  • 61
    • 0033858846 scopus 로고    scopus 로고
    • Thermacetogenium phaeum gen. Nov., sp. nov., a strictly anaerobic, thermophilic, syntrophic acetate-oxidizing bacterium
    • Hattori S, Kamagata Y, Hanada S, Shoun H. 2000. Thermacetogenium phaeum gen. nov., sp. nov., a strictly anaerobic, thermophilic, syntrophic acetate-oxidizing bacterium. Int J Syst Evol Microbiol 50:1601–1609. http://dx.doi.org/10.1099/00207713-50-4-1601.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1601-1609
    • Hattori, S.1    Kamagata, Y.2    Hanada, S.3    Shoun, H.4
  • 63
    • 0030791876 scopus 로고    scopus 로고
    • The eastern and western branches of the Wood/Ljungdahl pathway: How the east and west were won
    • Ragsdale SW. 1997. The eastern and western branches of the Wood/Ljungdahl pathway: how the east and west were won. Biofactors 6:3–11. http://dx.doi.org/10.1002/biof.5520060102.
    • (1997) Biofactors , vol.6 , pp. 3-11
    • Ragsdale, S.W.1
  • 64
    • 0036422780 scopus 로고    scopus 로고
    • Ecological consequences of the phylogenetic and physiological diversities of acetogens
    • Drake HL, Kusel K, Matthies C. 2002. Ecological consequences of the phylogenetic and physiological diversities of acetogens. Antonie von Leeuwenhoek G81:203–213. http://dx.doi.org/10.1023/A:1020514617738.
    • (2002) Antonie Von Leeuwenhoek , vol.G81 , pp. 203-213
    • Drake, H.L.1    Kusel, K.2    Matthies, C.3
  • 65
    • 33644950423 scopus 로고    scopus 로고
    • Non-sulfatereducing, syntrophic bacteria affiliated with Desulfotomaculum cluster I are widely distributed in methanogenic environments
    • Imachi H, Sekiguchi Y, Kamagata Y, Loy A, Qiu YL, Hugenholtz P, Kimura N, Wagner M, Ohashi A, Harada H. 2006. Non-sulfatereducing, syntrophic bacteria affiliated with Desulfotomaculum cluster I are widely distributed in methanogenic environments. Appl Environ Microbiol 72:2080–2091. http://dx.doi.org/10.1128/Aem.72.3.2080-2091.2006.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2080-2091
    • Imachi, H.1    Sekiguchi, Y.2    Kamagata, Y.3    Loy, A.4    Qiu, Y.L.5    Hugenholtz, P.6    Kimura, N.7    Wagner, M.8    Ohashi, A.9    Harada, H.10
  • 66
    • 38649114368 scopus 로고    scopus 로고
    • Evolution of acetoclastic methanogenesis in Methanosarcina via horizontal gene transfer from cellulolytic Clostridia
    • Fournier GP, Gogarten JP. 2008. Evolution of acetoclastic methanogenesis in Methanosarcina via horizontal gene transfer from cellulolytic Clostridia. J Bacteriol 190:1124–1127. http://dx.doi.org/10.1128/JB.01382-07.
    • (2008) J Bacteriol , vol.190 , pp. 1124-1127
    • Fournier, G.P.1    Gogarten, J.P.2
  • 68
    • 27844561449 scopus 로고    scopus 로고
    • Proteiniphilum acetatigenes gen. Nov., sp. nov., from a UASB reactor treating brewery wastewater
    • Chen S, Dong X. 2005. Proteiniphilum acetatigenes gen. nov., sp. nov., from a UASB reactor treating brewery wastewater. Int J Syst Evol Microbiol 55:2257–2261. http://dx.doi.org/10.1099/Ijs.0.63807-0.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2257-2261
    • Chen, S.1    Dong, X.2
  • 71
    • 78650901942 scopus 로고    scopus 로고
    • Functional ecology of free-living nitrogen fixation: A contemporary perspective
    • Reed SC, Cleveland CC, Townsend AR. 2011. Functional ecology of free-living nitrogen fixation: a contemporary perspective. Annu Rev Ecol Evol S42:489–512. http://dx.doi.org/10.1146/Annurev-Ecolsys-102710-145034.
    • (2011) Annu Rev Ecol Evol , vol.S42 , pp. 489-512
    • Reed, S.C.1    Cleveland, C.C.2    Townsend, A.R.3
  • 73
    • 0020764070 scopus 로고
    • Geology and regional setting of Kuparuk oil field, Alaska
    • Carman GJ, Hardwick P. 1983. Geology and regional setting of Kuparuk oil field, Alaska. AAPG Bull 67:1014–1031.
    • (1983) AAPG Bull , vol.67 , pp. 1014-1031
    • Carman, G.J.1    Hardwick, P.2
  • 74
    • 0343550325 scopus 로고    scopus 로고
    • Geology and stratigraphy of fluvio-deltaic deposits in the Ivishak formation: Applications for development of Prudhoe Bay field Alaska
    • Tye RS, Bhattacharya JP, Lorsong JA, Sindelar ST, Knock DG, Puls DD, Levinson RA. 1999. Geology and stratigraphy of fluvio-deltaic deposits in the Ivishak formation: applications for development of Prudhoe Bay field Alaska. AAPG Bull 83:1588–1623.
    • (1999) AAPG Bull , vol.83 , pp. 1588-1623
    • Tye, R.S.1    Bhattacharya, J.P.2    Lorsong, J.A.3    Sindelar, S.T.4    Knock, D.G.5    Puls, D.D.6    Levinson, R.A.7
  • 75
    • 0032703237 scopus 로고    scopus 로고
    • Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
    • Miller DN, Bryant JE, Madsen EL, Ghiorse WC. 1999. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl Environ Microbiol 65:4715–4724.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4715-4724
    • Miller, D.N.1    Bryant, J.E.2    Madsen, E.L.3    Ghiorse, W.C.4
  • 76
    • 79956041561 scopus 로고    scopus 로고
    • EMIRGE: Reconstruction of full-length ribosomal genes from microbial community short read sequencing data
    • Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. 2011. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biol 12:R44. http://dx.doi.org/10.1186/Gb-2011-12-5-R44.
    • (2011) Genome Biol , vol.12 , pp. R44
    • Miller, C.S.1    Baker, B.J.2    Thomas, B.C.3    Singer, S.W.4    Banfield, J.F.5
  • 77
    • 84861760530 scopus 로고    scopus 로고
    • IDBA-UD: A de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
    • Peng Y, Leung HC, Yiu SM, Chin FY. 2012. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics 28:1420–1428. http://dx.doi.org/10.1093/bioinformatics/bts174.
    • (2012) Bioinformatics , vol.28 , pp. 1420-1428
    • Peng, Y.1    Leung, H.C.2    Yiu, S.M.3    Chin, F.Y.4
  • 79
    • 84865561269 scopus 로고    scopus 로고
    • Gene and translation initiation site prediction in metagenomic sequences
    • Hyatt D, LoCascio PF, Hauser LJ, Uberbacher EC. 2012. Gene and translation initiation site prediction in metagenomic sequences. Bioinformatics 28:2223–2230. http://dx.doi.org/10.1093/bioinformatics/bts429.
    • (2012) Bioinformatics , vol.28 , pp. 2223-2230
    • Hyatt, D.1    Locascio, P.F.2    Hauser, L.J.3    Uberbacher, E.C.4
  • 80
    • 34347388470 scopus 로고    scopus 로고
    • UniRef: Comprehensive and non-redundant UniProt reference clusters
    • Suzek BE, Huang H, McGarvey P, Mazumder R, Wu CH. 2007. UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 23:1282–1288. http://dx.doi.org/10.1093/bioinformatics/btm098.
    • (2007) Bioinformatics , vol.23 , pp. 1282-1288
    • Suzek, B.E.1    Huang, H.2    McGarvey, P.3    Mazumder, R.4    Wu, C.H.5
  • 82
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M. 2012. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 40:D109–D114. http://dx.doi.org/10.1093/nar/gkr988.
    • (2012) Nucleic Acids Res , vol.40 , pp. D109-D114
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 84
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690. http://dx.doi.org/10.1093/bioinformatics/btl446.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.