메뉴 건너뛰기




Volumn 14, Issue 7, 2012, Pages 1709-1721

Single-cell analysis reveals a novel uncultivated magnetotactic bacterium within the candidate division OP3

Author keywords

[No Author keywords available]

Indexed keywords

FERUMOXYTOL; RNA 16S; RNA 23S;

EID: 84855480998     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2011.02609.x     Document Type: Article
Times cited : (111)

References (78)
  • 1
    • 34250777928 scopus 로고    scopus 로고
    • 'Candidatus Magnetoglobus multicellularis', a multicellular, magnetotactic prokaryote from a hypersaline environment
    • Abreu, F., Martins, J.L., Silveira, T.S., Keim, C.N., de Barros, H.G., Filho, F.J., and Lins, U. (2007) 'Candidatus Magnetoglobus multicellularis', a multicellular, magnetotactic prokaryote from a hypersaline environment. Int J Syst Evol Microbiol 57: 1318-1322.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 1318-1322
    • Abreu, F.1    Martins, J.L.2    Silveira, T.S.3    Keim, C.N.4    de Barros, H.G.5    Filho, F.J.6    Lins, U.7
  • 2
    • 80052968079 scopus 로고    scopus 로고
    • Common ancestry of iron oxide- and iron-sulfide-based biomineralization in magnetotactic bacteria
    • Abreu, F., Cantao, M.E., Nicolas, M.F., Barcellos, F.G., Morillo, V., Almeida, L.G., etal. (2011) Common ancestry of iron oxide- and iron-sulfide-based biomineralization in magnetotactic bacteria. ISME J 5: 1634-1640.
    • (2011) ISME J , vol.5 , pp. 1634-1640
    • Abreu, F.1    Cantao, M.E.2    Nicolas, M.F.3    Barcellos, F.G.4    Morillo, V.5    Almeida, L.G.6
  • 3
    • 33646559836 scopus 로고    scopus 로고
    • Environmental whole-genome amplification to access microbial populations in contaminated sediments
    • Abulencia, C.B., Wyborski, D.L., Garcia, J.A., Podar, M., Chen, W., Chang, S.H., etal.(2006) Environmental whole-genome amplification to access microbial populations in contaminated sediments. Appl Environ Microbiol 72: 3291-3301.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3291-3301
    • Abulencia, C.B.1    Wyborski, D.L.2    Garcia, J.A.3    Podar, M.4    Chen, W.5    Chang, S.H.6
  • 5
    • 34347393980 scopus 로고    scopus 로고
    • Diversity and taxonomy of magnetotactic bacteria
    • Schüler, D. (ed.). Heidelberg: Springer-Verlag Berlin
    • Amann, R., Peplies, J., and Schüler, D. (2006) Diversity and taxonomy of magnetotactic bacteria. In Magnetoreception and Magnetosomes in Bacteria. Schüler, D. (ed.). Heidelberg: Springer-Verlag Berlin, pp. 25-36.
    • (2006) Magnetoreception and Magnetosomes in Bacteria , pp. 25-36
    • Amann, R.1    Peplies, J.2    Schüler, D.3
  • 6
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., and Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 7
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 8
    • 4844225111 scopus 로고    scopus 로고
    • Magnetosome formation in prokaryotes
    • Bazylinski, D.A., and Frankel, R.B. (2004) Magnetosome formation in prokaryotes. Nat Rev Microbiol 2: 217-230.
    • (2004) Nat Rev Microbiol , vol.2 , pp. 217-230
    • Bazylinski, D.A.1    Frankel, R.B.2
  • 10
    • 0344406194 scopus 로고    scopus 로고
    • In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes
    • Behrens, S., Rühland, C., Inacio, J., Huber, H., Fonseca, A., Spencer-Martins, I., etal. (2003) In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes. Appl Environ Microbiol 69: 1748-1758.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1748-1758
    • Behrens, S.1    Rühland, C.2    Inacio, J.3    Huber, H.4    Fonseca, A.5    Spencer-Martins, I.6
  • 11
    • 18744372402 scopus 로고    scopus 로고
    • Recovery of novel bacterial diversity from a forested wetland impacted by reject coal
    • Brofft, J.E., McArthur, J.V., and Shimkets, L.J. (2002) Recovery of novel bacterial diversity from a forested wetland impacted by reject coal. Environ Microbiol 4: 764-769.
    • (2002) Environ Microbiol , vol.4 , pp. 764-769
    • Brofft, J.E.1    McArthur, J.V.2    Shimkets, L.J.3
  • 12
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
    • Cole, J.R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R.J., etal. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5    Farris, R.J.6
  • 13
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set
    • Daims, H., Bruhl, A., Amann, R., Schleifer, K.H., and Wagner, M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Bruhl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 14
    • 0035146134 scopus 로고    scopus 로고
    • Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms
    • Derakshani, M., Lukow, T., and Liesack, W. (2001) Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms. Appl Environ Microbiol 67: 623-631.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 623-631
    • Derakshani, M.1    Lukow, T.2    Liesack, W.3
  • 15
    • 34547728083 scopus 로고    scopus 로고
    • Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma
    • Elshahed, M.S., Youssef, N.H., Luo, Q., Najar, F.Z., Roe, B.A., Sisk, T.M., etal. (2007) Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma. Appl Environ Microbiol 73: 4707-4716.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4707-4716
    • Elshahed, M.S.1    Youssef, N.H.2    Luo, Q.3    Najar, F.Z.4    Roe, B.A.5    Sisk, T.M.6
  • 17
    • 57349106491 scopus 로고    scopus 로고
    • Magnetotactic bacteria and magnetosomes
    • Faivre, D., and Schüler, D. (2008) Magnetotactic bacteria and magnetosomes. Chem Rev 108: 4875-4898.
    • (2008) Chem Rev , vol.108 , pp. 4875-4898
    • Faivre, D.1    Schüler, D.2
  • 18
    • 18444379962 scopus 로고    scopus 로고
    • Combined approach for characterization of uncultivated magnetotactic bacteria from various aquatic environments
    • Flies, C.B., Peplies, J., and Schüler, D. (2005a) Combined approach for characterization of uncultivated magnetotactic bacteria from various aquatic environments. Appl Environ Microbiol 71: 2723-2731.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2723-2731
    • Flies, C.B.1    Peplies, J.2    Schüler, D.3
  • 19
    • 15244339397 scopus 로고    scopus 로고
    • Diversity and vertical distribution of magnetotactic bacteria along chemical gradients in freshwater microcosms
    • Flies, C.B., Jonkers, H.M., de Beer, D., Bosselmann, K., Böttcher, M.E., and Schüler, D. (2005b) Diversity and vertical distribution of magnetotactic bacteria along chemical gradients in freshwater microcosms. FEMS Microbiol Ecol 52: 185-195.
    • (2005) FEMS Microbiol Ecol , vol.52 , pp. 185-195
    • Flies, C.B.1    Jonkers, H.M.2    de Beer, D.3    Bosselmann, K.4    Böttcher, M.E.5    Schüler, D.6
  • 21
    • 31444443960 scopus 로고    scopus 로고
    • Dynamic analysis of a genomic island in Magnetospirillum sp. strain AMB-1 reveals how magnetosome synthesis developed
    • Fukuda, Y., Okamura, Y., Takeyama, H., and Matsunaga, T. (2006) Dynamic analysis of a genomic island in Magnetospirillum sp. strain AMB-1 reveals how magnetosome synthesis developed. FEBS Lett 580: 801-812.
    • (2006) FEBS Lett , vol.580 , pp. 801-812
    • Fukuda, Y.1    Okamura, Y.2    Takeyama, H.3    Matsunaga, T.4
  • 23
    • 0035486722 scopus 로고    scopus 로고
    • A large gene cluster encoding several magnetosome proteins is conserved in different species of magnetotactic bacteria
    • Grünberg, K., Wawer, C., Tebo, B.M., and Schüler, D. (2001) A large gene cluster encoding several magnetosome proteins is conserved in different species of magnetotactic bacteria. Appl Environ Microbiol 67: 4573-4582.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4573-4582
    • Grünberg, K.1    Wawer, C.2    Tebo, B.M.3    Schüler, D.4
  • 24
    • 1842592740 scopus 로고    scopus 로고
    • Biochemical and proteomic analysis of the magnetosome membrane in Magnetospirillum gryphiswaldense
    • Grünberg, K., Müller, E.C., Otto, A., Reszka, R., Linder, D., Kube, M., etal. (2004) Biochemical and proteomic analysis of the magnetosome membrane in Magnetospirillum gryphiswaldense. Appl Environ Microbiol 70: 1040-1050.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1040-1050
    • Grünberg, K.1    Müller, E.C.2    Otto, A.3    Reszka, R.4    Linder, D.5    Kube, M.6
  • 27
    • 77149141094 scopus 로고    scopus 로고
    • Prokaryote diversity in water environment of land-ocean ecotone of Zhuhai City
    • Huang, X.L., Chen, J.Y., Zhou, S.N., Xie, L.C., and Fu, C.S. (2010) Prokaryote diversity in water environment of land-ocean ecotone of Zhuhai City. Ying Yong Sheng Tai Xue Bao 21: 452-457.
    • (2010) Ying Yong Sheng Tai Xue Bao , vol.21 , pp. 452-457
    • Huang, X.L.1    Chen, J.Y.2    Zhou, S.N.3    Xie, L.C.4    Fu, C.S.5
  • 28
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
    • Huber, T., Faulkner, G., and Hugenholtz, P. (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 29
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., Pitulle, C., Hershberger, K.L., and Pace, N.R. (1998) Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180: 366-376.
    • (1998) J Bacteriol , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 32
    • 70349527943 scopus 로고    scopus 로고
    • Genomics, genetics, and cell biology of magnetosome formation
    • Jogler, C., and Schüler, D. (2009) Genomics, genetics, and cell biology of magnetosome formation. Annu Rev Microbiol 63: 501-521.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 501-521
    • Jogler, C.1    Schüler, D.2
  • 33
    • 65349149041 scopus 로고    scopus 로고
    • Comparative analysis of magnetosome gene clusters in magnetotactic bacteria provides further evidence for horizontal gene transfer
    • Jogler, C., Kube, M., Schübbe, S., Ullrich, S., Teeling, H., Bazylinski, D.A., etal. (2009a) Comparative analysis of magnetosome gene clusters in magnetotactic bacteria provides further evidence for horizontal gene transfer. Environ Microbiol 11: 1267-1277.
    • (2009) Environ Microbiol , vol.11 , pp. 1267-1277
    • Jogler, C.1    Kube, M.2    Schübbe, S.3    Ullrich, S.4    Teeling, H.5    Bazylinski, D.A.6
  • 34
    • 67149146239 scopus 로고    scopus 로고
    • Toward cloning of the magnetotactic metagenome: identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments
    • Jogler, C., Lin, W., Meyerdierks, A., Kube, M., Katzmann, E., Flies, C., etal. (2009b) Toward cloning of the magnetotactic metagenome: identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments. Appl Environ Microbiol 75: 3972-3979.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 3972-3979
    • Jogler, C.1    Lin, W.2    Meyerdierks, A.3    Kube, M.4    Katzmann, E.5    Flies, C.6
  • 35
    • 77956285226 scopus 로고    scopus 로고
    • Cultivation-independent characterization of 'Candidatus Magnetobacterium bavaricum' via ultrastructural, geochemical, ecological and metagenomic methods
    • Jogler, C., Niebler, M., Lin, W., Kube, M., Wanner, G., Kolinko, S., etal. (2010) Cultivation-independent characterization of 'Candidatus Magnetobacterium bavaricum' via ultrastructural, geochemical, ecological and metagenomic methods. Environ Microbiol 12: 2466-2478.
    • (2010) Environ Microbiol , vol.12 , pp. 2466-2478
    • Jogler, C.1    Niebler, M.2    Lin, W.3    Kube, M.4    Wanner, G.5    Kolinko, S.6
  • 36
    • 79551629086 scopus 로고    scopus 로고
    • Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum
    • Jogler, C., Wanner, G., Kolinko, S., Niebler, M., Amann, R., Petersen, N., etal. (2011) Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum. Proc Natl Acad Sci USA 108: 1134-1139.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 1134-1139
    • Jogler, C.1    Wanner, G.2    Kolinko, S.3    Niebler, M.4    Amann, R.5    Petersen, N.6
  • 37
    • 77954009237 scopus 로고    scopus 로고
    • Loss of the actin-like protein MamK has pleiotropic effects on magnetosome formation and chain assembly in Magnetospirillum gryphiswaldense
    • Katzmann, E., Scheffel, A., Gruska, M., Plitzko, J.M., and Schüler, D. (2010) Loss of the actin-like protein MamK has pleiotropic effects on magnetosome formation and chain assembly in Magnetospirillum gryphiswaldense. Mol Microbiol 77: 208-224.
    • (2010) Mol Microbiol , vol.77 , pp. 208-224
    • Katzmann, E.1    Scheffel, A.2    Gruska, M.3    Plitzko, J.M.4    Schüler, D.5
  • 38
    • 0028925150 scopus 로고
    • Phylogenetic analysis of a novel sulfate-reducing magnetic bacterium, RS-1, demonstrates its membership of the delta-Proteobacteria
    • Kawaguchi, R., Burgess, J.G., Sakaguchi, T., Takeyama, H., Thornhill, R.H., and Matsunaga, T. (1995) Phylogenetic analysis of a novel sulfate-reducing magnetic bacterium, RS-1, demonstrates its membership of the delta-Proteobacteria. FEMS Microbiol Lett 126: 277-282.
    • (1995) FEMS Microbiol Lett , vol.126 , pp. 277-282
    • Kawaguchi, R.1    Burgess, J.G.2    Sakaguchi, T.3    Takeyama, H.4    Thornhill, R.H.5    Matsunaga, T.6
  • 39
    • 0001857117 scopus 로고
    • 16S/23S sequencing
    • Stackebrandt, E., and Chichster, M.G. (eds). New York, USA: Wiley & Sons
    • Lane, D.J. (1991) 16S/23S sequencing. In Nucleic Acid Techniques in Bacterial Systematics. Stackebrandt, E., and Chichster, M.G. (eds). New York, USA: Wiley & Sons, pp. 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 41
    • 80051944877 scopus 로고    scopus 로고
    • Isolation of obligately alkaliphilic magnetotactic bacteria from extremely alkaline environments
    • Lefèvre, C.T., Frankel, R.B., Posfai, M., Prozorov, T., and Bazylinski, D.A. (2011a) Isolation of obligately alkaliphilic magnetotactic bacteria from extremely alkaline environments. Environ Microbiol 13: 2342-2350.
    • (2011) Environ Microbiol , vol.13 , pp. 2342-2350
    • Lefèvre, C.T.1    Frankel, R.B.2    Posfai, M.3    Prozorov, T.4    Bazylinski, D.A.5
  • 42
    • 84857459460 scopus 로고    scopus 로고
    • Novel magnetite-producing magnetotactic bacteria belonging to the Gammaproteobacteria
    • (Epub ahead of print).
    • Lefèvre, C.T., Viloria, N., Schmidt, M.L., Posfai, M., Frankel, R.B., and Bazylinski, D.A. (2011b) Novel magnetite-producing magnetotactic bacteria belonging to the Gammaproteobacteria. ISME J (Epub ahead of print).
    • (2011) ISME J
    • Lefèvre, C.T.1    Viloria, N.2    Schmidt, M.L.3    Posfai, M.4    Frankel, R.B.5    Bazylinski, D.A.6
  • 43
    • 79551499866 scopus 로고    scopus 로고
    • Culture-independent characterization of a novel, uncultivated magnetotactic member of the Nitrospirae phylum
    • Lefèvre, C.T., Frankel, R.B., Abreu, F., Lins, U., and Bazylinski, D.A. (2011c) Culture-independent characterization of a novel, uncultivated magnetotactic member of the Nitrospirae phylum. Environ Microbiol 13: 538-549.
    • (2011) Environ Microbiol , vol.13 , pp. 538-549
    • Lefèvre, C.T.1    Frankel, R.B.2    Abreu, F.3    Lins, U.4    Bazylinski, D.A.5
  • 44
    • 33947386687 scopus 로고    scopus 로고
    • Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France)
    • Lehours, A.C., Evans, P., Bardot, C., Joblin, K., and Gerard, F. (2007) Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France). Appl Environ Microbiol 73: 2016-2019.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2016-2019
    • Lehours, A.C.1    Evans, P.2    Bardot, C.3    Joblin, K.4    Gerard, F.5
  • 45
    • 61349110165 scopus 로고    scopus 로고
    • Bacterial and archaeal diversity in surface sediment from the south slope of the South China Sea
    • Li, T., and Wang, P. (2008) Bacterial and archaeal diversity in surface sediment from the south slope of the South China Sea. Wei Sheng Wu Xue Bao 48: 323-329.
    • (2008) Wei Sheng Wu Xue Bao , vol.48 , pp. 323-329
    • Li, T.1    Wang, P.2
  • 46
    • 0028077780 scopus 로고
    • Phylogenetic analysis of five strains of Gram-negative, obligately anaerobic, sulfur-reducing bacteria: Description of Desulfuromuea gen. nov., including the species D. kysingli sp. nov., D. bakii sp. nov. and D. succinoxidans sp. nov
    • Liesack, W., and Finster, K. (1994) Phylogenetic analysis of five strains of Gram-negative, obligately anaerobic, sulfur-reducing bacteria: Description of Desulfuromuea gen. nov., including the species D. kysingli sp. nov., D. bakii sp. nov. and D. succinoxidans sp. nov. Int J Syst Bacteriol 44: 753-758.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 753-758
    • Liesack, W.1    Finster, K.2
  • 47
    • 67149119809 scopus 로고    scopus 로고
    • Diversity analysis of magnetotactic bacteria in Lake Miyun, northern China, by restriction fragment length polymorphism
    • Lin, W., Li, J., Schüler, D., Jogler, C., and Pan, Y. (2009) Diversity analysis of magnetotactic bacteria in Lake Miyun, northern China, by restriction fragment length polymorphism. Syst Appl Microbiol 32: 342-350.
    • (2009) Syst Appl Microbiol , vol.32 , pp. 342-350
    • Lin, W.1    Li, J.2    Schüler, D.3    Jogler, C.4    Pan, Y.5
  • 48
    • 79251646697 scopus 로고    scopus 로고
    • Metagenomic analysis reveals unexpected subgenomic diversity of magnetotactic bacteria within the phylum Nitrospirae
    • Lin, W., Jogler, C., Schüler, D., and Pan, Y. (2011) Metagenomic analysis reveals unexpected subgenomic diversity of magnetotactic bacteria within the phylum Nitrospirae. Appl Environ Microbiol 77: 323-326.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 323-326
    • Lin, W.1    Jogler, C.2    Schüler, D.3    Pan, Y.4
  • 49
    • 51649116822 scopus 로고    scopus 로고
    • probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity
    • Loy, A., Arnold, R., Tischler, P., Rattei, T., Wagner, M., and Horn, M. (2008) probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity. Environ Microbiol 10: 2894-2898.
    • (2008) Environ Microbiol , vol.10 , pp. 2894-2898
    • Loy, A.1    Arnold, R.2    Tischler, P.3    Rattei, T.4    Wagner, M.5    Horn, M.6
  • 50
    • 77956874467 scopus 로고    scopus 로고
    • Molecular Phylogeny of Microorganisms: is rRNA Still a Useful Marker?
    • Oren, A., and Papke, R.T. (eds). Norfolk: Caister Academic Press
    • Ludwig, W. (2010) Molecular Phylogeny of Microorganisms: is rRNA Still a Useful Marker? Molecular Phylogeny of Microorganisms. Oren, A., and Papke, R.T. (eds). Norfolk: Caister Academic Press, pp. 65-84.
    • (2010) Molecular Phylogeny of Microorganisms , pp. 65-84
    • Ludwig, W.1
  • 51
    • 0027998116 scopus 로고
    • Bacterial phylogeny based on 16S and 23S rRNA sequence analysis
    • Ludwig, W., and Schleifer, K.H. (1994) Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol Rev 15: 155-173.
    • (1994) FEMS Microbiol Rev , vol.15 , pp. 155-173
    • Ludwig, W.1    Schleifer, K.H.2
  • 54
    • 0035318078 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin
    • Madrid, V.M., Taylor, G.T., Scranton, M.I., and Chistoserdov, A.Y. (2001) Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin. Appl Environ Microbiol 67: 1663-1674.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1663-1674
    • Madrid, V.M.1    Taylor, G.T.2    Scranton, M.I.3    Chistoserdov, A.Y.4
  • 55
    • 77950442198 scopus 로고    scopus 로고
    • Comprehensive genetic dissection of the magnetosome gene island reveals the step-wise assembly of a prokaryotic organelle
    • Murat, D., Quinlan, A., Vali, H., and Komeili, A. (2010) Comprehensive genetic dissection of the magnetosome gene island reveals the step-wise assembly of a prokaryotic organelle. Proc Natl Acad Sci USA 107: 5593-5598.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 5593-5598
    • Murat, D.1    Quinlan, A.2    Vali, H.3    Komeili, A.4
  • 56
    • 84876677487 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
    • Pernthaler, J., Glöckner, F.O., Schönhuber, W., and Amann, R. (2001) Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes.
    • (2001)
    • Pernthaler, J.1    Glöckner, F.O.2    Schönhuber, W.3    Amann, R.4
  • 57
    • 42549084353 scopus 로고    scopus 로고
    • Characterization and evolution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and phylogenetic comparison with rRNA genes
    • Pilhofer, M., Rappl, K., Eckl, C., Bauer, A.P., Ludwig, W., Schleifer, K.H., and Petroni, G. (2008) Characterization and evolution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and phylogenetic comparison with rRNA genes. J Bacteriol 190: 3192-3202.
    • (2008) J Bacteriol , vol.190 , pp. 3192-3202
    • Pilhofer, M.1    Rappl, K.2    Eckl, C.3    Bauer, A.P.4    Ludwig, W.5    Schleifer, K.H.6    Petroni, G.7
  • 58
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., and Glöckner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 59
    • 34347392111 scopus 로고    scopus 로고
    • Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function
    • Richter, M., Kube, M., Bazylinski, D.A., Lombardot, T., Glockner, F.O., Reinhardt, R., and Schüler, D. (2007) Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function. J Bacteriol 189: 4899-4910.
    • (2007) J Bacteriol , vol.189 , pp. 4899-4910
    • Richter, M.1    Kube, M.2    Bazylinski, D.A.3    Lombardot, T.4    Glockner, F.O.5    Reinhardt, R.6    Schüler, D.7
  • 60
    • 0035491310 scopus 로고    scopus 로고
    • Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer
    • Röling, W.F., van Breukelen, B.M., Braster, M., Lin, B., and van Verseveld, H.W. (2001) Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer. Appl Environ Microbiol 67: 4619-4629.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4619-4629
    • Röling, W.F.1    van Breukelen, B.M.2    Braster, M.3    Lin, B.4    van Verseveld, H.W.5
  • 61
    • 0043238446 scopus 로고
    • A simple method of staining bacterial flagella
    • Ryu, E. (1937) A simple method of staining bacterial flagella. Kitasato Arch Exp Med 14: 218-219.
    • (1937) Kitasato Arch Exp Med , vol.14 , pp. 218-219
    • Ryu, E.1
  • 62
    • 0036153574 scopus 로고    scopus 로고
    • Desulfovibrio magneticus sp. nov., a novel sulfate-reducing bacterium that produces intracellular single-domain-sized magnetite particles
    • Sakaguchi, T., Arakaki, A., and Matsunaga, T. (2002) Desulfovibrio magneticus sp. nov., a novel sulfate-reducing bacterium that produces intracellular single-domain-sized magnetite particles. Int J Syst Evol Microbiol 52: 215-221.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 215-221
    • Sakaguchi, T.1    Arakaki, A.2    Matsunaga, T.3
  • 63
    • 0021831306 scopus 로고
    • Fermentation of acetylene by an obligate anaerobe, Pelobacter acetylenicus sp. nov
    • Schink, B. (1985) Fermentation of acetylene by an obligate anaerobe, Pelobacter acetylenicus sp. nov. Arch Microbiol 142: 295-301.
    • (1985) Arch Microbiol , vol.142 , pp. 295-301
    • Schink, B.1
  • 64
    • 0025994679 scopus 로고
    • The genus Magnetospirillum gen. nov., description of Magnetospirillum gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov
    • Schleifer, K.H., Schüler, D., Spring, S., Weizenegger, M., Amann, R., Ludwig, W., and Köhler, M. (1991) The genus Magnetospirillum gen. nov., description of Magnetospirillum gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov. Syst Appl Microbiol 14: 379-385.
    • (1991) Syst Appl Microbiol , vol.14 , pp. 379-385
    • Schleifer, K.H.1    Schüler, D.2    Spring, S.3    Weizenegger, M.4    Amann, R.5    Ludwig, W.6    Köhler, M.7
  • 65
    • 17344383176 scopus 로고    scopus 로고
    • Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome island
    • Schübbe, S., Kube, M., Scheffel, A., Wawer, C., Heyen, U., Meyerdierks, A., etal. (2003) Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome island. J Bacteriol 185: 5779-5790.
    • (2003) J Bacteriol , vol.185 , pp. 5779-5790
    • Schübbe, S.1    Kube, M.2    Scheffel, A.3    Wawer, C.4    Heyen, U.5    Meyerdierks, A.6
  • 66
    • 84876693160 scopus 로고
    • Isolierung und Charakterisierung magnetischer Bakterien - Untersuchungen zur Magnetitbiomineralisation in Magnetospirillum gryphiswaldense. Munich
    • Schüler, D. (1994) Isolierung und Charakterisierung magnetischer Bakterien - Untersuchungen zur Magnetitbiomineralisation in Magnetospirillum gryphiswaldense. Munich.
    • (1994)
    • Schüler, D.1
  • 67
    • 44849121823 scopus 로고    scopus 로고
    • Techniques for studying uncultured and cultured magnetotactic bacteria
    • Hurst, C.J., Crawford, R.L., Garland, J.L., Lipson, D.A., Mills, A.L., and Setzenbach, L.D. (eds). Washington DC, USA: ASM Press
    • Schüler, D., and Bazylinski, D.A. (2007) Techniques for studying uncultured and cultured magnetotactic bacteria. In Manual of Environmental Microbiology. Hurst, C.J., Crawford, R.L., Garland, J.L., Lipson, D.A., Mills, A.L., and Setzenbach, L.D. (eds). Washington DC, USA: ASM Press, pp. 1129-1138.
    • (2007) Manual of Environmental Microbiology. , pp. 1129-1138
    • Schüler, D.1    Bazylinski, D.A.2
  • 68
    • 0040992757 scopus 로고    scopus 로고
    • Improved technique for the isolation of magnetotactic spirilla from a freshwater sediment and their phylogenetic characterization
    • Schüler, D., Spring, S., and Bazylinski, D.A. (1999) Improved technique for the isolation of magnetotactic spirilla from a freshwater sediment and their phylogenetic characterization. Syst Appl Microbiol 22: 466-471.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 466-471
    • Schüler, D.1    Spring, S.2    Bazylinski, D.A.3
  • 69
    • 0027338307 scopus 로고
    • Dominating role of an unusual magnetotactic bacterium in the microaerobic zone of a freshwater sediment
    • Spring, S., Amann, R., Ludwig, W., Schleifer, K.H., van Gemerden, H., and Petersen, N. (1993) Dominating role of an unusual magnetotactic bacterium in the microaerobic zone of a freshwater sediment. Appl Environ Microbiol 59: 2397-2403.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 2397-2403
    • Spring, S.1    Amann, R.2    Ludwig, W.3    Schleifer, K.H.4    van Gemerden, H.5    Petersen, N.6
  • 70
    • 0028944762 scopus 로고
    • Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of Proteobacteria
    • Spring, S., Amann, R., Schleifer, K.H., Schüler, D., Poralla, K., and Petersen, N. (1994) Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of Proteobacteria. Syst Appl Microbiol 17: 501-508.
    • (1994) Syst Appl Microbiol , vol.17 , pp. 501-508
    • Spring, S.1    Amann, R.2    Schleifer, K.H.3    Schüler, D.4    Poralla, K.5    Petersen, N.6
  • 71
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 72
    • 0036205605 scopus 로고    scopus 로고
    • Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities
    • Teske, A., Hinrichs, K.U., Edgcomb, V., de Vera Gomez, A., Kysela, D., Sylva, S.P., etal. (2002) Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68: 1994-2007.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1994-2007
    • Teske, A.1    Hinrichs, K.U.2    Edgcomb, V.3    de Vera Gomez, A.4    Kysela, D.5    Sylva, S.P.6
  • 73
    • 27144485750 scopus 로고    scopus 로고
    • A hypervariable 130-kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island which undergoes frequent rearrangements during stationary growth
    • Ullrich, S., Kube, M., Schübbe, S., Reinhardt, R., and Schüler, D. (2005) A hypervariable 130-kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island which undergoes frequent rearrangements during stationary growth. J Bacteriol 187: 7176-7184.
    • (2005) J Bacteriol , vol.187 , pp. 7176-7184
    • Ullrich, S.1    Kube, M.2    Schübbe, S.3    Reinhardt, R.4    Schüler, D.5
  • 74
    • 0002900194 scopus 로고
    • Observations of magnetosome organization, surface structure, and iron biomineralization of undescribed magnetic bacteria
    • Frankel, R.B., and Blakemore, R.P. (eds). New York and London: Plenum Press
    • Vali, H., and Kirschvink, J.L. (1991) Observations of magnetosome organization, surface structure, and iron biomineralization of undescribed magnetic bacteria. In Iron Biominerals. Frankel, R.B., and Blakemore, R.P. (eds). New York and London: Plenum Press, pp. 97-116.
    • (1991) Iron Biominerals , pp. 97-116
    • Vali, H.1    Kirschvink, J.L.2
  • 75
    • 0027182309 scopus 로고
    • Amplification and sequencing of variable regions in bacterial 23S ribosomal RNA genes with conserved primer sequences
    • Van Camp, G., Chapelle, S., and De Wachter, R. (1993) Amplification and sequencing of variable regions in bacterial 23S ribosomal RNA genes with conserved primer sequences. Curr Microbiol 27: 147-151.
    • (1993) Curr Microbiol , vol.27 , pp. 147-151
    • Van Camp, G.1    Chapelle, S.2    De Wachter, R.3
  • 76
    • 33744927902 scopus 로고    scopus 로고
    • The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance
    • Wagner, M., and Horn, M. (2006) The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr Opin Biotechnol 17: 241-249.
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 241-249
    • Wagner, M.1    Horn, M.2
  • 77
    • 66649095354 scopus 로고    scopus 로고
    • Ultrastructure, tactic behaviour and potential for sulfate reduction of a novel multicellular magnetotactic prokaryote from North Sea sediments
    • Wenter, R., Wanner, G., Schüler, D., and Overmann, J. (2009) Ultrastructure, tactic behaviour and potential for sulfate reduction of a novel multicellular magnetotactic prokaryote from North Sea sediments. Environ Microbiol 11: 1493-1505.
    • (2009) Environ Microbiol , vol.11 , pp. 1493-1505
    • Wenter, R.1    Wanner, G.2    Schüler, D.3    Overmann, J.4
  • 78
    • 0023103376 scopus 로고
    • A 'capillary racetrack' method for isolation of magnetotactic bacteria
    • Wolfe, R.S., Thauer, R.K., and Pfennig, N. (1987) A 'capillary racetrack' method for isolation of magnetotactic bacteria. FEMS Microbiol Ecol 45: 31-35.
    • (1987) FEMS Microbiol Ecol , vol.45 , pp. 31-35
    • Wolfe, R.S.1    Thauer, R.K.2    Pfennig, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.