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Volumn 28, Issue 6, 2016, Pages 1279-1296

The proteasome stress regulon is controlled by a pair of NAC transcription factors in arabidopsis

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; ATP DEPENDENT 26S PROTEASE; BENZYLOXYCARBONYLLEUCYL-LEUCYL-LEUCINE ALDEHYDE; BORTEZOMIB; LEUPEPTIN; PROTEASOME; PROTEIN BINDING; TRANSCRIPTION FACTOR;

EID: 84978100340     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.15.01022     Document Type: Article
Times cited : (68)

References (80)
  • 1
    • 1542548233 scopus 로고    scopus 로고
    • T-DNA mutagenesis in Arabidopsis
    • Alonso, J.M., and Stepanova, A.N. (2003). T-DNA mutagenesis in Arabidopsis. Methods Mol. Biol. 236: 177-188.
    • (2003) Methods Mol. Biol. , vol.236 , pp. 177-188
    • Alonso, J.M.1    Stepanova, A.N.2
  • 2
    • 84890204277 scopus 로고    scopus 로고
    • Protein quality control and elimination of protein waste: The role of the ubiquitin-proteasome system
    • Amm, I., Sommer, T., and Wolf, D.H. (2014). Protein quality control and elimination of protein waste: the role of the ubiquitin-proteasome system. Biochim. Biophys. Acta 1843: 182-196.
    • (2014) Biochim. Biophys. Acta , vol.1843 , pp. 182-196
    • Amm, I.1    Sommer, T.2    Wolf, D.H.3
  • 3
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq: A Python framework to work with high-throughput sequencing data
    • Anders, S., Pyl, P.T., and Huber, W. (2015). HTSeq: a Python framework to work with high-throughput sequencing data. Bioinformatics 31: 166-169.
    • (2015) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 4
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader, G.D., and Hogue, C.W. (2003). An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4: 2.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 5
    • 33747823564 scopus 로고    scopus 로고
    • MEME: Discovering and analyzing DNA and protein sequence motifs
    • Bailey, T.L., Williams, N., Misleh, C., and Li, W.W. (2006). MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 43: W369-W373.
    • (2006) Nucleic Acids Res. , vol.43 , pp. W369-W373
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 6
    • 84894555108 scopus 로고    scopus 로고
    • Regulated protein turnover: Snapshots of the proteasome in action
    • Bhattacharyya, S., Yu, H., Mim, C., and Matouschek, A. (2014). Regulated protein turnover: snapshots of the proteasome in action. Nat. Rev. Mol. Cell Biol. 15: 122-133.
    • (2014) Nat. Rev. Mol. Cell Biol. , vol.15 , pp. 122-133
    • Bhattacharyya, S.1    Yu, H.2    Mim, C.3    Matouschek, A.4
  • 7
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger, A.M., Lohse, M., and Usadel, B. (2014). Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30: 2114-2120.
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 8
    • 77955485244 scopus 로고    scopus 로고
    • Affinity purification of the Arabidopsis 26S proteasome reveals a diverse array of plant proteolytic complexes
    • Book, A.J., Gladman, N.P., Lee, S.S., Scalf, M., Smith, L.M., and Vierstra, R.D. (2010). Affinity purification of the Arabidopsis 26S proteasome reveals a diverse array of plant proteolytic complexes. J. Biol. Chem. 285: 25554-25569.
    • (2010) J. Biol. Chem. , vol.285 , pp. 25554-25569
    • Book, A.J.1    Gladman, N.P.2    Lee, S.S.3    Scalf, M.4    Smith, L.M.5    Vierstra, R.D.6
  • 10
    • 0034955584 scopus 로고    scopus 로고
    • Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana
    • Chan, C.S., Guo, L., and Shih, M.C. (2001). Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana. Plant Mol. Biol. 46: 131-141.
    • (2001) Plant Mol. Biol. , vol.46 , pp. 131-141
    • Chan, C.S.1    Guo, L.2    Shih, M.C.3
  • 11
    • 84895926810 scopus 로고    scopus 로고
    • The TRANSPLANTA collection of Arabidopsis lines: A resource for functional analysis of transcription factors based on their conditional overexpression
    • Coego, A., Brizuela, E., Castillejo, P., Ruíz, S., Koncz, C., del Pozo, J.C., Piñeiro, M., Jarillo, J.A., Paz-Ares, J., and León, J.; TRANSPLANTA Consortium (2014). The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J. 77: 944-953.
    • (2014) Plant J. , vol.77 , pp. 944-953
    • Coego, A.1    Brizuela, E.2    Castillejo, P.3    Ruíz, S.4    Koncz, C.5    del Pozo, J.C.6    Piñeiro, M.7    Jarillo, J.A.8    Paz-Ares, J.9    León, J.10
  • 12
    • 84890085638 scopus 로고    scopus 로고
    • Role of protein misfolding and proteostasis deficiency in protein misfolding diseases and aging
    • Cuanalo-Contreras, K., Mukherjee, A., and Soto, C. (2013). Role of protein misfolding and proteostasis deficiency in protein misfolding diseases and aging. Int. J. Cell Biol. 2013: 638083.
    • (2013) Int. J. Cell Biol. , vol.2013 , pp. 638083
    • Cuanalo-Contreras, K.1    Mukherjee, A.2    Soto, C.3
  • 13
    • 84886458742 scopus 로고    scopus 로고
    • The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis
    • De Clercq, I., et al. (2013). The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. Plant Cell 25: 3472-3490.
    • (2013) Plant Cell , vol.25 , pp. 3472-3490
    • De Clercq, I.1
  • 14
    • 35548937755 scopus 로고    scopus 로고
    • Biting the hand that feeds: Rpn4-dependent feedback regulation of proteasome function
    • Dohmen, R.J., Willers, I., and Marques, A.J. (2007). Biting the hand that feeds: Rpn4-dependent feedback regulation of proteasome function. Biochim. Biophys. Acta 1773: 1599-1604.
    • (2007) Biochim. Biophys. Acta , vol.1773 , pp. 1599-1604
    • Dohmen, R.J.1    Willers, I.2    Marques, A.J.3
  • 15
    • 77950363988 scopus 로고    scopus 로고
    • The RAD23 family provides an essential connection between the 26S proteasome and ubiquitylated proteins in Arabidopsis
    • Farmer, L.M., Book, A.J., Lee, K.H., Lin, Y.L., Fu, H., and Vierstra, R.D. (2010). The RAD23 family provides an essential connection between the 26S proteasome and ubiquitylated proteins in Arabidopsis. Plant Cell 22: 124-142.
    • (2010) Plant Cell , vol.22 , pp. 124-142
    • Farmer, L.M.1    Book, A.J.2    Lee, K.H.3    Lin, Y.L.4    Fu, H.5    Vierstra, R.D.6
  • 16
    • 75149172775 scopus 로고    scopus 로고
    • Cross-species divergence of the major recognition pathways of ubiquitylated substrates for ubiquitin/26S proteasome-mediated proteolysis
    • Fatimababy, A.S., Lin, Y.L., Usharani, R., Radjacommare, R., Wang, H.T., Tsai, H.L., Lee, Y., and Fu, H. (2010). Cross-species divergence of the major recognition pathways of ubiquitylated substrates for ubiquitin/26S proteasome-mediated proteolysis. FEBS J. 277: 796-816.
    • (2010) FEBS J. , vol.277 , pp. 796-816
    • Fatimababy, A.S.1    Lin, Y.L.2    Usharani, R.3    Radjacommare, R.4    Wang, H.T.5    Tsai, H.L.6    Lee, Y.7    Fu, H.8
  • 17
    • 65649115267 scopus 로고    scopus 로고
    • Recognition and processing of ubiquitin-protein conjugates by the proteasome
    • Finley, D. (2009). Recognition and processing of ubiquitin-protein conjugates by the proteasome. Annu. Rev. Biochem. 78: 477-513.
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 477-513
    • Finley, D.1
  • 18
    • 64749106137 scopus 로고    scopus 로고
    • The Arabidopsis proteasome RPT5 subunits are essential for gametophyte development and show accession-dependent redundancy
    • Gallois, J.L., Guyon-Debast, A., Lécureuil, A., Vezon, D., Carpentier, V., Bonhomme, S., and Guerche, P. (2009). The Arabidopsis proteasome RPT5 subunits are essential for gametophyte development and show accession-dependent redundancy. Plant Cell 21: 442-459.
    • (2009) Plant Cell , vol.21 , pp. 442-459
    • Gallois, J.L.1    Guyon-Debast, A.2    Lécureuil, A.3    Vezon, D.4    Carpentier, V.5    Bonhomme, S.6    Guerche, P.7
  • 19
    • 82355191640 scopus 로고    scopus 로고
    • Enhanced Y1H assays for Arabidopsis
    • Gaudinier, A., et al. (2011). Enhanced Y1H assays for Arabidopsis. Nat. Methods 8: 1053-1055.
    • (2011) Nat. Methods , vol.8 , pp. 1053-1055
    • Gaudinier, A.1
  • 22
    • 84856111924 scopus 로고    scopus 로고
    • The unfolded protein response: Controlling cell fate decisions under ER stress and beyond
    • Hetz, C. (2012). The unfolded protein response: controlling cell fate decisions under ER stress and beyond. Nat. Rev. Mol. Cell Biol. 13: 89-102.
    • (2012) Nat. Rev. Mol. Cell Biol. , vol.13 , pp. 89-102
    • Hetz, C.1
  • 23
    • 84906794886 scopus 로고    scopus 로고
    • Proteostasis impairment in protein-misfolding and -aggregation diseases
    • Hipp, M.S., Park, S.H., and Hartl, F.U. (2014). Proteostasis impairment in protein-misfolding and -aggregation diseases. Trends Cell Biol. 24: 506-514.
    • (2014) Trends Cell Biol. , vol.24 , pp. 506-514
    • Hipp, M.S.1    Park, S.H.2    Hartl, F.U.3
  • 24
    • 84877341291 scopus 로고    scopus 로고
    • Endoplasmic reticulum stress responses in plants
    • Howell, S.H. (2013). Endoplasmic reticulum stress responses in plants. Annu. Rev. Plant Biol. 64: 477-499.
    • (2013) Annu. Rev. Plant Biol. , vol.64 , pp. 477-499
    • Howell, S.H.1
  • 25
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, W., Sherman, B.T., and Lempicki, R.A. (2009). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4: 44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 26
    • 0347859216 scopus 로고    scopus 로고
    • Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data
    • Hudson, M.E., and Quail, P.H. (2003). Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data. Plant Physiol. 133: 1605-1616.
    • (2003) Plant Physiol. , vol.133 , pp. 1605-1616
    • Hudson, M.E.1    Quail, P.H.2
  • 28
    • 84955242756 scopus 로고    scopus 로고
    • Ubiquitin-dependent and independent signals in selective autophagy
    • Khaminets, A., Behl, C., and Dikic, I. (2016). Ubiquitin-dependent and independent signals in selective autophagy. Trends Cell Biol. 26: 6-16.
    • (2016) Trends Cell Biol. , vol.26 , pp. 6-16
    • Khaminets, A.1    Behl, C.2    Dikic, I.3
  • 29
    • 33846673070 scopus 로고    scopus 로고
    • Exploring membrane-associated NAC transcription factors in Arabidopsis: Implications for membrane biology in genome regulation
    • Kim, S.Y., Kim, S.G., Kim, Y.S., Seo, P.J., Bae, M., Yoon, H.K., and Park, C.M. (2007). Exploring membrane-associated NAC transcription factors in Arabidopsis: implications for membrane biology in genome regulation. Nucleic Acids Res. 35: 203-213.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 203-213
    • Kim, S.Y.1    Kim, S.G.2    Kim, Y.S.3    Seo, P.J.4    Bae, M.5    Yoon, H.K.6    Park, C.M.7
  • 31
    • 33845785970 scopus 로고    scopus 로고
    • A membrane-bound NAC transcription factor regulates cell division in Arabidopsis
    • Kim, Y.S., Kim, S.G., Park, J.E., Park, H.Y., Lim, M.H., Chua, N.H., and Park, C.M. (2006). A membrane-bound NAC transcription factor regulates cell division in Arabidopsis. Plant Cell 18: 3132-3144.
    • (2006) Plant Cell , vol.18 , pp. 3132-3144
    • Kim, Y.S.1    Kim, S.G.2    Park, J.E.3    Park, H.Y.4    Lim, M.H.5    Chua, N.H.6    Park, C.M.7
  • 32
    • 84856373151 scopus 로고    scopus 로고
    • Proteasome inhibitors: An expanding army attacking a unique target
    • Kisselev, A.F., van der Linden, W.A., and Overkleeft, H.S. (2012). Proteasome inhibitors: an expanding army attacking a unique target. Chem. Biol. 19: 99-115.
    • (2012) Chem. Biol. , vol.19 , pp. 99-115
    • Kisselev, A.F.1    van der Linden, W.A.2    Overkleeft, H.S.3
  • 33
    • 77956410115 scopus 로고    scopus 로고
    • Selective autophagy: Ubiquitin-mediated recognition and beyond
    • Kraft, C., Peter, M., and Hofmann, K. (2010). Selective autophagy: ubiquitin-mediated recognition and beyond. Nat. Cell Biol. 12: 836-841.
    • (2010) Nat. Cell Biol. , vol.12 , pp. 836-841
    • Kraft, C.1    Peter, M.2    Hofmann, K.3
  • 34
    • 37249080675 scopus 로고    scopus 로고
    • 26S proteasome regulatory particle mutants have increased oxidative stress tolerance
    • Kurepa, J., Toh-e, A., and Smalle, J.A. (2008). 26S proteasome regulatory particle mutants have increased oxidative stress tolerance. Plant J. 53: 102-114.
    • (2008) Plant J. , vol.53 , pp. 102-114
    • Kurepa, J.1    Toh-e, A.2    Smalle, J.A.3
  • 35
    • 66149141767 scopus 로고    scopus 로고
    • Loss of 26S proteasome function leads to increased cell size and decreased cell number in Arabidopsis shoot organs
    • Kurepa, J., Wang, S., Li, Y., Zaitlin, D., Pierce, A.J., and Smalle, J.A. (2009). Loss of 26S proteasome function leads to increased cell size and decreased cell number in Arabidopsis shoot organs. Plant Physiol. 150: 178-189.
    • (2009) Plant Physiol. , vol.150 , pp. 178-189
    • Kurepa, J.1    Wang, S.2    Li, Y.3    Zaitlin, D.4    Pierce, A.J.5    Smalle, J.A.6
  • 36
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B., and Salzberg, S.L. (2012). Fast gapped-read alignment with Bowtie 2. Nat. Methods 9: 357-359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 37
    • 84863012234 scopus 로고    scopus 로고
    • The RPT2 subunit of the 26S proteasome directs complex assembly, histone dynamics, and gametophyte and sporophyte development in Arabidopsis
    • Lee, K.H., Minami, A., Marshall, R.S., Book, A.J., Farmer, L.M., Walker, J.M., and Vierstra, R.D. (2011). The RPT2 subunit of the 26S proteasome directs complex assembly, histone dynamics, and gametophyte and sporophyte development in Arabidopsis. Plant Cell 23: 4298-4317.
    • (2011) Plant Cell , vol.23 , pp. 4298-4317
    • Lee, K.H.1    Minami, A.2    Marshall, R.S.3    Book, A.J.4    Farmer, L.M.5    Walker, J.M.6    Vierstra, R.D.7
  • 38
    • 84861526258 scopus 로고    scopus 로고
    • A NAC transcription factor NTL4 promotes reactive oxygen species production during drought-induced leaf senescence in Arabidopsis
    • Lee, S., Seo, P.J., Lee, H.-J., and Park, C.-M. (2012). A NAC transcription factor NTL4 promotes reactive oxygen species production during drought-induced leaf senescence in Arabidopsis. Plant J. 70: 831-844.
    • (2012) Plant J. , vol.70 , pp. 831-844
    • Lee, S.1    Seo, P.J.2    Lee, H.-J.3    Park, C.-M.4
  • 39
    • 84904917150 scopus 로고    scopus 로고
    • The Arabidopsis NAC transcription factor NTL4 participates in a positive feedback loop that induces programmed cell death under heat stress conditions
    • Lee, S., Lee, H.-J., Huh, S.U., Paek, K.-H., Ha, J.-H., and Park, C.-M. (2014). The Arabidopsis NAC transcription factor NTL4 participates in a positive feedback loop that induces programmed cell death under heat stress conditions. Plant Sci. 227: 76-83.
    • (2014) Plant Sci. , vol.227 , pp. 76-83
    • Lee, S.1    Lee, H.-J.2    Huh, S.U.3    Paek, K.-H.4    Ha, J.-H.5    Park, C.-M.6
  • 40
    • 84865596150 scopus 로고    scopus 로고
    • Autophagy: A multifaceted intracellular system for bulk and selective recycling
    • Li, F., and Vierstra, R.D. (2012). Autophagy: a multifaceted intracellular system for bulk and selective recycling. Trends Plant Sci. 17: 526-537.
    • (2012) Trends Plant Sci. , vol.17 , pp. 526-537
    • Li, F.1    Vierstra, R.D.2
  • 41
    • 84897081288 scopus 로고    scopus 로고
    • AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis
    • Li, F., Chung, T., and Vierstra, R.D. (2014). AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis. Plant Cell 26: 788-807.
    • (2014) Plant Cell , vol.26 , pp. 788-807
    • Li, F.1    Chung, T.2    Vierstra, R.D.3
  • 42
    • 84898721319 scopus 로고    scopus 로고
    • A positive feedback loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties
    • Lin, M.Y., Chai, K.H., Ko, S.S., Kuang, L.Y., Lur, H.S., and Charng, Y.Y. (2014). A positive feedback loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties. Plant Physiol. 164: 2045-2053.
    • (2014) Plant Physiol. , vol.164 , pp. 2045-2053
    • Lin, M.Y.1    Chai, K.H.2    Ko, S.S.3    Kuang, L.Y.4    Lur, H.S.5    Charng, Y.Y.6
  • 44
    • 18944392199 scopus 로고    scopus 로고
    • Identification and characterization of a Drosophila proteasome regulatory network
    • Lundgren, J., Masson, P., Mirzaei, Z., and Young, P. (2005). Identification and characterization of a Drosophila proteasome regulatory network. Mol. Cell. Biol. 25: 4662-4675.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 4662-4675
    • Lundgren, J.1    Masson, P.2    Mirzaei, Z.3    Young, P.4
  • 45
    • 0033004441 scopus 로고    scopus 로고
    • Rpn4p acts as a transcription factor by binding to PACE, a nonamer box found upstream of 26S proteasomal and other genes in yeast
    • Mannhaupt, G., Schnall, R., Karpov, V., Vetter, I., and Feldmann, H. (1999). Rpn4p acts as a transcription factor by binding to PACE, a nonamer box found upstream of 26S proteasomal and other genes in yeast. FEBS Lett. 450: 27-34.
    • (1999) FEBS Lett. , vol.450 , pp. 27-34
    • Mannhaupt, G.1    Schnall, R.2    Karpov, V.3    Vetter, I.4    Feldmann, H.5
  • 46
    • 84937574462 scopus 로고    scopus 로고
    • Autophagic degradation of the 26S proteasome is mediated by the dual ATG8/ubiquitin receptor RPN10 in Arabidopsis
    • Marshall, R.S., Li, F., Gemperline, D.C., Book, A.J., and Vierstra, R.D. (2015). Autophagic degradation of the 26S proteasome is mediated by the dual ATG8/ubiquitin receptor RPN10 in Arabidopsis. Mol. Cell 58: 1053-1066.
    • (2015) Mol. Cell , vol.58 , pp. 1053-1066
    • Marshall, R.S.1    Li, F.2    Gemperline, D.C.3    Book, A.J.4    Vierstra, R.D.5
  • 47
    • 0037821846 scopus 로고    scopus 로고
    • Inhibition of proteasome activity induces concerted expression of proteasome genes and de novo formation of mammalian proteasomes
    • Meiners, S., Heyken, D., Weller, A., Ludwig, A., Stangl, K., Kloetzel, P.M., and Krüger, E. (2003). Inhibition of proteasome activity induces concerted expression of proteasome genes and de novo formation of mammalian proteasomes. J. Biol. Chem. 278: 21517-21525.
    • (2003) J. Biol. Chem. , vol.278 , pp. 21517-21525
    • Meiners, S.1    Heyken, D.2    Weller, A.3    Ludwig, A.4    Stangl, K.5    Kloetzel, P.M.6    Krüger, E.7
  • 48
    • 44849094781 scopus 로고    scopus 로고
    • Proteotoxic stress and inducible chaperone networks in neurodegenerative disease and aging
    • Morimoto, R.I. (2008). Proteotoxic stress and inducible chaperone networks in neurodegenerative disease and aging. Genes Dev. 22: 1427-1438.
    • (2008) Genes Dev. , vol.22 , pp. 1427-1438
    • Morimoto, R.I.1
  • 49
    • 72649105744 scopus 로고    scopus 로고
    • Arabidopsis NAC transcription factor, ANAC078, regulates flavonoid biosynthesis under high-light
    • Morishita, T., Kojima, Y., Maruta, T., Nishizawa-Yokoi, A., Yabuta, Y., and Shigeoka, S. (2009). Arabidopsis NAC transcription factor, ANAC078, regulates flavonoid biosynthesis under high-light. Plant Cell Physiol. 50: 2210-2222.
    • (2009) Plant Cell Physiol. , vol.50 , pp. 2210-2222
    • Morishita, T.1    Kojima, Y.2    Maruta, T.3    Nishizawa-Yokoi, A.4    Yabuta, Y.5    Shigeoka, S.6
  • 52
    • 13744249762 scopus 로고    scopus 로고
    • NAC transcription factors: Structurally distinct, functionally diverse
    • Olsen, A.N., Ernst, H.A., Leggio, L.L., and Skriver, K. (2005a). NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 10: 79-87.
    • (2005) Trends Plant Sci. , vol.10 , pp. 79-87
    • Olsen, A.N.1    Ernst, H.A.2    Leggio, L.L.3    Skriver, K.4
  • 53
    • 23244465464 scopus 로고    scopus 로고
    • DNAbinding specificity and molecular functions of NAC transcription factors
    • Olsen, A.N., Ernst, H.A., Leggio, L.L., and Skriver, K. (2005b). DNAbinding specificity and molecular functions of NAC transcription factors. Plant Sci. 169: 785-797.
    • (2005) Plant Sci. , vol.169 , pp. 785-797
    • Olsen, A.N.1    Ernst, H.A.2    Leggio, L.L.3    Skriver, K.4
  • 54
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. (2001). A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29: e45.
    • (2001) Nucleic Acids Res. , vol.29 , pp. e45
    • Pfaffl, M.W.1
  • 55
    • 84898769387 scopus 로고    scopus 로고
    • p97-dependent retrotranslocation and proteolytic processing govern formation of active Nrf1 upon proteasome inhibition
    • Radhakrishnan, S.K., den Besten, W., and Deshaies, R.J. (2014). p97-dependent retrotranslocation and proteolytic processing govern formation of active Nrf1 upon proteasome inhibition. eLife 3: e01856.
    • (2014) eLife , vol.3 , pp. e01856
    • Radhakrishnan, S.K.1    den Besten, W.2    Deshaies, R.J.3
  • 56
    • 77950366349 scopus 로고    scopus 로고
    • Transcription factor Nrf1 mediates the proteasome recovery pathway after proteasome inhibition in mammalian cells
    • Radhakrishnan, S.K., Lee, C.S., Young, P., Beskow, A., Chan, J.Y., and Deshaies, R.J. (2010). Transcription factor Nrf1 mediates the proteasome recovery pathway after proteasome inhibition in mammalian cells. Mol. Cell 38: 17-28.
    • (2010) Mol. Cell , vol.38 , pp. 17-28
    • Radhakrishnan, S.K.1    Lee, C.S.2    Young, P.3    Beskow, A.4    Chan, J.Y.5    Deshaies, R.J.6
  • 57
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D., McCarthy, D.J., and Smyth, G.K. (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 60
    • 84874823498 scopus 로고    scopus 로고
    • Characterization and quantification of intact 26S proteasome proteins by real-time measurement of intrinsic fluorescence prior to top-down mass spectrometry
    • Russell, J.D., Scalf, M., Book, A.J., Ladror, D.T., Vierstra, R.D., Smith, L.M., and Coon, J.J. (2013). Characterization and quantification of intact 26S proteasome proteins by real-time measurement of intrinsic fluorescence prior to top-down mass spectrometry. PLoS One 8: e58157.
    • (2013) PLoS One , vol.8 , pp. e58157
    • Russell, J.D.1    Scalf, M.2    Book, A.J.3    Ladror, D.T.4    Vierstra, R.D.5    Smith, L.M.6    Coon, J.J.7
  • 61
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview: Extensible visualization of microarray data
    • Saldanha, A.J. (2004). Java Treeview: extensible visualization of microarray data. Bioinformatics 20: 3246-3248.
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 62
    • 84856613886 scopus 로고    scopus 로고
    • The plant heat stress transcription factor (Hsf) family: Structure, function and evolution
    • Scharf, K.D., Berberich, T., Ebersberger, I., and Nover, L. (2012). The plant heat stress transcription factor (Hsf) family: structure, function and evolution. Biochim. Biophys. Acta 1819: 104-119.
    • (2012) Biochim. Biophys. Acta , vol.1819 , pp. 104-119
    • Scharf, K.D.1    Berberich, T.2    Ebersberger, I.3    Nover, L.4
  • 63
    • 84936875256 scopus 로고    scopus 로고
    • Proteotoxic stress reprograms the chromatin landscape of SUMO modification
    • Seifert, A., Schofield, P., Barton, G.J., and Hay, R.T. (2015). Proteotoxic stress reprograms the chromatin landscape of SUMO modification. Sci. Signal. 8: rs7.
    • (2015) Sci. Signal. , vol.8 , pp. rs7
    • Seifert, A.1    Schofield, P.2    Barton, G.J.3    Hay, R.T.4
  • 64
    • 84904990897 scopus 로고    scopus 로고
    • Proteasome-mediated processing of Nrf1 is essential for coordinate induction of all proteasome subunits and p97
    • Sha, Z., and Goldberg, A.L. (2014). Proteasome-mediated processing of Nrf1 is essential for coordinate induction of all proteasome subunits and p97. Curr. Biol. 24: 1573-1583.
    • (2014) Curr. Biol. , vol.24 , pp. 1573-1583
    • Sha, Z.1    Goldberg, A.L.2
  • 66
    • 84925482725 scopus 로고    scopus 로고
    • Identification of minimum Rpn4-responsive elements in genes related to proteasome functions
    • Shirozu, R., Yashiroda, H., and Murata, S. (2015). Identification of minimum Rpn4-responsive elements in genes related to proteasome functions. FEBS Lett. 589: 933-940.
    • (2015) FEBS Lett. , vol.589 , pp. 933-940
    • Shirozu, R.1    Yashiroda, H.2    Murata, S.3
  • 68
    • 0037390990 scopus 로고    scopus 로고
    • The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis growth and development supports a substrate-specific function in abscisic acid signaling
    • Smalle, J., Kurepa, J., Yang, P., Emborg, T.J., Babiychuk, E., Kushnir, S., and Vierstra, R.D. (2003). The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis growth and development supports a substrate-specific function in abscisic acid signaling. Plant Cell 15: 965-980.
    • (2003) Plant Cell , vol.15 , pp. 965-980
    • Smalle, J.1    Kurepa, J.2    Yang, P.3    Emborg, T.J.4    Babiychuk, E.5    Kushnir, S.6    Vierstra, R.D.7
  • 69
    • 70349515988 scopus 로고    scopus 로고
    • Regulation of leaf organ size by the Arabidopsis RPT2a 19S proteasome subunit
    • Sonoda, Y., Sako, K., Maki, Y., Yamazaki, N., Yamamoto, H., Ikeda, A., and Yamaguchi, J. (2009). Regulation of leaf organ size by the Arabidopsis RPT2a 19S proteasome subunit. Plant J. 60: 68-78.
    • (2009) Plant J. , vol.60 , pp. 68-78
    • Sonoda, Y.1    Sako, K.2    Maki, Y.3    Yamazaki, N.4    Yamamoto, H.5    Ikeda, A.6    Yamaguchi, J.7
  • 71
    • 0029806477 scopus 로고    scopus 로고
    • The multiubiquitinchain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover
    • van Nocker, S., Sadis, S., Rubin, D.M., Glickman, M., Fu, H., Coux, O., Wefes, I., Finley, D., and Vierstra, R.D. (1996). The multiubiquitinchain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover. Mol. Cell. Biol. 16: 6020-6028.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 6020-6028
    • van Nocker, S.1    Sadis, S.2    Rubin, D.M.3    Glickman, M.4    Fu, H.5    Coux, O.6    Wefes, I.7    Finley, D.8    Vierstra, R.D.9
  • 72
    • 0029809862 scopus 로고    scopus 로고
    • Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions
    • Vidal, M., Brachmann, R.K., Fattaey, A., Harlow, E., and Boeke, J.D. (1996). Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions. Proc. Natl. Acad. Sci. USA 93: 10315-10320.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 10315-10320
    • Vidal, M.1    Brachmann, R.K.2    Fattaey, A.3    Harlow, E.4    Boeke, J.D.5
  • 73
    • 84859071143 scopus 로고    scopus 로고
    • JUNGBRUNNEN1, a reactive oxygen speciesresponsive NAC transcription factor, regulates longevity in Arabidopsis
    • Wu, A., et al. (2012). JUNGBRUNNEN1, a reactive oxygen speciesresponsive NAC transcription factor, regulates longevity in Arabidopsis. Plant Cell 24: 482-506.
    • (2012) Plant Cell , vol.24 , pp. 482-506
    • Wu, A.1
  • 74
    • 0035853037 scopus 로고    scopus 로고
    • RPN4 is a ligand, substrate, and transcriptional regulator of the 26S proteasome: A negative feedback circuit
    • Xie, Y., and Varshavsky, A. (2001). RPN4 is a ligand, substrate, and transcriptional regulator of the 26S proteasome: a negative feedback circuit. Proc. Natl. Acad. Sci. USA 98: 3056-3061.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 3056-3061
    • Xie, Y.1    Varshavsky, A.2
  • 75
    • 80052341399 scopus 로고    scopus 로고
    • Identification of recognition sequence of ANAC078 protein by the cyclic amplification and selection of targets technique
    • Yabuta, Y., Morishita, T., Kojima, Y., Maruta, T., Nishizawa-Yokoi, A., and Shigeoka, S. (2010). Identification of recognition sequence of ANAC078 protein by the cyclic amplification and selection of targets technique. Plant Signal. Behav. 5: 695-697.
    • (2010) Plant Signal. Behav. , vol.5 , pp. 695-697
    • Yabuta, Y.1    Morishita, T.2    Kojima, Y.3    Maruta, T.4    Nishizawa-Yokoi, A.5    Shigeoka, S.6
  • 76
    • 80052334230 scopus 로고    scopus 로고
    • Involvement of Arabidopsis NAC transcription factor in the regulation of 20S and 26S proteasomes
    • Yabuta, Y., Osada, R., Morishita, T., Nishizawa-Yokoi, A., Tamoi, M., Maruta, T., and Shigeoka, S. (2011). Involvement of Arabidopsis NAC transcription factor in the regulation of 20S and 26S proteasomes. Plant Sci. 181: 421-427.
    • (2011) Plant Sci. , vol.181 , pp. 421-427
    • Yabuta, Y.1    Osada, R.2    Morishita, T.3    Nishizawa-Yokoi, A.4    Tamoi, M.5    Maruta, T.6    Shigeoka, S.7
  • 77
    • 84964671305 scopus 로고    scopus 로고
    • Arabidopsis PROTEASOME REGULATOR1 is required for auxin-mediated suppression of proteasome activity and regulates auxin signaling
    • Yang, B.-J., Han, X.-X., Yin, L.-L., Xing, M.-Q., Xu, Z.-H., and Xue, H.-W. (2016). Arabidopsis PROTEASOME REGULATOR1 is required for auxin-mediated suppression of proteasome activity and regulates auxin signaling. Nat. Commun. 7: 11388.
    • (2016) Nat. Commun. , vol.7 , pp. 11388
    • Yang, B.-J.1    Han, X.-X.2    Yin, L.-L.3    Xing, M.-Q.4    Xu, Z.-H.5    Xue, H.-W.6
  • 78
    • 1342346597 scopus 로고    scopus 로고
    • Purification of the Arabidopsis 26S proteasome: Biochemical and molecular analyses revealed the presence of multiple isoforms
    • Yang, P., Fu, H., Walker, J., Papa, C.M., Smalle, J., Ju, Y.M., and Vierstra, R.D. (2004). Purification of the Arabidopsis 26S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms. J. Biol. Chem. 279: 6401-6413.
    • (2004) J. Biol. Chem. , vol.279 , pp. 6401-6413
    • Yang, P.1    Fu, H.2    Walker, J.3    Papa, C.M.4    Smalle, J.5    Ju, Y.M.6    Vierstra, R.D.7
  • 79
    • 0029944245 scopus 로고    scopus 로고
    • Effects of Fis on ribosome synthesis and activity and on rRNA promoter activities in Escherichia coli
    • Zhang, X., and Bremer, H. (1996). Effects of Fis on ribosome synthesis and activity and on rRNA promoter activities in Escherichia coli. J. Mol. Biol. 259: 27-40.
    • (1996) J. Mol. Biol. , vol.259 , pp. 27-40
    • Zhang, X.1    Bremer, H.2
  • 80
    • 84873519723 scopus 로고    scopus 로고
    • NBR1-mediated selective autophagy targets insoluble ubiquitinated protein aggregates in plant stress responses
    • Zhou, J., Wang, J., Cheng, Y., Chi, Y.J., Fan, B., Yu, J.Q., and Chen, Z. (2013). NBR1-mediated selective autophagy targets insoluble ubiquitinated protein aggregates in plant stress responses. PLoS Genet. 9: e1003196.
    • (2013) PLoS Genet. , vol.9 , pp. e1003196
    • Zhou, J.1    Wang, J.2    Cheng, Y.3    Chi, Y.J.4    Fan, B.5    Yu, J.Q.6    Chen, Z.7


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