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Volumn 113, Issue 27, 2016, Pages 7626-7631

Highly efficient primed spacer acquisition from targets destroyed by the Escherichia coli type I-E CRISPR-Cas interfering complex

Author keywords

Crispr interference; CRISPR Cas; Primed crispr adaptation

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CRISPR ASSOCIATED PROTEIN; PLASMID DNA; PLASMID VECTOR; CAS2 PROTEIN, E COLI; DEOXYRIBONUCLEASE; ENDONUCLEASE; ESCHERICHIA COLI PROTEIN; SPACER DNA; YGBT PROTEIN, E COLI;

EID: 84977273804     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1602639113     Document Type: Article
Times cited : (67)

References (36)
  • 1
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • Barrangou R, et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315(5819):1709-1712.
    • (2007) Science , vol.315 , Issue.5819 , pp. 1709-1712
    • Barrangou, R.1
  • 2
    • 49649114086 scopus 로고    scopus 로고
    • Small CRISPR RNAs guide antiviral defense in prokaryotes
    • Brouns SJ, et al. (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321(5891):960-964.
    • (2008) Science , vol.321 , Issue.5891 , pp. 960-964
    • Brouns, S.J.1
  • 3
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini LA, Sontheimer EJ (2008) CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322(5909):1843-1845.
    • (2008) Science , vol.322 , Issue.5909 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 4
    • 84944449180 scopus 로고    scopus 로고
    • An updated evolutionary classification of CRISPR-Cas systems
    • Makarova KS, et al. (2015) An updated evolutionary classification of CRISPR-Cas systems. Nat Rev Microbiol 13(11):722-736.
    • (2015) Nat Rev Microbiol , vol.13 , Issue.11 , pp. 722-736
    • Makarova, K.S.1
  • 5
    • 84924664059 scopus 로고    scopus 로고
    • Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity
    • Nuñez JK, Lee AS, Engelman A, Doudna JA (2015) Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity. Nature 519(7542):193-198.
    • (2015) Nature , vol.519 , Issue.7542 , pp. 193-198
    • Nuñez, J.K.1    Lee, A.S.2    Engelman, A.3    Doudna, J.A.4
  • 6
    • 84861639567 scopus 로고    scopus 로고
    • Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
    • Yosef I, Goren MG, Qimron U (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 40(12):5569-5576.
    • (2012) Nucleic Acids Res , vol.40 , Issue.12 , pp. 5569-5576
    • Yosef, I.1    Goren, M.G.2    Qimron, U.3
  • 7
    • 84904019733 scopus 로고    scopus 로고
    • Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system
    • Arslan Z, Hermanns V, Wurm R, Wagner R, Pul Ü (2014) Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system. Nucleic Acids Res 42(12):7884-7893.
    • (2014) Nucleic Acids Res , vol.42 , Issue.12 , pp. 7884-7893
    • Arslan, Z.1    Hermanns, V.2    Wurm, R.3    Wagner, R.4    Pul, Ü.5
  • 8
    • 38949123143 scopus 로고    scopus 로고
    • Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
    • Deveau H, et al. (2008) Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol 190(4):1390-1400.
    • (2008) J Bacteriol , vol.190 , Issue.4 , pp. 1390-1400
    • Deveau, H.1
  • 9
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C (2009) Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155(Pt 3):733-740.
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Almendros, C.4
  • 10
    • 84861990812 scopus 로고    scopus 로고
    • Mechanism of foreign DNA selection in a bacterial adaptive immune system
    • Sashital DG, Wiedenheft B, Doudna JA (2012) Mechanism of foreign DNA selection in a bacterial adaptive immune system. Mol Cell 46(5):606-615.
    • (2012) Mol Cell , vol.46 , Issue.5 , pp. 606-615
    • Sashital, D.G.1    Wiedenheft, B.2    Doudna, J.A.3
  • 11
    • 84908508061 scopus 로고    scopus 로고
    • Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease
    • Anders C, Niewoehner O, Duerst A, Jinek M (2014) Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease. Nature 513(7519):569-573.
    • (2014) Nature , vol.513 , Issue.7519 , pp. 569-573
    • Anders, C.1    Niewoehner, O.2    Duerst, A.3    Jinek, M.4
  • 12
    • 84959422840 scopus 로고    scopus 로고
    • Structural basis for promiscuous PAM recognition in type I-E Cascade from E. Coli
    • Hayes RP, et al. (2016) Structural basis for promiscuous PAM recognition in type I-E Cascade from E. coli. Nature 530(7591):499-503.
    • (2016) Nature , vol.530 , Issue.7591 , pp. 499-503
    • Hayes, R.P.1
  • 13
    • 79955574254 scopus 로고    scopus 로고
    • Structural basis for CRISPR RNA-guided DNA recognition by Cascade
    • Jore MM, et al. (2011) Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nat Struct Mol Biol 18(5):529-536.
    • (2011) Nat Struct Mol Biol , vol.18 , Issue.5 , pp. 529-536
    • Jore, M.M.1
  • 14
    • 84903975702 scopus 로고    scopus 로고
    • Direct observation of R-loop formation by single RNA-guided Cas9 and Cascade effector complexes
    • Szczelkun MD, et al. (2014) Direct observation of R-loop formation by single RNA-guided Cas9 and Cascade effector complexes. Proc Natl Acad Sci USA 111(27):9798-9803.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.27 , pp. 9798-9803
    • Szczelkun, M.D.1
  • 15
    • 84861996069 scopus 로고    scopus 로고
    • CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
    • Westra ER, et al. (2012) CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol Cell 46(5):595-605.
    • (2012) Mol Cell , vol.46 , Issue.5 , pp. 595-605
    • Westra, E.R.1
  • 16
    • 84881256166 scopus 로고    scopus 로고
    • Vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target
    • Mulepati S, Bailey S (2013) In vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target. J Biol Chem 288(31):22184-22192.
    • (2013) J Biol Chem , vol.288 , Issue.31 , pp. 22184-22192
    • Mulepati, S.1    Bailey, S.2
  • 17
    • 79959963663 scopus 로고    scopus 로고
    • Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
    • Semenova E, et al. (2011) Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc Natl Acad Sci USA 108(25):10098-10103.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.25 , pp. 10098-10103
    • Semenova, E.1
  • 18
    • 84864864464 scopus 로고    scopus 로고
    • Molecular memory of prior infections activates the CRISPR/ Cas adaptive bacterial immunity system
    • Datsenko KA, et al. (2012) Molecular memory of prior infections activates the CRISPR/ Cas adaptive bacterial immunity system. Nat Commun 3:945.
    • (2012) Nat Commun , vol.3 , pp. 945
    • Datsenko, K.A.1
  • 19
    • 84899087750 scopus 로고    scopus 로고
    • Degenerate target sites mediate rapid primed CRISPR adaptation
    • Fineran PC, et al. (2014) Degenerate target sites mediate rapid primed CRISPR adaptation. Proc Natl Acad Sci USA 111(16):E1629-E1638.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.16 , pp. E1629-E1638
    • Fineran, P.C.1
  • 20
    • 84895823059 scopus 로고    scopus 로고
    • Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process
    • Li M, Wang R, Zhao D, Xiang H (2014) Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process. Nucleic Acids Res 42(4):2483-2492.
    • (2014) Nucleic Acids Res , vol.42 , Issue.4 , pp. 2483-2492
    • Li, M.1    Wang, R.2    Zhao, D.3    Xiang, H.4
  • 21
    • 84905594146 scopus 로고    scopus 로고
    • Priming in the Type I-F CRISPR-Cas system triggers strandindependent spacer acquisition, bi-directionally from the primed protospacer
    • Richter C, et al. (2014) Priming in the Type I-F CRISPR-Cas system triggers strandindependent spacer acquisition, bi-directionally from the primed protospacer. Nucleic Acids Res 42(13):8516-8526.
    • (2014) Nucleic Acids Res , vol.42 , Issue.13 , pp. 8516-8526
    • Richter, C.1
  • 22
    • 84928658828 scopus 로고    scopus 로고
    • Parasite exposure drives selective evolution of constitutive versus inducible defense
    • Westra ER, et al. (2015) Parasite exposure drives selective evolution of constitutive versus inducible defense. Curr Biol 25(8):1043-1049.
    • (2015) Curr Biol , vol.25 , Issue.8 , pp. 1043-1049
    • Westra, E.R.1
  • 23
    • 84926226607 scopus 로고    scopus 로고
    • Two distinct DNA binding modes guide dual roles of a CRISPR-Cas protein complex
    • Blosser TR, et al. (2015) Two distinct DNA binding modes guide dual roles of a CRISPR-Cas protein complex. Mol Cell 58(1):60-70.
    • (2015) Mol Cell , vol.58 , Issue.1 , pp. 60-70
    • Blosser, T.R.1
  • 24
    • 84946562795 scopus 로고    scopus 로고
    • Surveillance and processing of foreign DNA by the Escherichia coli CRISPR-Cas system
    • Redding S, et al. (2015) Surveillance and processing of foreign DNA by the Escherichia coli CRISPR-Cas system. Cell 163(4):854-865.
    • (2015) Cell , vol.163 , Issue.4 , pp. 854-865
    • Redding, S.1
  • 25
    • 84901307358 scopus 로고    scopus 로고
    • Pervasive generation of oppositely oriented spacers during CRISPR adaptation
    • Shmakov S, et al. (2014) Pervasive generation of oppositely oriented spacers during CRISPR adaptation. Nucleic Acids Res 42(9):5907-5916.
    • (2014) Nucleic Acids Res , vol.42 , Issue.9 , pp. 5907-5916
    • Shmakov, S.1
  • 26
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97(12):6640-6645.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.12 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 27
    • 70349866687 scopus 로고    scopus 로고
    • ShortRead: A bioconductor package for input, quality assessment and exploration of high-throughput sequence data
    • Morgan M, et al. (2009) ShortRead: A bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics 25(19): 2607-2608.
    • (2009) Bioinformatics , vol.25 , Issue.19 , pp. 2607-2608
    • Morgan, M.1
  • 30
    • 84942156327 scopus 로고    scopus 로고
    • The Cas6e ribonuclease is not required for interference and adaptation by the E. Coli type I-E CRISPR-Cas system
    • Semenova E, et al. (2015) The Cas6e ribonuclease is not required for interference and adaptation by the E. coli type I-E CRISPR-Cas system. Nucleic Acids Res 43(12): 6049-6061.
    • (2015) Nucleic Acids Res , vol.43 , Issue.12 , pp. 6049-6061
    • Semenova, E.1
  • 31
    • 77956628107 scopus 로고    scopus 로고
    • Transcription, processing and function of CRISPR cassettes in Escherichia coli
    • Pougach K, et al. (2010) Transcription, processing and function of CRISPR cassettes in Escherichia coli. Mol Microbiol 77(6):1367-1379.
    • (2010) Mol Microbiol , vol.77 , Issue.6 , pp. 1367-1379
    • Pougach, K.1
  • 32
    • 84959407493 scopus 로고    scopus 로고
    • CRISPR interference and priming varies with individual spacer sequences
    • Xue C, et al. (2015) CRISPR interference and priming varies with individual spacer sequences. Nucleic Acids Res 43(22):10831-10847.
    • (2015) Nucleic Acids Res , vol.43 , Issue.22 , pp. 10831-10847
    • Xue, C.1
  • 33
    • 84928473578 scopus 로고    scopus 로고
    • CRISPR adaptation biases explain preference for acquisition of foreign DNA
    • Levy A, et al. (2015) CRISPR adaptation biases explain preference for acquisition of foreign DNA. Nature 520(7548):505-510.
    • (2015) Nature , vol.520 , Issue.7548 , pp. 505-510
    • Levy, A.1
  • 35
    • 84946130269 scopus 로고    scopus 로고
    • Structural and mechanistic basis of PAM-dependent spacer acquisition in CRISPR-Cas systems
    • Wang J, et al. (2015) Structural and mechanistic basis of PAM-dependent spacer acquisition in CRISPR-Cas systems. Cell 163(4):840-853.
    • (2015) Cell , vol.163 , Issue.4 , pp. 840-853
    • Wang, J.1
  • 36
    • 84954537942 scopus 로고    scopus 로고
    • CRISPR-Cas adaptation: Insights into the mechanism of action
    • Amitai G, Sorek R (2016) CRISPR-Cas adaptation: Insights into the mechanism of action. Nat Rev Microbiol 14(2):67-76.
    • (2016) Nat Rev Microbiol , vol.14 , Issue.2 , pp. 67-76
    • Amitai, G.1    Sorek, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.