-
1
-
-
84905705842
-
Promiscuous MYC locus rearrangements hijack enhancers but mostly super-enhancers to dysregulate MYC expression in multiple myeloma
-
Affer M, Chesi M, Chen WD, Keats JJ, Demchenko YN, Tamizhmani K, Garbitt VM, Riggs DL, Brents LA, Roschke AV, et al. 2014. Promiscuous MYC locus rearrangements hijack enhancers but mostly super-enhancers to dysregulate MYC expression in multiple myeloma. Leukemia 28: 1725-1735.
-
(2014)
Leukemia
, vol.28
, pp. 1725-1735
-
-
Affer, M.1
Chesi, M.2
Chen, W.D.3
Keats, J.J.4
Demchenko, Y.N.5
Tamizhmani, K.6
Garbitt, V.M.7
Riggs, D.L.8
Brents, L.A.9
Roschke, A.V.10
-
2
-
-
84949212255
-
ATAC-seq: A method for assaying chromatin accessibility genome-wide
-
Buenrostro JD, Wu B, Chang HY, Greenleaf WJ. 2015. ATAC-seq: a method for assaying chromatin accessibility genome-wide. Curr Protoc Mol Biol 109: 21 29 21-29.
-
(2015)
Curr Protoc Mol Biol 109
, vol.21
, Issue.29
, pp. 21-29
-
-
Buenrostro, J.D.1
Wu, B.2
Chang, H.Y.3
Greenleaf, W.J.4
-
3
-
-
84935009372
-
Genomic classification of cutaneous melanoma
-
The Cancer Genome Atlas Network. 2015. Genomic classification of cutaneous melanoma. Cell 161: 1681-1696.
-
(2015)
Cell
, vol.161
, pp. 1681-1696
-
-
-
4
-
-
84891953718
-
Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma
-
Chapuy B, McKeown MR, Lin CY, Monti S, Roemer MG, Qi J, Rahl PB, Sun HH, Yeda KT, Doench JG, et al. 2013. Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma. Cancer Cell 24: 777-790.
-
(2013)
Cancer Cell
, vol.24
, pp. 777-790
-
-
Chapuy, B.1
McKeown, M.R.2
Lin, C.Y.3
Monti, S.4
Roemer, M.G.5
Qi, J.6
Rahl, P.B.7
Sun, H.H.8
Yeda, K.T.9
Doench, J.G.10
-
5
-
-
84911942289
-
CDK7 inhibition suppresses super-enhancerlinked oncogenic transcription in MYCN-driven cancer
-
Chipumuro E, Marco E, Christensen CL, Kwiatkowski N, Zhang T, Hatheway CM, Abraham BJ, Sharma B, Yeung C, Altabef A, et al. 2014. CDK7 inhibition suppresses super-enhancerlinked oncogenic transcription in MYCN-driven cancer. Cell 159: 1126-1139.
-
(2014)
Cell
, vol.159
, pp. 1126-1139
-
-
Chipumuro, E.1
Marco, E.2
Christensen, C.L.3
Kwiatkowski, N.4
Zhang, T.5
Hatheway, C.M.6
Abraham, B.J.7
Sharma, B.8
Yeung, C.9
Altabef, A.10
-
6
-
-
84884482254
-
The mutational landscape of chromatin regulatory factors across 4,623 tumor samples
-
Gonzalez-Perez A, Jene-Sanz A, Lopez-Bigas N. 2013. The mutational landscape of chromatin regulatory factors across 4,623 tumor samples. Genome Biol 14: r106.
-
(2013)
Genome Biol
, vol.14
-
-
Gonzalez-Perez, A.1
Jene-Sanz, A.2
Lopez-Bigas, N.3
-
7
-
-
84898494315
-
A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia
-
Groschel S, Sanders MA, Hoogenboezem R, de Wit E, Bouwman BA, Erpelinck C, van der Velden VH, Havermans M, Avellino R, van Lom K, et al. 2014. A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia. Cell 157: 369-381.
-
(2014)
Cell
, vol.157
, pp. 369-381
-
-
Groschel, S.1
Sanders, M.A.2
Hoogenboezem, R.3
De Wit, E.4
Bouwman, B.A.5
Erpelinck, C.6
Van Der Velden, V.H.7
Havermans, M.8
Avellino, R.9
Van Lom, K.10
-
9
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
Hnisz D, Abraham BJ, Lee TI, Lau A, Saint-Andre V, Sigova AA, Hoke HA, Young RA. 2013. Super-enhancers in the control of cell identity and disease. Cell 155: 934-947.
-
(2013)
Cell
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-Andre, V.5
Sigova, A.A.6
Hoke, H.A.7
Young, R.A.8
-
10
-
-
84928207423
-
Convergence of developmental and oncogenic signaling pathways at transcriptional super-enhancers
-
Hnisz D, Schuijers J, Lin CY, Weintraub AS, Abraham BJ, Lee TI, Bradner JE, Young RA. 2015. Convergence of developmental and oncogenic signaling pathways at transcriptional super-enhancers. Mol Cell 58: 362-370.
-
(2015)
Mol Cell
, vol.58
, pp. 362-370
-
-
Hnisz, D.1
Schuijers, J.2
Lin, C.Y.3
Weintraub, A.S.4
Abraham, B.J.5
Lee, T.I.6
Bradner, J.E.7
Young, R.A.8
-
11
-
-
75749101495
-
Chromatin remodelling during development
-
Ho L, Crabtree GR. 2010. Chromatin remodelling during development. Nature 463: 474-484.
-
(2010)
Nature
, vol.463
, pp. 474-484
-
-
Ho, L.1
Crabtree, G.R.2
-
12
-
-
84864258996
-
A landscape of driver mutations in melanoma
-
Hodis E, Watson IR, Kryukov GV, Arold ST, Imielinski M, Theurillat JP, Nickerson E, Auclair D, Li L, Place C, et al. 2012. A landscape of driver mutations in melanoma. Cell 150: 251-263.
-
(2012)
Cell
, vol.150
, pp. 251-263
-
-
Hodis, E.1
Watson, I.R.2
Kryukov, G.V.3
Arold, S.T.4
Imielinski, M.5
Theurillat, J.P.6
Nickerson, E.7
Auclair, D.8
Li, L.9
Place, C.10
-
13
-
-
80053501181
-
Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1
-
Hu G, Schones DE, Cui K, Ybarra R, Northrup D, Tang Q, Gattinoni L, Restifo NP, Huang S, Zhao K. 2011. Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1. Genome Res 21: 1650-1658.
-
(2011)
Genome Res
, vol.21
, pp. 1650-1658
-
-
Hu, G.1
Schones, D.E.2
Cui, K.3
Ybarra, R.4
Northrup, D.5
Tang, Q.6
Gattinoni, L.7
Restifo, N.P.8
Huang, S.9
Zhao, K.10
-
14
-
-
84918527386
-
Pioneer transcription factors in cell reprogramming
-
Iwafuchi-Doi M, Zaret KS. 2014. Pioneer transcription factors in cell reprogramming. Genes Dev 28: 2679-2692.
-
(2014)
Genes Dev
, vol.28
, pp. 2679-2692
-
-
Iwafuchi-Doi, M.1
Zaret, K.S.2
-
15
-
-
82255191954
-
Embryonic stemcell-specific signatures in cancer: Insights into genomic regulatory networks and implications for medicine
-
Kim J, Orkin SH. 2011. Embryonic stemcell-specific signatures in cancer: insights into genomic regulatory networks and implications for medicine. Genome Med 3: 75.
-
(2011)
Genome Med
, vol.3
, pp. 75
-
-
Kim, J.1
Orkin, S.H.2
-
16
-
-
84904963991
-
Targeting transcription regulation in cancer with a covalent CDK7 inhibitor
-
Kwiatkowski N, Zhang T, Rahl PB, Abraham BJ, Reddy J, Ficarro SB, Dastur A, Amzallag A, Ramaswamy S, Tesar B, et al. 2014. Targeting transcription regulation in cancer with a covalent CDK7 inhibitor. Nature 511: 616-620.
-
(2014)
Nature
, vol.511
, pp. 616-620
-
-
Kwiatkowski, N.1
Zhang, T.2
Rahl, P.B.3
Abraham, B.J.4
Reddy, J.5
Ficarro, S.B.6
Dastur, A.7
Amzallag, A.8
Ramaswamy, S.9
Tesar, B.10
-
17
-
-
84989788843
-
Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells
-
Laurette P, Strub T, Koludrovic D, Keime C, Le Gras S, Seberg H, Van Otterloo E, Imrichova H, Siddaway R, Aerts S, et al. 2015. Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells. eLife doi: 10.7554/eLife.06857.
-
(2015)
Elife
-
-
Laurette, P.1
Strub, T.2
Koludrovic, D.3
Keime, C.4
Le Gras, S.5
Seberg, H.6
Van Otterloo, E.7
Imrichova, H.8
Siddaway, R.9
Aerts, S.10
-
18
-
-
84905196758
-
Melanoma epigenetics: Novel mechanisms, markers, and medicines
-
Lee JJ, Murphy GF, Lian CG. 2014. Melanoma epigenetics: novel mechanisms, markers, and medicines. Lab Invest 94: 822-838.
-
(2014)
Lab Invest
, vol.94
, pp. 822-838
-
-
Lee, J.J.1
Murphy, G.F.2
Lian, C.G.3
-
19
-
-
84876222028
-
Selective inhibition of tumor oncogenes by disruption of super-enhancers
-
Loven J, Hoke HA, Lin CY, Lau A, Orlando DA, Vakoc CR, Bradner JE, Lee TI, Young RA. 2013. Selective inhibition of tumor oncogenes by disruption of super-enhancers. Cell 153: 320-334.
-
(2013)
Cell
, vol.153
, pp. 320-334
-
-
Loven, J.1
Hoke, H.A.2
Lin, C.Y.3
Lau, A.4
Orlando, D.A.5
Vakoc, C.R.6
Bradner, J.E.7
Lee, T.I.8
Young, R.A.9
-
20
-
-
84917710235
-
Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element
-
Mansour MR, Abraham BJ, Anders L, Berezovskaya A, Gutierrez A, Durbin AD, Etchin J, Lawton L, Sallan SE, Silverman LB, et al. 2014. Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element. Science 346: 1373-1377.
-
(2014)
Science
, vol.346
, pp. 1373-1377
-
-
Mansour, M.R.1
Abraham, B.J.2
Ers, L.3
Berezovskaya, A.4
Gutierrez, A.5
Durbin, A.D.6
Etchin, J.7
Lawton, L.8
Sallan, S.E.9
Silverman, L.B.10
-
22
-
-
84921914889
-
SWI/SNF chromatin remodeling and human malignancies
-
Masliah-Planchon J, Bieche I, Guinebretiere JM, Bourdeaut F, Delattre O. 2015. SWI/SNF chromatin remodeling and human malignancies. Annu Rev Pathol 10: 145-171.
-
(2015)
Annu Rev Pathol
, vol.10
, pp. 145-171
-
-
Masliah-Planchon, J.1
Bieche, I.2
Guinebretiere, J.M.3
Bourdeaut, F.4
Delattre, O.5
-
23
-
-
84901485249
-
ATP-dependent chromatin remodeling complexes as novel targets for cancer therapy
-
Mayes K, Qiu Z, Alhazmi A, Landry JW. 2014. ATP-dependent chromatin remodeling complexes as novel targets for cancer therapy. Adv Cancer Res 121: 183-233.
-
(2014)
Adv Cancer Res
, vol.121
, pp. 183-233
-
-
Mayes, K.1
Qiu, Z.2
Alhazmi, A.3
Landry, J.W.4
-
24
-
-
84899720407
-
SWI/SNF chromatin remodeling enzymes in melanocyte differentiation and melanoma
-
Mehrotra A, Mehta G, Aras S, Trivedi A, de la Serna IL. 2014. SWI/SNF chromatin remodeling enzymes in melanocyte differentiation and melanoma. Crit Rev Eukaryot Gene Expr 24: 151-161.
-
(2014)
Crit Rev Eukaryot Gene Expr
, vol.24
, pp. 151-161
-
-
Mehrotra, A.1
Mehta, G.2
Aras, S.3
Trivedi, A.4
De La Serna, I.L.5
-
25
-
-
84933278181
-
Recurrent somatic mutations in regulatory regions of human cancer genomes
-
Melton C, Reuter JA, Spacek DV, Snyder M. 2015. Recurrent somatic mutations in regulatory regions of human cancer genomes. Nat Genet 47: 710-716.
-
(2015)
Nat Genet
, vol.47
, pp. 710-716
-
-
Melton, C.1
Reuter, J.A.2
Spacek, D.V.3
Snyder, M.4
-
26
-
-
84889094462
-
The mINO80 chromatin remodeling complex is required for efficient telomere replication and maintenance of genome stability
-
Min JN, Tian Y, Xiao Y, Wu L, Li L, Chang S. 2013. The mINO80 chromatin remodeling complex is required for efficient telomere replication and maintenance of genome stability. Cell Res 23: 1396-1413.
-
(2013)
Cell Res
, vol.23
, pp. 1396-1413
-
-
Min, J.N.1
Tian, Y.2
Xiao, Y.3
Wu, L.4
Li, L.5
Chang, S.6
-
27
-
-
67349147423
-
Chromatin remodelling beyond transcription: The INO80 and SWR1 complexes
-
Morrison AJ, Shen X. 2009. Chromatin remodelling beyond transcription: the INO80 and SWR1 complexes. Nat Rev Mol Cell Biol 10: 373-384.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 373-384
-
-
Morrison, A.J.1
Shen, X.2
-
28
-
-
84904816744
-
Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
-
Northcott PA, Lee C, Zichner T, Stutz AM, Erkek S, Kawauchi D, Shih DJ, Hovestadt V, Zapatka M, Sturm D, et al. 2014. Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma. Nature 511: 428-434.
-
(2014)
Nature
, vol.511
, pp. 428-434
-
-
Northcott, P.A.1
Lee, C.2
Zichner, T.3
Stutz, A.M.4
Erkek, S.5
Kawauchi, D.6
Shih, D.J.7
Hovestadt, V.8
Zapatka, M.9
Sturm, D.10
-
29
-
-
80055063786
-
ATP-dependent chromatin remodeling factors and their roles in affecting nucleosome fiber composition
-
Piatti P, Zeilner A, Lusser A. 2011. ATP-dependent chromatin remodeling factors and their roles in affecting nucleosome fiber composition. Int J Mol Sci 12: 6544-6565.
-
(2011)
Int J Mol Sci
, vol.12
, pp. 6544-6565
-
-
Piatti, P.1
Zeilner, A.2
Lusser, A.3
-
30
-
-
84925283769
-
What are super-enhancers?
-
Pott S, Lieb JD. 2015. What are super-enhancers? Nat Genet 47: 8-12.
-
(2015)
Nat Genet
, vol.47
, pp. 8-12
-
-
Pott, S.1
Lieb, J.D.2
-
31
-
-
1042290351
-
The SWI/SNF complex—chromatin and cancer
-
Roberts CW, Orkin SH. 2004. The SWI/SNF complex—chromatin and cancer. Nat Rev Cancer 4: 133-142.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 133-142
-
-
Roberts, C.W.1
Orkin, S.H.2
-
32
-
-
84872810488
-
The spectrum of SWI/SNF mutations, ubiquitous in human cancers
-
Shain AH, Pollack JR. 2013. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. PLoS One 8: e55119.
-
(2013)
Plos One
, vol.8
-
-
Shain, A.H.1
Pollack, J.R.2
-
33
-
-
9244239247
-
Atypical mechanism of regulation of the Wrch-1 Rho family small GTPase
-
Shutes A, Berzat AC, Cox AD, Der CJ. 2004. Atypical mechanism of regulation of the Wrch-1 Rho family small GTPase. Curr Biol 14: 2052-2056.
-
(2004)
Curr Biol
, vol.14
, pp. 2052-2056
-
-
Shutes, A.1
Berzat, A.C.2
Cox, A.D.3
Der, C.J.4
-
34
-
-
0024354304
-
Determination of subcutaneous tumor size in athymic (Nude) mice
-
Tomayko MM, Reynolds CP. 1989. Determination of subcutaneous tumor size in athymic (nude) mice. Cancer Chemother Pharmacol 24: 148-154.
-
(1989)
Cancer Chemother Pharmacol
, vol.24
, pp. 148-154
-
-
Tomayko, M.M.1
Reynolds, C.P.2
-
35
-
-
84859911648
-
Genetics and epigenetics of cutaneousmalignantmelanoma: A concert out of tune
-
van denHurk K, Niessen HE, Veeck J, van denOord JJ, van Steensel MA, ZurHausen A, vanEngeland M, Winnepenninckx VJ.2012. Genetics and epigenetics of cutaneousmalignantmelanoma: a concert out of tune. Biochim Biophys Acta 1826: 89-102.
-
(2012)
Biochim Biophys Acta
, vol.1826
, pp. 89-102
-
-
Van Denhurk, K.1
Niessen, H.E.2
Veeck, J.3
Van Denoord, J.J.4
Van Steensel, M.A.5
Zurhausen, A.6
Vanengeland, M.7
Winnepenninckx, V.J.8
-
36
-
-
84901846972
-
Translocations at 8q24 juxtaposeMYCwith genes that harbor superenhancers resulting in overexpression and poor prognosis in myeloma patients
-
Walker BA, Wardell CP, Brioli A, Boyle E, Kaiser MF, Begum DB, Dahir NB, Johnson DC, Ross FM, Davies FE, et al. 2014. Translocations at 8q24 juxtaposeMYCwith genes that harbor superenhancers resulting in overexpression and poor prognosis in myeloma patients. Blood Cancer J 4: e191.
-
(2014)
Blood Cancer J
, vol.4
-
-
Walker, B.A.1
Wardell, C.P.2
Brioli, A.3
Boyle, E.4
Kaiser, M.F.5
Begum, D.B.6
Dahir, N.B.7
Johnson, D.C.8
Ross, F.M.9
Davies, F.E.10
-
37
-
-
84899742411
-
INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development
-
Wang L, Du Y, Ward JM, Shimbo T, Lackford B, Zheng X, Miao YL, Zhou B, Han L, Fargo DC, et al. 2014. INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development. Cell Stem Cell 14: 575-591.
-
(2014)
Cell Stem Cell
, vol.14
, pp. 575-591
-
-
Wang, L.1
Du, Y.2
Ward, J.M.3
Shimbo, T.4
Lackford, B.5
Zheng, X.6
Miao, Y.L.7
Zhou, B.8
Han, L.9
Fargo, D.C.10
-
38
-
-
80052393885
-
The INO80 family of chromatinremodeling enzymes: Regulators of histone variant dynamics
-
Watanabe S, Peterson CL. 2010.The INO80 family of chromatinremodeling enzymes: regulators of histone variant dynamics. Cold Spring Harb Symp Quant Biol 75: 35-42.
-
(2010)
Cold Spring Harb Symp Quant Biol
, vol.75
, pp. 35-42
-
-
Watanabe, S.1
Peterson, C.L.2
-
39
-
-
84908894973
-
Genome-wide analysis of noncoding regulatory mutations in cancer
-
Weinhold N, Jacobsen A, Schultz N, Sander C, Lee W. 2014. Genome-wide analysis of noncoding regulatory mutations in cancer. Nat Genet 46: 1160-1165.
-
(2014)
Nat Genet
, vol.46
, pp. 1160-1165
-
-
Weinhold, N.1
Jacobsen, A.2
Schultz, N.3
Sander, C.4
Lee, W.5
-
40
-
-
84907312810
-
Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming
-
West JA, Cook A, Alver BH, Stadtfeld M, Deaton AM, Hochedlinger K, Park PJ, Tolstorukov MY, Kingston RE. 2014. Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming. Nat Commun 5: 4719.
-
(2014)
Nat Commun
, vol.5
, pp. 4719
-
-
West, J.A.1
Cook, A.2
Alver, B.H.3
Stadtfeld, M.4
Deaton, A.M.5
Hochedlinger, K.6
Park, P.J.7
Tolstorukov, M.Y.8
Kingston, R.E.9
-
41
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
Whyte WA, Orlando DA, Hnisz D, Abraham BJ, Lin CY, Kagey MH, Rahl PB, Lee TI, Young RA. 2013. Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153: 307-319.
-
(2013)
Cell
, vol.153
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
Rahl, P.B.7
Lee, T.I.8
Young, R.A.9
|