메뉴 건너뛰기




Volumn 5, Issue 5, 2016, Pages 395-404

Quantitative Analyses of Core Promoters Enable Precise Engineering of Regulated Gene Expression in Mammalian Cells

Author keywords

adoptive T cell therapy; chimeric antigen receptors; mammalian inducible promoters; mammalian synthetic biology; transcriptional control

Indexed keywords

CHIMERIC ANTIGEN RECEPTOR; HERPES SIMPLEX THYMIDINE KINASE; THYMIDINE KINASE; TRANSCRIPTION FACTOR JUNB; UNCLASSIFIED DRUG; LYMPHOCYTE ANTIGEN RECEPTOR;

EID: 84973165904     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/acssynbio.5b00266     Document Type: Article
Times cited : (68)

References (55)
  • 1
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • Elowitz, M. B. and Leibler, S. (2000) A synthetic oscillatory network of transcriptional regulators Nature 403, 335-338 10.1038/35002125
    • (2000) Nature , vol.403 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 2
    • 84898931419 scopus 로고    scopus 로고
    • Rapid and tunable post-translational coupling of genetic circuits
    • Prindle, A., Selimkhanov, J., Li, H., Razinkov, I., Tsimring, L. S., and Hasty, J. (2014) Rapid and tunable post-translational coupling of genetic circuits Nature 508, 387-391 10.1038/nature13238
    • (2014) Nature , vol.508 , pp. 387-391
    • Prindle, A.1    Selimkhanov, J.2    Li, H.3    Razinkov, I.4    Tsimring, L.S.5    Hasty, J.6
  • 3
    • 84875230351 scopus 로고    scopus 로고
    • Synthetic circuits integrating logic and memory in living cells
    • Siuti, P., Yazbek, J., and Lu, T. K. (2013) Synthetic circuits integrating logic and memory in living cells Nat. Biotechnol. 31, 448-452 10.1038/nbt.2510
    • (2013) Nat. Biotechnol. , vol.31 , pp. 448-452
    • Siuti, P.1    Yazbek, J.2    Lu, T.K.3
  • 4
    • 84861865655 scopus 로고    scopus 로고
    • Rewritable digital data storage in live cells via engineered control of recombination directionality
    • Bonnet, J., Subsoontorn, P., and Endy, D. (2012) Rewritable digital data storage in live cells via engineered control of recombination directionality Proc. Natl. Acad. Sci. U. S. A. 109, 8884-8889 10.1073/pnas.1202344109
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 8884-8889
    • Bonnet, J.1    Subsoontorn, P.2    Endy, D.3
  • 6
    • 50949122967 scopus 로고    scopus 로고
    • Design and construction of a double inversion recombination switch for heritable sequential genetic memory
    • Ham, T. S., Lee, S. K., Keasling, J. D., and Arkin, A. P. (2008) Design and construction of a double inversion recombination switch for heritable sequential genetic memory PLoS One 3, e2815 10.1371/journal.pone.0002815
    • (2008) PLoS One , vol.3 , pp. e2815
    • Ham, T.S.1    Lee, S.K.2    Keasling, J.D.3    Arkin, A.P.4
  • 7
    • 79952214973 scopus 로고    scopus 로고
    • Synthetic circuit identifies subpopulations with sustained memory of DNA damage
    • Burrill, D. R. and Silver, P. A. (2011) Synthetic circuit identifies subpopulations with sustained memory of DNA damage Genes Dev. 25, 434-439 10.1101/gad.1994911
    • (2011) Genes Dev. , vol.25 , pp. 434-439
    • Burrill, D.R.1    Silver, P.A.2
  • 8
    • 84863644753 scopus 로고    scopus 로고
    • Synthetic memory circuits for tracking human cell fate
    • Burrill, D. R., Inniss, M. C., Boyle, P. M., and Silver, P. A. (2012) Synthetic memory circuits for tracking human cell fate Genes Dev. 26, 1486-1497 10.1101/gad.189035.112
    • (2012) Genes Dev. , vol.26 , pp. 1486-1497
    • Burrill, D.R.1    Inniss, M.C.2    Boyle, P.M.3    Silver, P.A.4
  • 11
    • 84878381909 scopus 로고    scopus 로고
    • Synthetic analog computation in living cells
    • Daniel, R., Rubens, J. R., Sarpeshkar, R., and Lu, T. K. (2013) Synthetic analog computation in living cells Nature 497, 619-623 10.1038/nature12148
    • (2013) Nature , vol.497 , pp. 619-623
    • Daniel, R.1    Rubens, J.R.2    Sarpeshkar, R.3    Lu, T.K.4
  • 12
    • 0028670569 scopus 로고
    • In vivo repression by a site-specific DNA-binding protein designed against an oncogenic sequence
    • Choo, Y., Sanchez-Garcia, I., and Klug, A. (1994) In vivo repression by a site-specific DNA-binding protein designed against an oncogenic sequence Nature 372, 642-645 10.1038/372642a0
    • (1994) Nature , vol.372 , pp. 642-645
    • Choo, Y.1    Sanchez-Garcia, I.2    Klug, A.3
  • 13
    • 84864634066 scopus 로고    scopus 로고
    • A synthetic biology framework for programming eukaryotic transcription functions
    • Khalil, A. S., Lu, T. K., Bashor, C. J., Ramirez, C. L., Pyenson, N. C., Joung, J. K., and Collins, J. J. (2012) A synthetic biology framework for programming eukaryotic transcription functions Cell 150, 647-658 10.1016/j.cell.2012.05.045
    • (2012) Cell , vol.150 , pp. 647-658
    • Khalil, A.S.1    Lu, T.K.2    Bashor, C.J.3    Ramirez, C.L.4    Pyenson, N.C.5    Joung, J.K.6    Collins, J.J.7
  • 15
    • 84861170955 scopus 로고    scopus 로고
    • A transcription activator-like effector toolbox for genome engineering
    • Sanjana, N. E., Cong, L., Zhou, Y., Cunniff, M. M., Feng, G., and Zhang, F. (2012) A transcription activator-like effector toolbox for genome engineering Nat. Protoc. 7, 171-192 10.1038/nprot.2011.431
    • (2012) Nat. Protoc. , vol.7 , pp. 171-192
    • Sanjana, N.E.1    Cong, L.2    Zhou, Y.3    Cunniff, M.M.4    Feng, G.5    Zhang, F.6
  • 16
    • 84867300642 scopus 로고    scopus 로고
    • Engineering synthetic TAL effectors with orthogonal target sites
    • Garg, A., Lohmueller, J. J., Silver, P. A., and Armel, T. Z. (2012) Engineering synthetic TAL effectors with orthogonal target sites Nucleic Acids Res. 40, 7584-7595 10.1093/nar/gks404
    • (2012) Nucleic Acids Res. , vol.40 , pp. 7584-7595
    • Garg, A.1    Lohmueller, J.J.2    Silver, P.A.3    Armel, T.Z.4
  • 17
    • 84887104139 scopus 로고    scopus 로고
    • Orthogonal Cas9 proteins for RNA-guided gene regulation and editing
    • Esvelt, K. M., Mali, P., Braff, J. L., Moosburner, M., Yaung, S. J., and Church, G. M. (2013) Orthogonal Cas9 proteins for RNA-guided gene regulation and editing Nat. Methods 10, 1116-1121 10.1038/nmeth.2681
    • (2013) Nat. Methods , vol.10 , pp. 1116-1121
    • Esvelt, K.M.1    Mali, P.2    Braff, J.L.3    Moosburner, M.4    Yaung, S.J.5    Church, G.M.6
  • 18
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • Qi, L. S., Larson, M. H., Gilbert, L. A., Doudna, J. A., Weissman, J. S., Arkin, A. P., and Lim, W. A. (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression Cell 152, 1173-1183 10.1016/j.cell.2013.02.022
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 21
    • 84923297110 scopus 로고    scopus 로고
    • A split-Cas9 architecture for inducible genome editing and transcription modulation
    • Zetsche, B., Volz, S. E., and Zhang, F. (2015) A split-Cas9 architecture for inducible genome editing and transcription modulation Nat. Biotechnol. 33, 139-142 10.1038/nbt.3149
    • (2015) Nat. Biotechnol. , vol.33 , pp. 139-142
    • Zetsche, B.1    Volz, S.E.2    Zhang, F.3
  • 23
    • 84874111403 scopus 로고    scopus 로고
    • Emerging synthetic biology tools for engineering mammalian cell systems and expediting cell line development
    • Lanza, A. M., Cheng, J. K., and Alper, H. S. (2012) Emerging synthetic biology tools for engineering mammalian cell systems and expediting cell line development Curr. Opin. Chem. Eng. 1, 403-410 10.1016/j.coche.2012.09.005
    • (2012) Curr. Opin. Chem. Eng. , vol.1 , pp. 403-410
    • Lanza, A.M.1    Cheng, J.K.2    Alper, H.S.3
  • 24
    • 0026720075 scopus 로고
    • Tight control of gene expression in mammalian cells by tetracycline-responsive promoters
    • Gossen, M. and Bujard, H. (1992) Tight control of gene expression in mammalian cells by tetracycline-responsive promoters Proc. Natl. Acad. Sci. U. S. A. 89, 5547-5551 10.1073/pnas.89.12.5547
    • (1992) Proc. Natl. Acad. Sci. U. S. A. , vol.89 , pp. 5547-5551
    • Gossen, M.1    Bujard, H.2
  • 25
    • 67649819663 scopus 로고    scopus 로고
    • Controlling transgene expression in subcutaneous implants using a skin lotion containing the apple metabolite phloretin
    • Gitzinger, M., Kemmer, C., El-Baba, M. D., Weber, W., and Fussenegger, M. (2009) Controlling transgene expression in subcutaneous implants using a skin lotion containing the apple metabolite phloretin Proc. Natl. Acad. Sci. U. S. A. 106, 10638-10643 10.1073/pnas.0901501106
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 10638-10643
    • Gitzinger, M.1    Kemmer, C.2    El-Baba, M.D.3    Weber, W.4    Fussenegger, M.5
  • 26
    • 84925534393 scopus 로고    scopus 로고
    • Modular construction of mammalian gene circuits using TALE transcriptional repressors
    • Li, Y., Jiang, Y., Chen, H., Liao, W., Li, Z., Weiss, R., and Xie, Z. (2015) Modular construction of mammalian gene circuits using TALE transcriptional repressors Nat. Chem. Biol. 11, 207-213 10.1038/nchembio.1736
    • (2015) Nat. Chem. Biol. , vol.11 , pp. 207-213
    • Li, Y.1    Jiang, Y.2    Chen, H.3    Liao, W.4    Li, Z.5    Weiss, R.6    Xie, Z.7
  • 27
    • 0034017489 scopus 로고    scopus 로고
    • Development of a hypoxia-responsive vector for tumor-specific gene therapy
    • Shibata, T., Giaccia, A. J., and Brown, J. M. (2000) Development of a hypoxia-responsive vector for tumor-specific gene therapy Gene Ther. 7, 493-498 10.1038/sj.gt.3301124
    • (2000) Gene Ther. , vol.7 , pp. 493-498
    • Shibata, T.1    Giaccia, A.J.2    Brown, J.M.3
  • 28
    • 79957534572 scopus 로고    scopus 로고
    • Targeting hypoxia in cancer therapy
    • Wilson, W. R. and Hay, M. P. (2011) Targeting hypoxia in cancer therapy Nat. Rev. Cancer 11, 393-410 10.1038/nrc3064
    • (2011) Nat. Rev. Cancer , vol.11 , pp. 393-410
    • Wilson, W.R.1    Hay, M.P.2
  • 30
    • 77950480974 scopus 로고    scopus 로고
    • Treatment of chronic lymphocytic leukemia with genetically targeted autologous T cells: Case report of an unforeseen adverse event in a phase i clinical trial
    • Brentjens, R., Yeh, R., Bernal, Y., Riviere, I., and Sadelain, M. (2010) Treatment of chronic lymphocytic leukemia with genetically targeted autologous T cells: case report of an unforeseen adverse event in a phase I clinical trial Mol. Ther. 18, 666-668 10.1038/mt.2010.31
    • (2010) Mol. Ther. , vol.18 , pp. 666-668
    • Brentjens, R.1    Yeh, R.2    Bernal, Y.3    Riviere, I.4    Sadelain, M.5
  • 32
    • 77950475517 scopus 로고    scopus 로고
    • Case report of a serious adverse event following the administration of T cells transduced with a chimeric antigen receptor recognizing ERBB2
    • Morgan, R. A., Yang, J. C., Kitano, M., Dudley, M. E., Laurencot, C. M., and Rosenberg, S. A. (2010) Case report of a serious adverse event following the administration of T cells transduced with a chimeric antigen receptor recognizing ERBB2 Mol. Ther. 18, 843-851 10.1038/mt.2010.24
    • (2010) Mol. Ther. , vol.18 , pp. 843-851
    • Morgan, R.A.1    Yang, J.C.2    Kitano, M.3    Dudley, M.E.4    Laurencot, C.M.5    Rosenberg, S.A.6
  • 34
    • 70349964350 scopus 로고    scopus 로고
    • Automated design of synthetic ribosome binding sites to control protein expression
    • Salis, H. M., Mirsky, E. A., and Voigt, C. A. (2009) Automated design of synthetic ribosome binding sites to control protein expression Nat. Biotechnol. 27, 946-950 10.1038/nbt.1568
    • (2009) Nat. Biotechnol. , vol.27 , pp. 946-950
    • Salis, H.M.1    Mirsky, E.A.2    Voigt, C.A.3
  • 35
    • 84937604736 scopus 로고    scopus 로고
    • A portable expression resource for engineering cross-species genetic circuits and pathways
    • Kushwaha, M. and Salis, H. M. (2015) A portable expression resource for engineering cross-species genetic circuits and pathways Nat. Commun. 6, 7832 10.1038/ncomms8832
    • (2015) Nat. Commun. , vol.6 , pp. 7832
    • Kushwaha, M.1    Salis, H.M.2
  • 36
    • 83055184071 scopus 로고    scopus 로고
    • Modulating ectopic gene expression levels by using retroviral vectors equipped with synthetic promoters
    • Ferreira, J. P., Peacock, R. W., Lawhorn, I. E., and Wang, C. L. (2011) Modulating ectopic gene expression levels by using retroviral vectors equipped with synthetic promoters Syst. Synth Biol. 5, 131-138 10.1007/s11693-011-9089-0
    • (2011) Syst. Synth Biol. , vol.5 , pp. 131-138
    • Ferreira, J.P.1    Peacock, R.W.2    Lawhorn, I.E.3    Wang, C.L.4
  • 37
    • 80052436030 scopus 로고    scopus 로고
    • Green fluorescent protein reporter system with transcriptional sequence heterogeneity for monitoring the interferon response
    • Mahmoud, L., Al-Saif, M., Amer, H. M., Sheikh, M., Almajhdi, F. N., and Khabar, K. S. (2011) Green fluorescent protein reporter system with transcriptional sequence heterogeneity for monitoring the interferon response J. Virol 85, 9268-9275 10.1128/JVI.00772-11
    • (2011) J. Virol , vol.85 , pp. 9268-9275
    • Mahmoud, L.1    Al-Saif, M.2    Amer, H.M.3    Sheikh, M.4    Almajhdi, F.N.5    Khabar, K.S.6
  • 38
    • 0020687346 scopus 로고
    • Definition of the Simian Virus-40 Early Promoter Region and Demonstration of a Host Range Bias in the Enhancement Effect of the Simian Virus-40 72-Base-Pair Repeat
    • Byrne, B. J., Davis, M. S., Yamaguchi, J., Bergsma, D. J., and Subramanian, K. N. (1983) Definition of the Simian Virus-40 Early Promoter Region and Demonstration of a Host Range Bias in the Enhancement Effect of the Simian Virus-40 72-Base-Pair Repeat Proc. Natl. Acad. Sci. U. S. A. 80, 721-725 10.1073/pnas.80.3.721
    • (1983) Proc. Natl. Acad. Sci. U. S. A. , vol.80 , pp. 721-725
    • Byrne, B.J.1    Davis, M.S.2    Yamaguchi, J.3    Bergsma, D.J.4    Subramanian, K.N.5
  • 39
    • 0019494989 scopus 로고
    • Analysis of transcriptional regulatory signals of the HSV thymidine kinase gene: Identification of an upstream control region
    • McKnight, S. L., Gavis, E. R., Kingsbury, R., and Axel, R. (1981) Analysis of transcriptional regulatory signals of the HSV thymidine kinase gene: identification of an upstream control region Cell 25, 385-398 10.1016/0092-8674(81)90057-X
    • (1981) Cell , vol.25 , pp. 385-398
    • McKnight, S.L.1    Gavis, E.R.2    Kingsbury, R.3    Axel, R.4
  • 40
    • 0022262015 scopus 로고
    • Control of adenovirus late promoter expression in two human cell lines
    • Lewis, E. D. and Manley, J. L. (1985) Control of adenovirus late promoter expression in two human cell lines Mol. Cell. Biol. 5, 2433-2442 10.1128/MCB.5.9.2433
    • (1985) Mol. Cell. Biol. , vol.5 , pp. 2433-2442
    • Lewis, E.D.1    Manley, J.L.2
  • 41
    • 0027154720 scopus 로고
    • Identification of a novel interleukin-6 response element containing an Ets-binding site and a CRE-like site in the junB promoter
    • Nakajima, K., Kusafuka, T., Takeda, T., Fujitani, Y., Nakae, K., and Hirano, T. (1993) Identification of a novel interleukin-6 response element containing an Ets-binding site and a CRE-like site in the junB promoter Mol. Cell. Biol. 13, 3027-3041 10.1128/MCB.13.5.3027
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 3027-3041
    • Nakajima, K.1    Kusafuka, T.2    Takeda, T.3    Fujitani, Y.4    Nakae, K.5    Hirano, T.6
  • 43
    • 0026325168 scopus 로고
    • TFIID binds in the minor groove of the TATA box
    • Starr, D. B. and Hawley, D. K. (1991) TFIID binds in the minor groove of the TATA box Cell 67, 1231-1240 10.1016/0092-8674(91)90299-E
    • (1991) Cell , vol.67 , pp. 1231-1240
    • Starr, D.B.1    Hawley, D.K.2
  • 47
    • 80051775476 scopus 로고    scopus 로고
    • T cells with chimeric antigen receptors have potent antitumor effects and can establish memory in patients with advanced leukemia
    • Kalos, M., Levine, B. L., Porter, D. L., Katz, S., Grupp, S. A., Bagg, A., and June, C. H. (2011) T cells with chimeric antigen receptors have potent antitumor effects and can establish memory in patients with advanced leukemia Sci. Transl. Med. 3, 95ra73 10.1126/scitranslmed.3002842
    • (2011) Sci. Transl. Med. , vol.3 , pp. 95ra73
    • Kalos, M.1    Levine, B.L.2    Porter, D.L.3    Katz, S.4    Grupp, S.A.5    Bagg, A.6    June, C.H.7
  • 49
    • 84939572921 scopus 로고    scopus 로고
    • Engineering CAR-T cells: Design concepts
    • Srivastava, S. and Riddell, S. R. (2015) Engineering CAR-T cells: Design concepts Trends Immunol. 36, 494-502 10.1016/j.it.2015.06.004
    • (2015) Trends Immunol. , vol.36 , pp. 494-502
    • Srivastava, S.1    Riddell, S.R.2
  • 50
    • 0030176270 scopus 로고    scopus 로고
    • Evidence that a single peptide-MHC complex on a target cell can elicit a cytolytic T cell response
    • Sykulev, Y., Joo, M., Vturina, I., Tsomides, T. J., and Eisen, H. N. (1996) Evidence that a single peptide-MHC complex on a target cell can elicit a cytolytic T cell response Immunity 4, 565-571 10.1016/S1074-7613(00)80483-5
    • (1996) Immunity , vol.4 , pp. 565-571
    • Sykulev, Y.1    Joo, M.2    Vturina, I.3    Tsomides, T.J.4    Eisen, H.N.5
  • 51
    • 2442651482 scopus 로고    scopus 로고
    • T cell killing does not require the formation of a stable mature immunological synapse
    • Purbhoo, M. A., Irvine, D. J., Huppa, J. B., and Davis, M. M. (2004) T cell killing does not require the formation of a stable mature immunological synapse Nat. Immunol. 5, 524-530 10.1038/ni1058
    • (2004) Nat. Immunol. , vol.5 , pp. 524-530
    • Purbhoo, M.A.1    Irvine, D.J.2    Huppa, J.B.3    Davis, M.M.4
  • 52
    • 79959450883 scopus 로고    scopus 로고
    • High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq
    • Schodel, J., Oikonomopoulos, S., Ragoussis, J., Pugh, C. W., Ratcliffe, P. J., and Mole, D. R. (2011) High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq Blood 117, e207-217 10.1182/blood-2010-10-314427
    • (2011) Blood , vol.117 , pp. e207-217
    • Schodel, J.1    Oikonomopoulos, S.2    Ragoussis, J.3    Pugh, C.W.4    Ratcliffe, P.J.5    Mole, D.R.6
  • 53
    • 0344157387 scopus 로고    scopus 로고
    • Construction and characterisation of a functional CD19 specific single chain Fv fragment for immunotherapy of B lineage leukaemia and lymphoma
    • Nicholson, I. C., Lenton, K. A., Little, D. J., Decorso, T., Lee, F. T., Scott, A. M., Zola, H., and Hohmann, A. W. (1997) Construction and characterisation of a functional CD19 specific single chain Fv fragment for immunotherapy of B lineage leukaemia and lymphoma Mol. Immunol. 34, 1157-1165 10.1016/S0161-5890(97)00144-2
    • (1997) Mol. Immunol. , vol.34 , pp. 1157-1165
    • Nicholson, I.C.1    Lenton, K.A.2    Little, D.J.3    Decorso, T.4    Lee, F.T.5    Scott, A.M.6    Zola, H.7    Hohmann, A.W.8
  • 54
    • 0036229427 scopus 로고    scopus 로고
    • Design of HIV vectors for efficient gene delivery into human hematopoietic cells
    • Yam, P. Y., Li, S., Wu, J., Hu, J., Zaia, J. A., and Yee, J. K. (2002) Design of HIV vectors for efficient gene delivery into human hematopoietic cells Mol. Ther. 5, 479-484 10.1006/mthe.2002.0558
    • (2002) Mol. Ther. , vol.5 , pp. 479-484
    • Yam, P.Y.1    Li, S.2    Wu, J.3    Hu, J.4    Zaia, J.A.5    Yee, J.K.6
  • 55
    • 15244342671 scopus 로고    scopus 로고
    • Stimulation of HIF-1alpha, HIF-2alpha, and VEGF by prolyl 4-hydroxylase inhibition in human lung endothelial and epithelial cells
    • Asikainen, T. M., Ahmad, A., Schneider, B. K., Ho, W. B., Arend, M., Brenner, M., Gunzler, V., and White, C. W. (2005) Stimulation of HIF-1alpha, HIF-2alpha, and VEGF by prolyl 4-hydroxylase inhibition in human lung endothelial and epithelial cells Free Radical Biol. Med. 38, 1002-1013 10.1016/j.freeradbiomed.2004.12.004
    • (2005) Free Radical Biol. Med. , vol.38 , pp. 1002-1013
    • Asikainen, T.M.1    Ahmad, A.2    Schneider, B.K.3    Ho, W.B.4    Arend, M.5    Brenner, M.6    Gunzler, V.7    White, C.W.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.