-
2
-
-
0344441259
-
Distinct recruitment of E2F family members to specific e2f-binding sites mediates activation and repression of the E2F1 promoter
-
Araki K, Nakajima Y, Eto K, Ikeda MA. 2003. Distinct recruitment of E2F family members to specific e2f-binding sites mediates activation and repression of the E2F1 promoter. Oncogene 22:7632-7641. doi: 10.1038/sj.onc.1206840
-
(2003)
Oncogene
, vol.22
, pp. 7632-7641
-
-
Araki, K.1
Nakajima, Y.2
Eto, K.3
Ikeda, M.A.4
-
3
-
-
52949090392
-
IKK/NF-kappab signaling pathway inhibits cell-cycle progression by a novel rb-independent suppression system for E2F transcription factors
-
Araki K, Kawauchi K, Tanaka N. 2008. IKK/NF-kappab signaling pathway inhibits cell-cycle progression by a novel rb-independent suppression system for E2F transcription factors. Oncogene 27:5696-5705. doi: 10.1038/onc.2008.184
-
(2008)
Oncogene
, vol.27
, pp. 5696-5705
-
-
Araki, K.1
Kawauchi, K.2
Tanaka, N.3
-
4
-
-
0031057644
-
Nuclear localization of I kappa B alpha promotes active transport of nf-kappa B from the nucleus to the cytoplasm
-
Arenzana-Seisdedos F, Turpin P, Rodriguez M, Thomas D, Hay RT, Virelizier JL, Dargemont C. 1997. Nuclear localization of I kappa B alpha promotes active transport of nf-kappa B from the nucleus to the cytoplasm. Journal of Cell Science 110 (Pt 3):369-378.
-
(1997)
Journal of Cell Science
, vol.110
, pp. 369-378
-
-
Arenzana-Seisdedos, F.1
Turpin, P.2
Rodriguez, M.3
Thomas, D.4
Hay, R.T.5
Virelizier, J.L.6
Dargemont, C.7
-
5
-
-
64849104716
-
Pulsatile stimulation determines timing and specificity of nf-kappab-dependent transcription
-
Ashall L, Horton CA, Nelson DE, Paszek P, Harper CV, Sillitoe K, Ryan S, Spiller DG, Unitt JF, Broomhead DS, Kell DB, Rand DA, Sée V, White MR. 2009. Pulsatile stimulation determines timing and specificity of nf-kappab-dependent transcription. Science 324:242-246. doi: 10.1126/science.1164860
-
(2009)
Science
, vol.324
, pp. 242-246
-
-
Ashall, L.1
Horton, C.A.2
Nelson, D.E.3
Paszek, P.4
Harper, C.V.5
Sillitoe, K.6
Ryan, S.7
Spiller, D.G.8
Unitt, J.F.9
Broomhead, D.S.10
Kell, D.B.11
Rand, D.A.12
Sée, V.13
White, M.R.14
-
6
-
-
84930916877
-
Quantitative dynamic imaging of immune cell signalling using lentiviral gene transfer
-
Bagnall J, Boddington C, Boyd J, Brignall R, Rowe W, Jones NA, Schmidt L, Spiller DG, White MR, Paszek P. 2015. Quantitative dynamic imaging of immune cell signalling using lentiviral gene transfer. Integrative Biology: Quantitative Biosciences From Nano to Macro 7:713-725. doi: 10.1039/C5IB00067J
-
(2015)
Integrative Biology: Quantitative Biosciences from Nano to Macro
, vol.7
, pp. 713-725
-
-
Bagnall, J.1
Boddington, C.2
Boyd, J.3
Brignall, R.4
Rowe, W.5
Jones, N.A.6
Schmidt, L.7
Spiller, D.G.8
White, M.R.9
Paszek, P.10
-
7
-
-
78650373804
-
Network medicine: A network-based approach to human disease. Nature Reviews
-
Barabási AL, Gulbahce N, Loscalzo J. 2011. Network medicine: A network-based approach to human disease. Nature Reviews. Genetics 12:56-68. doi: 10.1038/nrg2918
-
(2011)
Genetics
, vol.12
, pp. 56-68
-
-
Barabási, A.L.1
Gulbahce, N.2
Loscalzo, J.3
-
8
-
-
0037293541
-
NF-kappab-mediated induction of p21(Cip1/waf1) by tumor necrosis factor alpha induces growth arrest and cytoprotection in normal human keratinocytes
-
Basile JR, Eichten A, Zacny V, Münger K. 2003. NF-kappab-mediated induction of p21(cip1/waf1) by tumor necrosis factor alpha induces growth arrest and cytoprotection in normal human keratinocytes. Molecular Cancer Research 1:262-270.
-
(2003)
Molecular Cancer Research
, vol.1
, pp. 262-270
-
-
Basile, J.R.1
Eichten, A.2
Zacny, V.3
Münger, K.4
-
10
-
-
84880803198
-
Control of cell cycle transcription during G1 and S phases. Nature Reviews
-
Bertoli C, Skotheim JM, de Bruin RA. 2013. Control of cell cycle transcription during G1 and S phases. Nature Reviews. Molecular Cell Biology 14:518-528. doi: 10.1038/nrm3629
-
(2013)
Molecular Cell Biology
, vol.14
, pp. 518-528
-
-
Bertoli, C.1
Skotheim, J.M.2
De Bruin, R.A.3
-
11
-
-
84905378578
-
Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells
-
Bieler J, Cannavo R, Gustafson K, Gobet C, Gatfield D, Naef F. 2014. Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells. Molecular Systems Biology 10:739. doi: 10.15252/msb.20145218
-
(2014)
Molecular Systems Biology
, vol.10
, pp. 739
-
-
Bieler, J.1
Cannavo, R.2
Gustafson, K.3
Gobet, C.4
Gatfield, D.5
Naef, F.6
-
12
-
-
0034053967
-
UV-induced stabilization of c-fos and other short-lived mrnas
-
Blattner C, Kannouche P, Litfin M, Bender K, Rahmsdorf HJ, Angulo JF, Herrlich P. 2000. UV-induced stabilization of c-fos and other short-lived mrnas. Molecular and Cellular Biology 20:3616-3625. doi: 10.1128/MCB.20.10.3616-3625.2000
-
(2000)
Molecular and Cellular Biology
, vol.20
, pp. 3616-3625
-
-
Blattner, C.1
Kannouche, P.2
Litfin, M.3
Bender, K.4
Rahmsdorf, H.J.5
Angulo, J.F.6
Herrlich, P.7
-
13
-
-
0034731365
-
Dynamic shuttling of nuclear factor kappa B between the nucleus and cytoplasm as a consequence of inhibitor dissociation
-
Carlotti F, Dower SK, Qwarnstrom EE. 2000. Dynamic shuttling of nuclear factor kappa B between the nucleus and cytoplasm as a consequence of inhibitor dissociation. The Journal of Biological Chemistry 275:41028-41034. doi: 10.1074/jbc.M006179200
-
(2000)
The Journal of Biological Chemistry
, vol.275
, pp. 41028-41034
-
-
Carlotti, F.1
Dower, S.K.2
Qwarnstrom, E.E.3
-
14
-
-
0037137298
-
E2F-1 regulates nuclear factor-kappab activity and cell adhesion: Potential antiinflammatory activity of the transcription factor E2F-1
-
Chen M, Capps C, Willerson JT, Zoldhelyi P. 2002. E2F-1 regulates nuclear factor-kappab activity and cell adhesion: Potential antiinflammatory activity of the transcription factor E2F-1. Circulation 106:2707-2713. doi: 10.1161/01.CIR.0000038706.30661.86
-
(2002)
Circulation
, vol.106
, pp. 2707-2713
-
-
Chen, M.1
Capps, C.2
Willerson, J.T.3
Zoldhelyi, P.4
-
15
-
-
33646382406
-
Transient ikappab kinase activity mediates temporal nf-kappab dynamics in response to a wide range of tumor necrosis factor-alpha doses
-
Cheong R, Bergmann A, Werner SL, Regal J, Hoffmann A, Levchenko A. 2006. Transient ikappab kinase activity mediates temporal nf-kappab dynamics in response to a wide range of tumor necrosis factor-alpha doses. The Journal of Biological Chemistry 281:2945-2950. doi: 10.1074/jbc.M510085200
-
(2006)
The Journal of Biological Chemistry
, vol.281
, pp. 2945-2950
-
-
Cheong, R.1
Bergmann, A.2
Werner, S.L.3
Regal, J.4
Hoffmann, A.5
Levchenko, A.6
-
16
-
-
69749128490
-
Specific activation of the p53 pathway by low dose actinomycin D: A new route to p53 based cyclotherapy
-
Choong ML, Yang H, Lee MA, Lane DP. 2009. Specific activation of the p53 pathway by low dose actinomycin D: A new route to p53 based cyclotherapy. Cell Cycle 8:2810-2818. doi: 10.4161/cc.8.17.9503
-
(2009)
Cell Cycle
, vol.8
, pp. 2810-2818
-
-
Choong, M.L.1
Yang, H.2
Lee, M.A.3
Lane, D.P.4
-
17
-
-
22344449138
-
Opposing roles of e2fs in cell proliferation and death
-
Crosby ME, Almasan A. 2004. Opposing roles of e2fs in cell proliferation and death. Cancer Biology & Therapy 3:1208-1211. doi: 10.4161/cbt.3.12.1494
-
(2004)
Cancer Biology & Therapy
, vol.3
, pp. 1208-1211
-
-
Crosby, M.E.1
Almasan, A.2
-
18
-
-
66149100140
-
GFP-p65 knock-in mice as a tool to study nf-kappab dynamics in vivo
-
De Lorenzi R, Gareus R, Fengler S, Pasparakis M. 2009. GFP-p65 knock-in mice as a tool to study nf-kappab dynamics in vivo. Genesis 47:323-329. doi: 10.1002/dvg.20468
-
(2009)
Genesis
, vol.47
, pp. 323-329
-
-
De Lorenzi, R.1
Gareus, R.2
Fengler, S.3
Pasparakis, M.4
-
19
-
-
78649594167
-
Interactive segmentation of clustered cells via geodesic commute distance and constrained density weighted nystro¨m method. Cytometry
-
Du CJ, Marcello M, Spiller DG, White MR, Bretschneider T. 2010. Interactive segmentation of clustered cells via geodesic commute distance and constrained density weighted nystro¨m method. Cytometry. Part a 77:1137-1147. doi: 10.1002/cyto.a.20993
-
(2010)
Part A
, vol.77
, pp. 1137-1147
-
-
Du, C.J.1
Marcello, M.2
Spiller, D.G.3
White, M.R.4
Bretschneider, T.5
-
20
-
-
84907480712
-
Modeling circadian clock-cell cycle interaction effects on cell population growth rates
-
El Cheikh R, Bernard S, El Khatib N. 2014. Modeling circadian clock-cell cycle interaction effects on cell population growth rates. Journal of Theoretical Biology 363:318-331. doi: 10.1016/j.jtbi.2014.08.008
-
(2014)
Journal of Theoretical Biology
, vol.363
, pp. 318-331
-
-
El Cheikh, R.1
Bernard, S.2
El Khatib, N.3
-
21
-
-
84904012704
-
Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle
-
Feillet C, Krusche P, Tamanini F, Janssens RC, Downey MJ, Martin P, Teboul M, Saito S, Lévi FA, Bretschneider T, van der Horst GT, Delaunay F, Rand DA. 2014. Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle. Proceedings of the National Academy of Sciences of the United States of America 111:9828-9833. doi: 10.1073/pnas.1320474111
-
(2014)
Proceedings of the National Academy of Sciences of the United States of America
, vol.111
, pp. 9828-9833
-
-
Feillet, C.1
Krusche, P.2
Tamanini, F.3
Janssens, R.C.4
Downey, M.J.5
Martin, P.6
Teboul, M.7
Saito, S.8
Lévi, F.A.9
Bretschneider, T.10
Van Der Horst, G.T.11
Delaunay, F.12
Rand, D.A.13
-
22
-
-
0032562720
-
Visualization of single RNA transcripts in situ
-
Femino AM, Fay FS, Fogarty K, Singer RH. 1998. Visualization of single RNA transcripts in situ. Science 280:585-590. doi: 10.1126/science.280.5363.585
-
(1998)
Science
, vol.280
, pp. 585-590
-
-
Femino, A.M.1
Fay, F.S.2
Fogarty, K.3
Singer, R.H.4
-
23
-
-
84866303839
-
A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals
-
Garber M, Yosef N, Goren A, Raychowdhury R, Thielke A, Guttman M, Robinson J, Minie B, Chevrier N, Itzhaki Z, Blecher-Gonen R, Bornstein C, Amann-Zalcenstein D, Weiner A, Friedrich D, Meldrim J, Ram O, Cheng C, Gnirke A, Fisher S, et al. 2012. A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals. Molecular Cell 47:810-812. doi: 10.1016/j.molcel.2012.07.030
-
(2012)
Molecular Cell
, vol.47
, pp. 810-812
-
-
Garber, M.1
Yosef, N.2
Goren, A.3
Raychowdhury, R.4
Thielke, A.5
Guttman, M.6
Robinson, J.7
Minie, B.8
Chevrier, N.9
Itzhaki, Z.10
Blecher-Gonen, R.11
Bornstein, C.12
Amann-Zalcenstein, D.13
Weiner, A.14
Friedrich, D.15
Meldrim, J.16
Ram, O.17
Cheng, C.18
Gnirke, A.19
Fisher, S.20
more..
-
24
-
-
77950346282
-
Immunity, inflammation, and cancer
-
Grivennikov SI, Greten FR, Karin M. 2010. Immunity, inflammation, and cancer. Cell 140:883-899. doi: 10.1016/j.cell.2010.01.025
-
(2010)
Cell
, vol.140
, pp. 883-899
-
-
Grivennikov, S.I.1
Greten, F.R.2
Karin, M.3
-
25
-
-
0032588186
-
NF-kappab controls cell growth and differentiation through transcriptional regulation of cyclin D1
-
Guttridge DC, Albanese C, Reuther JY, Pestell RG, Baldwin AS. 1999. NF-kappab controls cell growth and differentiation through transcriptional regulation of cyclin D1. Molecular and Cellular Biology 19:5785-5799. doi: 10.1128/MCB.19.8.5785
-
(1999)
Molecular and Cellular Biology
, vol.19
, pp. 5785-5799
-
-
Guttridge, D.C.1
Albanese, C.2
Reuther, J.Y.3
Pestell, R.G.4
Baldwin, A.S.5
-
26
-
-
38849199203
-
Shared principles in nf-kappab signaling
-
Hayden MS, Ghosh S. 2008. Shared principles in nf-kappab signaling. Cell 132:344-362. doi: 10.1016/j.cell.2008.01.020
-
(2008)
Cell
, vol.132
, pp. 344-362
-
-
Hayden, M.S.1
Ghosh, S.2
-
27
-
-
0033554897
-
All three ikappab isoforms and most rel family members are stably associated with the ikappab kinase 1/2 complex
-
Heilker R, Freuler F, Pulfer R, Di Padova F, Eder J. 1999. All three ikappab isoforms and most rel family members are stably associated with the ikappab kinase 1/2 complex. European Journal of Biochemistry /FEBS 259:253-261. doi: 10.1046/j.1432-1327.1999.00028.x
-
(1999)
European Journal of Biochemistry /FEBS
, vol.259
, pp. 253-261
-
-
Heilker, R.1
Freuler, F.2
Pulfer, R.3
Di Padova, F.4
Eder, J.5
-
28
-
-
0037417129
-
Divergent gene regulation and growth effects by nf-kappa B in epithelial and mesenchymal cells of human skin
-
Hinata K, Gervin AM, Jennifer Zhang Y, Khavari PA. 2003. Divergent gene regulation and growth effects by nf-kappa B in epithelial and mesenchymal cells of human skin. Oncogene 22:1955-1964. doi: 10.1038/sj.onc.1206198
-
(2003)
Oncogene
, vol.22
, pp. 1955-1964
-
-
Hinata, K.1
Gervin, A.M.2
Jennifer Zhang, Y.3
Khavari, P.A.4
-
29
-
-
0032588170
-
NF-kappab function in growth control: Regulation of cyclin D1 expression and g0/g1-to-s-phase transition
-
Hinz M, Krappmann D, Eichten A, Heder A, Scheidereit C, Strauss M. 1999. NF-kappab function in growth control: Regulation of cyclin D1 expression and g0/g1-to-s-phase transition. Molecular and Cellular Biology 19: 2690-2698. doi: 10.1128/MCB.19.4.2690
-
(1999)
Molecular and Cellular Biology
, vol.19
, pp. 2690-2698
-
-
Hinz, M.1
Krappmann, D.2
Eichten, A.3
Heder, A.4
Scheidereit, C.5
Strauss, M.6
-
30
-
-
0037044575
-
The ikappab-nf-kappab signaling module: Temporal control and selective gene activation
-
Hoffmann A, Levchenko A, Scott ML, Baltimore D. 2002. The ikappab-nf-kappab signaling module: Temporal control and selective gene activation. Science 298:1241-1245. doi: 10.1126/science.1071914
-
(2002)
Science
, vol.298
, pp. 1241-1245
-
-
Hoffmann, A.1
Levchenko, A.2
Scott, M.L.3
Baltimore, D.4
-
31
-
-
84921842476
-
Single-cell variation leads to population invariance in nf-k b signaling dynamics
-
Hughey JJ, Gutschow MV, Bajar BT, Covert MW. 2015. Single-cell variation leads to population invariance in nf-k b signaling dynamics. Molecular Biology of the Cell 26:583-590. doi: 10.1091/mbc.E14-08-1267
-
(2015)
Molecular Biology of the Cell
, vol.26
, pp. 583-590
-
-
Hughey, J.J.1
Gutschow, M.V.2
Bajar, B.T.3
Covert, M.W.4
-
32
-
-
0037238461
-
Fluorescence resonance energy transfer from cyan to yellow fluorescent protein detected by acceptor photobleaching using confocal microscopy and a single laser
-
Karpova TS, Baumann CT, He L, Wu X, Grammer A, Lipsky P, Hager GL, McNally JG. 2003. Fluorescence resonance energy transfer from cyan to yellow fluorescent protein detected by acceptor photobleaching using confocal microscopy and a single laser. Journal of Microscopy 209:56-70. doi: 10.1046/j.1365-2818.2003.01100.x
-
(2003)
Journal of Microscopy
, vol.209
, pp. 56-70
-
-
Karpova, T.S.1
Baumann, C.T.2
He, L.3
Wu, X.4
Grammer, A.5
Lipsky, P.6
Hager, G.L.7
McNally, J.G.8
-
33
-
-
33747388013
-
Ikappabepsilon provides negative feedback to control nf-kappab oscillations, signaling dynamics, and inflammatory gene expression
-
Kearns JD, Basak S, Werner SL, Huang CS, Hoffmann A. 2006. Ikappabepsilon provides negative feedback to control nf-kappab oscillations, signaling dynamics, and inflammatory gene expression. The Journal of Cell Biology 173:659-664. doi: 10.1083/jcb.200510155
-
(2006)
The Journal of Cell Biology
, vol.173
, pp. 659-664
-
-
Kearns, J.D.1
Basak, S.2
Werner, S.L.3
Huang, C.S.4
Hoffmann, A.5
-
34
-
-
35748946937
-
Fluorescence correlation spectroscopy in living cells
-
Kim SA, Heinze KG, Schwille P. 2007. Fluorescence correlation spectroscopy in living cells. Nature Methods 4: 963-973. doi: 10.1038/nmeth1104
-
(2007)
Nature Methods
, vol.4
, pp. 963-973
-
-
Kim, S.A.1
Heinze, K.G.2
Schwille, P.3
-
35
-
-
1642553460
-
To be, or not to be: Nf-kappab is the answer-role of rel/nf-kappab in the regulation of apoptosis
-
Kucharczak J, Simmons MJ, Fan Y, Gélinas C. 2003. To be, or not to be: Nf-kappab is the answer-role of rel/nf-kappab in the regulation of apoptosis. Oncogene 22:8961-8982. doi: 10.1038/sj.onc.1207230
-
(2003)
Oncogene
, vol.22
, pp. 8961-8982
-
-
Kucharczak, J.1
Simmons, M.J.2
Fan, Y.3
Gélinas, C.4
-
36
-
-
0030709410
-
Interaction between cell cycle regulator, E2F-1, and nf-kappab mediates repression of HIV-1 gene transcription
-
Kundu M, Guermah M, Roeder RG, Amini S, Khalili K. 1997. Interaction between cell cycle regulator, E2F-1, and nf-kappab mediates repression of HIV-1 gene transcription. The Journal of Biological Chemistry 272:29468-29474. doi: 10.1074/jbc.272.47.29468
-
(1997)
The Journal of Biological Chemistry
, vol.272
, pp. 29468-29474
-
-
Kundu, M.1
Guermah, M.2
Roeder, R.G.3
Amini, S.4
Khalili, K.5
-
37
-
-
0842332406
-
Dynamics of the p53-mdm2 feedback loop in individual cells
-
Lahav G, Rosenfeld N, Sigal A, Geva-Zatorsky N, Levine AJ, Elowitz MB, Alon U. 2004. Dynamics of the p53-mdm2 feedback loop in individual cells. Nature Genetics 36:147-150. doi: 10.1038/ng1293
-
(2004)
Nature Genetics
, vol.36
, pp. 147-150
-
-
Lahav, G.1
Rosenfeld, N.2
Sigal, A.3
Geva-Zatorsky, N.4
Levine, A.J.5
Elowitz, M.B.6
Alon, U.7
-
38
-
-
77951187551
-
A noisy paracrine signal determines the cellular nf-kappab response to lipopolysaccharide
-
Lee TK, Denny EM, Sanghvi JC, Gaston JE, Maynard ND, Hughey JJ, Covert MW. 2009. A noisy paracrine signal determines the cellular nf-kappab response to lipopolysaccharide. Science Signaling 2: ra65. doi: 10.1126/scisignal.2000599
-
(2009)
Science Signaling
, vol.2
-
-
Lee, T.K.1
Denny, E.M.2
Sanghvi, J.C.3
Gaston, J.E.4
Maynard, N.D.5
Hughey, J.J.6
Covert, M.W.7
-
39
-
-
84896404575
-
Fold change of nuclear nf-kb determines tnf-induced transcription in single cells
-
Lee REC, Walker SR, Savery K, Frank DA, Gaudet S. 2014. Fold change of nuclear nf-kb determines tnf-induced transcription in single cells. Molecular Cell 53:867-879. doi: 10.1016/j.molcel.2014.01.026
-
(2014)
Molecular Cell
, vol.53
, pp. 867-879
-
-
Lee, R.1
Walker, S.R.2
Savery, K.3
Frank, D.A.4
Gaudet, S.5
-
40
-
-
34547838179
-
Genome-wide mapping of rela(P65) binding identifies E2F1 as a transcriptional activator recruited by nf-kappab upon TLR4 activation
-
Lim CA, Yao F, Wong JJ, George J, Xu H, Chiu KP, Sung WK, Lipovich L, Vega VB, Chen J, Shahab A, Zhao XD, Hibberd M, Wei CL, Lim B, Ng HH, Ruan Y, Chin KC. 2007. Genome-wide mapping of rela(p65) binding identifies E2F1 as a transcriptional activator recruited by nf-kappab upon TLR4 activation. Molecular Cell 27: 622-635. doi: 10.1016/j.molcel.2007.06.038
-
(2007)
Molecular Cell
, vol.27
, pp. 622-635
-
-
Lim, C.A.1
Yao, F.2
Wong, J.J.3
George, J.4
Xu, H.5
Chiu, K.P.6
Sung, W.K.7
Lipovich, L.8
Vega, V.B.9
Chen, J.10
Shahab, A.11
Zhao, X.D.12
Hibberd, M.13
Wei, C.L.14
Lim, B.15
Ng, H.H.16
Ruan, Y.17
Chin, K.C.18
-
42
-
-
1942421298
-
Mathematical model of nf-kappab regulatory module
-
Lipniacki T, Paszek P, Brasier AR, Luxon B, Kimmel M. 2004. Mathematical model of nf-kappab regulatory module. Journal of Theoretical Biology 228:195-215. doi: 10.1016/j.jtbi.2004.01.001
-
(2004)
Journal of Theoretical Biology
, vol.228
, pp. 195-215
-
-
Lipniacki, T.1
Paszek, P.2
Brasier, A.R.3
Luxon, B.4
Kimmel, M.5
-
43
-
-
0037352031
-
A highly efficient recombineering-based method for generating conditional knockout mutations
-
Liu P, Jenkins NA, Copeland NG. 2003. A highly efficient recombineering-based method for generating conditional knockout mutations. Genome Research 13:476-484. doi: 10.1101/gr.749203
-
(2003)
Genome Research
, vol.13
, pp. 476-484
-
-
Liu, P.1
Jenkins, N.A.2
Copeland, N.G.3
-
44
-
-
72449164580
-
Circadian timing in cancer treatments
-
Lévi F, Okyar A, Dulong S, Innominato PF, Clairambault J. 2010. Circadian timing in cancer treatments. Annual Review of Pharmacology and Toxicology 50:377-421. doi: 10.1146/annurev.pharmtox.48.113006.094626
-
(2010)
Annual Review of Pharmacology and Toxicology
, vol.50
, pp. 377-421
-
-
Lévi, F.1
Okyar, A.2
Dulong, S.3
Innominato, P.F.4
Clairambault, J.5
-
45
-
-
0142027777
-
Distribution of nf-kappab-binding sites across human chromosome 22
-
Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. 2003. Distribution of nf-kappab-binding sites across human chromosome 22. Proceedings of the National Academy of Sciences of the United States of America 100:12247-12252. doi: 10.1073/pnas.2135255100
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, pp. 12247-12252
-
-
Martone, R.1
Euskirchen, G.2
Bertone, P.3
Hartman, S.4
Royce, T.E.5
Luscombe, N.M.6
Rinn, J.L.7
Nelson, F.K.8
Miller, P.9
Gerstein, M.10
Weissman, S.11
Snyder, M.12
-
46
-
-
43249110701
-
NF-kappab dictates the degradation pathway of ikappabalpha
-
Mathes E, O’Dea EL, Hoffmann A, Ghosh G. 2008. NF-kappab dictates the degradation pathway of ikappabalpha. The EMBO Journal 27:1357-1367. doi: 10.1038/emboj.2008.73
-
(2008)
The EMBO Journal
, vol.27
, pp. 1357-1367
-
-
Mathes, E.1
O’Dea, E.L.2
Hoffmann, A.3
Ghosh, G.4
-
47
-
-
7444254365
-
Oscillations in nf-kappab signaling control the dynamics of gene expression
-
Nelson DE, Ihekwaba AE, Elliott M, Johnson JR, Gibney CA, Foreman BE, Nelson G, See V, Horton CA, Spiller DG, Edwards SW, McDowell HP, Unitt JF, Sullivan E, Grimley R, Benson N, Broomhead D, Kell DB, White MR. 2004. Oscillations in nf-kappab signaling control the dynamics of gene expression. Science 306:704-708. doi: 10.1126/science.1099962
-
(2004)
Science
, vol.306
, pp. 704-708
-
-
Nelson, D.E.1
Ihekwaba, A.E.2
Elliott, M.3
Johnson, J.R.4
Gibney, C.A.5
Foreman, B.E.6
Nelson, G.7
See, V.8
Horton, C.A.9
Spiller, D.G.10
Edwards, S.W.11
McDowell, H.P.12
Unitt, J.F.13
Sullivan, E.14
Grimley, R.15
Benson, N.16
Broomhead, D.17
Kell, D.B.18
White, M.R.19
-
48
-
-
0037087597
-
Multi-parameter analysis of the kinetics of nf-kappab signalling and transcription in single living cells
-
Nelson G, Paraoan L, Spiller DG, Wilde GJ, Browne MA, Djali PK, Unitt JF, Sullivan E, Floettmann E, White MR. 2002. Multi-parameter analysis of the kinetics of nf-kappab signalling and transcription in single living cells. Journal of Cell Science 115:1137-1148.
-
(2002)
Journal of Cell Science
, vol.115
, pp. 1137-1148
-
-
Nelson, G.1
Paraoan, L.2
Spiller, D.G.3
Wilde, G.J.4
Browne, M.A.5
Djali, P.K.6
Unitt, J.F.7
Sullivan, E.8
Floettmann, E.9
White, M.R.10
-
49
-
-
34248997836
-
A homeostatic model of ikappab metabolism to control constitutive nf-kappab activity
-
O’Dea EL, Barken D, Peralta RQ, Tran KT, Werner SL, Kearns JD, Levchenko A, Hoffmann A. 2007. A homeostatic model of ikappab metabolism to control constitutive nf-kappab activity. Molecular Systems Biology 3:111. doi: 10.1038/msb4100148
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 111
-
-
O’Dea, E.L.1
Barken, D.2
Peralta, R.Q.3
Tran, K.T.4
Werner, S.L.5
Kearns, J.D.6
Levchenko, A.7
Hoffmann, A.8
-
50
-
-
79956349485
-
The interplay between nf-kappab and E2F1 coordinately regulates inflammation and metabolism in human cardiac cells
-
Palomer X, Álvarez-Guardia D, Davidson MM, Chan TO, Feldman AM, Vázquez-Carrera M. 2011. The interplay between nf-kappab and E2F1 coordinately regulates inflammation and metabolism in human cardiac cells. PloS One 6:e19724. doi: 10.1371/journal.pone.0019724
-
(2011)
Plos One
, vol.6
-
-
Palomer, X.1
Álvarez-Guardia, D.2
Davidson, M.M.3
Chan, T.O.4
Feldman, A.M.5
Vázquez-Carrera, M.6
-
51
-
-
0034647693
-
Signal-dependent and -independent degradation of free and nf-kappa b-bound ikappabalpha
-
Pando MP, Verma IM. 2000. Signal-dependent and -independent degradation of free and nf-kappa b-bound ikappabalpha. The Journal of Biological Chemistry 275:21278-21286. doi: 10.1074/jbc.M002532200
-
(2000)
The Journal of Biological Chemistry
, vol.275
, pp. 21278-21286
-
-
Pando, M.P.1
Verma, I.M.2
-
52
-
-
77954920254
-
Population robustness arising from cellular heterogeneity
-
Paszek P, Ryan S, Ashall L, Sillitoe K, Harper CV, Spiller DG, Rand DA, White MR. 2010. Population robustness arising from cellular heterogeneity. Proceedings of the National Academy of Sciences of the United States of America 107:11644-11649. doi: 10.1073/pnas.0913798107
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, pp. 11644-11649
-
-
Paszek, P.1
Ryan, S.2
Ashall, L.3
Sillitoe, K.4
Harper, C.V.5
Spiller, D.G.6
Rand, D.A.7
White, M.R.8
-
53
-
-
84860171972
-
Cell biology. Using cell-to-cell variability-a new era in molecular biology
-
Pelkmans L. 2012. Cell biology. using cell-to-cell variability-a new era in molecular biology. Science 336:425-426. doi: 10.1126/science.1222161
-
(2012)
Science
, vol.336
, pp. 425-426
-
-
Pelkmans, L.1
-
54
-
-
33645971047
-
Good cop, bad cop: The different faces of nf-kappab
-
Perkins ND, Gilmore TD. 2006. Good cop, bad cop: The different faces of nf-kappab. Cell Death and Differentiation 13:759-772. doi: 10.1038/sj.cdd.4401838
-
(2006)
Cell Death and Differentiation
, vol.13
, pp. 759-772
-
-
Perkins, N.D.1
Gilmore, T.D.2
-
55
-
-
0033231615
-
E2F-1 potentiates cell death by blocking antiapoptotic signaling pathways
-
Phillips AC, Ernst MK, Bates S, Rice NR, Vousden KH. 1999. E2F-1 potentiates cell death by blocking antiapoptotic signaling pathways. Molecular Cell 4:771-781. doi: 10.1016/S1097-2765(00)80387-1
-
(1999)
Molecular Cell
, vol.4
, pp. 771-781
-
-
Phillips, A.C.1
Ernst, M.K.2
Bates, S.3
Rice, N.R.4
Vousden, K.H.5
-
56
-
-
0035014564
-
E2F-1 induced apoptosis
-
Phillips AC, Vousden KH. 2001. E2F-1 induced apoptosis. Apoptosis 6:173-182. doi: 10.1023/A:1011332625740
-
(2001)
Apoptosis
, vol.6
, pp. 173-182
-
-
Phillips, A.C.1
Vousden, K.H.2
-
57
-
-
7944224713
-
Automatic real-time three-dimensional cell tracking by fluorescence microscopy
-
Rabut G, Ellenberg J. 2004. Automatic real-time three-dimensional cell tracking by fluorescence microscopy. Journal of Microscopy 216:131-137. doi: 10.1111/j.0022-2720.2004.01404.x
-
(2004)
Journal of Microscopy
, vol.216
, pp. 131-137
-
-
Rabut, G.1
Ellenberg, J.2
-
58
-
-
80051982064
-
Return to homeostasis: Downregulation of nf-kb responses
-
Ruland J. 2011. Return to homeostasis: Downregulation of nf-kb responses. Nature Immunology 12:709-714. doi: 10.1038/ni.2055
-
(2011)
Nature Immunology
, vol.12
, pp. 709-714
-
-
Ruland, J.1
-
59
-
-
38849199681
-
Visualizing spatiotemporal dynamics of multicellular cell-cycle progression
-
Sakaue-Sawano A, Kurokawa H, Morimura T, Hanyu A, Hama H, Osawa H, Kashiwagi S, Fukami K, Miyata T, Miyoshi H, Imamura T, Ogawa M, Masai H, Miyawaki A. 2008. Visualizing spatiotemporal dynamics of multicellular cell-cycle progression. Cell 132:487-498. doi: 10.1016/j.cell.2007.12.033
-
(2008)
Cell
, vol.132
, pp. 487-498
-
-
Sakaue-Sawano, A.1
Kurokawa, H.2
Morimura, T.3
Hanyu, A.4
Hama, H.5
Osawa, H.6
Kashiwagi, S.7
Fukami, K.8
Miyata, T.9
Miyoshi, H.10
Imamura, T.11
Ogawa, M.12
Masai, H.13
Miyawaki, A.14
-
60
-
-
0035735452
-
A new phospholipase-c-calcium signalling pathway mediated by cyclic AMP and a rap gtpase
-
Schmidt M, Evellin S, Weernink PA, von Dorp F, Rehmann H, Lomasney JW, Jakobs KH. 2001. A new phospholipase-c-calcium signalling pathway mediated by cyclic AMP and a rap gtpase. Nature Cell Biology 3: 1020-1024. doi: 10.1038/ncb1101-1020
-
(2001)
Nature Cell Biology
, vol.3
, pp. 1020-1024
-
-
Schmidt, M.1
Evellin, S.2
Weernink, P.A.3
Von Dorp, F.4
Rehmann, H.5
Lomasney, J.W.6
Jakobs, K.H.7
-
61
-
-
4444253776
-
Calcium-dependent regulation of the cell cycle via a novel mapk-nf-kappab pathway in swiss 3T3 cells
-
Sée V, Rajala NK, Spiller DG, White MR. 2004. Calcium-dependent regulation of the cell cycle via a novel mapk-nf-kappab pathway in swiss 3T3 cells. The Journal of Cell Biology 166:661-672. doi: 10.1038/nature13437
-
(2004)
The Journal of Cell Biology
, vol.166
, pp. 661-672
-
-
Sée, V.1
Rajala, N.K.2
Spiller, D.G.3
White, M.R.4
-
62
-
-
58549107366
-
Antagonism of E2F-1 regulated bnip3 transcription by NF-B is essential for basal cell survival
-
Shaw J, Yurkova N, Zhang T, Gang H, Aguilar F, Weidman D, Scramstad C, Weisman H, Kirshenbaum LA. 2008. Antagonism of E2F-1 regulated bnip3 transcription by NF-B is essential for basal cell survival. Proceedings of the National Academy of Sciences of the United States of America 105:20734-20739. doi: 10.1073/pnas.0807735105
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, pp. 20734-20739
-
-
Shaw, J.1
Yurkova, N.2
Zhang, T.3
Gang, H.4
Aguilar, F.5
Weidman, D.6
Scramstad, C.7
Weisman, H.8
Kirshenbaum, L.A.9
-
63
-
-
33845446475
-
Automated tracking of gene expression in individual cells and cell compartments. Journal of the Royal Society
-
Shen H, Nelson G, Nelson DE, Kennedy S, Spiller DG, Griffiths T, Paton N, Oliver SG, White MR, Kell DB. 2006. Automated tracking of gene expression in individual cells and cell compartments. Journal of the Royal Society, Interface /the Royal Society 3:787-794. doi: 10.1098/rsif.2006.0137
-
(2006)
Interface /The Royal Society
, vol.3
, pp. 787-794
-
-
Shen, H.1
Nelson, G.2
Nelson, D.E.3
Kennedy, S.4
Spiller, D.G.5
Griffiths, T.6
Paton, N.7
Oliver, S.G.8
White, M.R.9
Kell, D.B.10
-
65
-
-
70349687069
-
Sustained oscillations of nf-kappab produce distinct genome scanning and gene expression profiles
-
Sung MH, Salvatore L, De Lorenzi R, Indrawan A, Pasparakis M, Hager GL, Bianchi ME, Agresti A. 2009. Sustained oscillations of nf-kappab produce distinct genome scanning and gene expression profiles. PloS One 4:e7163. doi: 10.1371/journal.pone.0007163
-
(2009)
Plos One
, vol.4
-
-
Sung, M.H.1
Salvatore, L.2
De Lorenzi, R.3
Indrawan, A.4
Pasparakis, M.5
Hager, G.L.6
Bianchi, M.E.7
Agresti, A.8
-
66
-
-
0036279279
-
E2F1 and c-myc potentiate apoptosis through inhibition of nf-kappab activity that facilitates mnsod-mediated ROS elimination
-
Tanaka H, Matsumura I, Ezoe S, Satoh Y, Sakamaki T, Albanese C, Machii T, Pestell RG, Kanakura Y. 2002. E2F1 and c-myc potentiate apoptosis through inhibition of nf-kappab activity that facilitates mnsod-mediated ROS elimination. Molecular Cell 9:1017-1029. doi: 10.1016/S1097-2765(02)00522-1
-
(2002)
Molecular Cell
, vol.9
, pp. 1017-1029
-
-
Tanaka, H.1
Matsumura, I.2
Ezoe, S.3
Satoh, Y.4
Sakamaki, T.5
Albanese, C.6
Machii, T.7
Pestell, R.G.8
Kanakura, Y.9
-
67
-
-
77954541844
-
Single-cell nf-kappab dynamics reveal digital activation and analogue information processing
-
Tay S, Hughey JJ, Lee TK, Lipniacki T, Quake SR, Covert MW. 2010. Single-cell nf-kappab dynamics reveal digital activation and analogue information processing. Nature 466:267-271. doi: 10.1038/nature09145
-
(2010)
Nature
, vol.466
, pp. 267-271
-
-
Tay, S.1
Hughey, J.J.2
Lee, T.K.3
Lipniacki, T.4
Quake, S.R.5
Covert, M.W.6
-
68
-
-
58849146288
-
Distinct mechanisms act in concert to mediate cell cycle arrest
-
Toettcher JE, Loewer A, Ostheimer GJ, Yaffe MB, Tidor B, Lahav G. 2009. Distinct mechanisms act in concert to mediate cell cycle arrest. Proceedings of the National Academy of Sciences of the United States of America 106. doi: 10.1073/pnas.0806196106
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, pp. 106
-
-
Toettcher, J.E.1
Loewer, A.2
Ostheimer, G.J.3
Yaffe, M.B.4
Tidor, B.5
Lahav, G.6
-
69
-
-
27544431579
-
Involvement of E2F transcription factor family in cancer
-
Tsantoulis PK, Gorgoulis VG. 2005. Involvement of E2F transcription factor family in cancer. European Journal of Cancer 41:2403-2414. doi: 10.1016/j.ejca.2005.08.005
-
(2005)
European Journal of Cancer
, vol.41
, pp. 2403-2414
-
-
Tsantoulis, P.K.1
Gorgoulis, V.G.2
-
70
-
-
77955986202
-
Physiological levels of tnfalpha stimulation induce stochastic dynamics of nf-kappab responses in single living cells
-
Turner DA, Paszek P, Woodcock DJ, Nelson DE, Horton CA, Wang Y, Spiller DG, Rand DA, White MR, Harper CV. 2010. Physiological levels of tnfalpha stimulation induce stochastic dynamics of nf-kappab responses in single living cells. Journal of Cell Science 123. doi: 10.1242/jcs.069641
-
(2010)
Journal of Cell Science
, pp. 123
-
-
Turner, D.A.1
Paszek, P.2
Woodcock, D.J.3
Nelson, D.E.4
Horton, C.A.5
Wang, Y.6
Spiller, D.G.7
Rand, D.A.8
White, M.R.9
Harper, C.V.10
-
71
-
-
26644453335
-
Simple and highly efficient BAC recombineering using galk selection
-
Warming S, Costantino N, Court DL, Jenkins NA, Copeland NG. 2005. Simple and highly efficient BAC recombineering using galk selection. Nucleic Acids Research 33:e36. doi: 10.1093/nar/gni035
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Warming, S.1
Costantino, N.2
Court, D.L.3
Jenkins, N.A.4
Copeland, N.G.5
-
72
-
-
11144311974
-
Bioluminescence imaging of individual fibroblasts reveals persistent, independently phased circadian rhythms of clock gene expression
-
Welsh DK, Yoo SH, Liu AC, Takahashi JS, Kay SA. 2004. Bioluminescence imaging of individual fibroblasts reveals persistent, independently phased circadian rhythms of clock gene expression. Current Biology 14:2289-2295. doi: 10.1016/j.cub.2004.11.057
-
(2004)
Current Biology
, vol.14
, pp. 2289-2295
-
-
Welsh, D.K.1
Yoo, S.H.2
Liu, A.C.3
Takahashi, J.S.4
Kay, S.A.5
-
73
-
-
69749115988
-
Imaging of firefly luciferase expresssion in single mammalian cells using high sensitivity charge-coupled device cameras. Technique 2:194-201. White MR, Spiller DG. 2009. Is frequency-encoding of information a major theme in cellular processes?
-
White MR, Morse J, Boniszewski ZA, Mundy CR, Brady MA, Chiswell DJ. 1990. Imaging of firefly luciferase expresssion in single mammalian cells using high sensitivity charge-coupled device cameras. Technique 2:194-201. White MR, Spiller DG. 2009. Is frequency-encoding of information a major theme in cellular processes? Cell Cycle 8:2677-2678. doi: 10.4161/cc.8.17.9304
-
(1990)
Cell Cycle
, vol.8
, pp. 2677-2678
-
-
White, M.R.1
Morse, J.2
Boniszewski, Z.A.3
Mundy, C.R.4
Brady, M.A.5
Chiswell, D.J.6
-
74
-
-
43849083417
-
Sticking together? Falling apart? Exploring the dynamics of the interactome
-
Wilkins MR, Kummerfeld SK. 2008. Sticking together? Falling apart? Exploring the dynamics of the interactome. Trends in Biochemical Sciences 33:195-200. doi: 10.1016/j.tibs.2008.03.001
-
(2008)
Trends in Biochemical Sciences
, vol.33
, pp. 195-200
-
-
Wilkins, M.R.1
Kummerfeld, S.K.2
-
75
-
-
84937566091
-
Computational models of the NF-KB signalling pathway
-
Williams R, Timmis J, Qwarnstrom E. 2014. Computational models of the NF-KB signalling pathway. Computation 2:131-158. doi: 10.3390/computation2040131
-
(2014)
Computation
, vol.2
, pp. 131-158
-
-
Williams, R.1
Timmis, J.2
Qwarnstrom, E.3
-
76
-
-
35949000033
-
A comprehensive chip-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members
-
Xu X, Bieda M, Jin VX, Rabinovich A, Oberley MJ, Green R, Farnham PJ. 2007. A comprehensive chip-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members. Genome Research 17:1550-1561. doi: 10.1101/gr.6783507
-
(2007)
Genome Research
, vol.17
, pp. 1550-1561
-
-
Xu, X.1
Bieda, M.2
Jin, V.X.3
Rabinovich, A.4
Oberley, M.J.5
Green, R.6
Farnham, P.J.7
-
77
-
-
77949826561
-
Circadian gating of the cell cycle revealed in single cyanobacterial cells
-
Yang Q, Pando BF, Dong G, Golden SS, van Oudenaarden A. 2010. Circadian gating of the cell cycle revealed in single cyanobacterial cells. Science 327:1522-1526. doi: 10.1126/science.1181759
-
(2010)
Science
, vol.327
, pp. 1522-1526
-
-
Yang, Q.1
Pando, B.F.2
Dong, G.3
Golden, S.S.4
Van Oudenaarden, A.5
-
78
-
-
84897034879
-
High-throughput analysis of nf-kb dynamics in single cells reveals basal nuclear localization of nf-kb and spontaneous activation of oscillations
-
Zambrano S, Bianchi ME, Agresti A. 2014. High-throughput analysis of nf-kb dynamics in single cells reveals basal nuclear localization of nf-kb and spontaneous activation of oscillations. PloS One 9:e90104. doi: 10.1371/journal.pone.0090104
-
(2014)
Plos One
, vol.9
-
-
Zambrano, S.1
Bianchi, M.E.2
Agresti, A.3
-
79
-
-
0033002197
-
Bridging the gap: Composition, regulation, and physiological function of the ikappab kinase complex
-
Zandi E, Karin M. 1999. Bridging the gap: Composition, regulation, and physiological function of the ikappab kinase complex. Molecular and Cellular Biology 19:4547-4551. doi: 10.1128/MCB.19.7.4547
-
(1999)
Molecular and Cellular Biology
, vol.19
, pp. 4547-4551
-
-
Zandi, E.1
Karin, M.2
-
80
-
-
79958019911
-
Quantification of activated NF kappab/rela complexes using ssdna aptamer affinity stable isotope dilution selective reaction monitoring mass spectrometry
-
Zhao Y, Widen SG, Jamaluddin M, Tian B, Wood TG, Edeh CB, Brasier AR. 2011. Quantification of activated NF kappab/rela complexes using ssdna aptamer affinity stable isotope dilution selective reaction monitoring mass spectrometry. Molecular & Cellular Proteomics. doi: 10.1074/mcp.m111.008771
-
(2011)
Molecular & Cellular Proteomics
-
-
Zhao, Y.1
Widen, S.G.2
Jamaluddin, M.3
Tian, B.4
Wood, T.G.5
Edeh, C.B.6
Brasier, A.R.7
|