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Volumn 3, Issue 11, 2006, Pages 787-794

Automated tracking of gene expression in individual cells and cell compartments

Author keywords

High content screening; Image analysis; Image processing; NF B signalling; Single cell analysis

Indexed keywords

IMMUNOGLOBULIN ENHANCER BINDING PROTEIN;

EID: 33845446475     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2006.0137     Document Type: Article
Times cited : (59)

References (27)
  • 1
    • 0346158531 scopus 로고    scopus 로고
    • High content screening applied to large-scale cell biology
    • (doi:10.1016/j.tibtech.2003.10.012)
    • Abraham, V. C., Taylor, D. L. & Haskins, J. R. 2004 High content screening applied to large-scale cell biology. Trends Biotechnol. 22, 15-22. (doi:10.1016/j.tibtech.2003.10.012)
    • (2004) Trends Biotechnol. , vol.22 , pp. 15-22
    • Abraham, V.C.1    Taylor, D.L.2    Haskins, J.R.3
  • 2
    • 31744445957 scopus 로고    scopus 로고
    • Microarrays of lentiviruses for gene function screens in immortalized and primary cells
    • (doi:10.1038/nmeth848)
    • Bailey, S. N., Ali, S. M., Carpenter, A. E., Higgins, C. O. & Sabatini, D. M. 2006 Microarrays of lentiviruses for gene function screens in immortalized and primary cells. Nat. Methods 3, 117-122. (doi:10.1038/nmeth848)
    • (2006) Nat. Methods , vol.3 , pp. 117-122
    • Bailey, S.N.1    Ali, S.M.2    Carpenter, A.E.3    Higgins, C.O.4    Sabatini, D.M.5
  • 4
    • 0346728473 scopus 로고    scopus 로고
    • Systematic genome-wide screens of gene function
    • (doi:10.1038/nrg1248)
    • Carpenter, A. E. & Sabatini, D. M. 2004 Systematic genome-wide screens of gene function. Nat. Rev. Genet. 5, 11-22. (doi:10.1038/nrg1248)
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 11-22
    • Carpenter, A.E.1    Sabatini, D.M.2
  • 5
    • 0029832083 scopus 로고    scopus 로고
    • Flow cytometry and cell sorting of heterogeneous microbial populations: The importance of single-cell analysis
    • Davey, H. M. & Kell, D. B. 1996 Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analysis. Microbiol. Rev. 60, 641-696.
    • (1996) Microbiol. Rev. , vol.60 , pp. 641-696
    • Davey, H.M.1    Kell, D.B.2
  • 7
    • 0042707768 scopus 로고    scopus 로고
    • Screening for content - The evolution of high throughput
    • (doi:10.1038/nbt0803-859)
    • Dove, A. 2003 Screening for content - the evolution of high throughput. Nat. Biotechnol. 21, 859-864. (doi:10.1038/nbt0803-859)
    • (2003) Nat. Biotechnol. , vol.21 , pp. 859-864
    • Dove, A.1
  • 9
    • 28544447780 scopus 로고    scopus 로고
    • The open microscopy environment (OME) data model and XML file: Open tools for informatics and quantitative analysis in biological imaging
    • (doi:10.1186/gb-2005-6-5-r47)
    • Goldberg, I. G. et al. 2005 The open microscopy environment (OME) data model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome Biol. 6, R47. (doi:10.1186/gb-2005-6-5-r47)
    • (2005) Genome Biol. , vol.6
    • Goldberg, I.G.1
  • 11
    • 0032136153 scopus 로고    scopus 로고
    • CONDENSATION - Conditional density propagation for visual tracking
    • (doi:10.1023/A:1008078328650)
    • Isard, M. & Blake, A. 1998 CONDENSATION - conditional density propagation for visual tracking. Int. J. Comput. Vis. 29, 5-28. (doi:10.1023/A:1008078328650)
    • (1998) Int. J. Comput. Vis. , vol.29 , pp. 5-28
    • Isard, M.1    Blake, A.2
  • 13
    • 34250090755 scopus 로고
    • Snakes: Active contour models
    • (doi:10.1007/BF00133570)
    • Kass, M., Witkin, A. & Terzopoulos, D. 1987 Snakes: active contour models. Int. J. Comput. Vis. 1, 321-331. (doi:10.1007/BF00133570)
    • (1987) Int. J. Comput. Vis. , vol.1 , pp. 321-331
    • Kass, M.1    Witkin, A.2    Terzopoulos, D.3
  • 14
    • 33644959172 scopus 로고    scopus 로고
    • Metabolomics, modelling and machine learning in systems biology: Towards an understanding of the languages of cells. The 2005 Theodor Bücher lecture
    • (doi:10.1111/j.1742-4658.2006.05136.x)
    • Kell, D. B. 2006 Metabolomics, modelling and machine learning in systems biology: towards an understanding of the languages of cells. The 2005 Theodor Bücher lecture. FEBS J. 273, 873-894. (doi:10.1111/j.1742-4658.2006.05136. x)
    • (2006) FEBS J. , vol.273 , pp. 873-894
    • Kell, D.B.1
  • 15
    • 12344250982 scopus 로고    scopus 로고
    • Small-molecule screening and profiling by using automated microscopy
    • (doi:10.1002/cbic.200400272)
    • Mitchison, T. J. 2005 Small-molecule screening and profiling by using automated microscopy. Chembiochem 6, 33-39. (doi:10.1002/cbic.200400272)
    • (2005) Chembiochem , vol.6 , pp. 33-39
    • Mitchison, T.J.1
  • 16
    • 0037087597 scopus 로고    scopus 로고
    • Multi-parameter analysis of the kinetics of NF-κB signalling and transcription in single living cells
    • Nelson, G. et al. 2002a Multi-parameter analysis of the kinetics of NF-κB signalling and transcription in single living cells. J. Cell Sci. 115, 1137-1148.
    • (2002) J. Cell Sci. , vol.115 , pp. 1137-1148
    • Nelson, G.1
  • 17
    • 0037021422 scopus 로고    scopus 로고
    • Dynamic analysis of STAT6 signalling in living cells
    • (doi:10.1016/S0014-5793(02)03672-4)
    • Nelson, G., Wilde, G. J., Spiller, D. G., Sullivan, E., Unitt, J. F. & White, M. R. 2002b Dynamic analysis of STAT6 signalling in living cells. FEBS Lett. 532, 188-192. (doi:10.1016/S0014-5793(02)03672-4)
    • (2002) FEBS Lett. , vol.532 , pp. 188-192
    • Nelson, G.1    Wilde, G.J.2    Spiller, D.G.3    Sullivan, E.4    Unitt, J.F.5    White, M.R.6
  • 18
    • 0037484097 scopus 로고    scopus 로고
    • NF-kappaB signalling is inhibited by glucocorticoid receptor and STAT6 via distinct mechanisms
    • (doi:10.1242/jcs.00461)
    • Nelson, G., Wilde, G. J., Spiller, D. G., Kennedy, S. M., Ray, D. W., Sullivan, E., Unitt, J. F. & White, M. R. 2003 NF-kappaB signalling is inhibited by glucocorticoid receptor and STAT6 via distinct mechanisms. J. Cell Sci. 116, 2495-2503. (doi:10.1242/jcs.00461)
    • (2003) J. Cell Sci. , vol.116 , pp. 2495-2503
    • Nelson, G.1    Wilde, G.J.2    Spiller, D.G.3    Kennedy, S.M.4    Ray, D.W.5    Sullivan, E.6    Unitt, J.F.7    White, M.R.8
  • 19
    • 7444254365 scopus 로고    scopus 로고
    • Oscillations in NF-κB signalling control the dynamics of target gene expression
    • (doi:10.1126/science.1099962)
    • Nelson, D. E. et al. 2004 Oscillations in NF-κB signalling control the dynamics of target gene expression. Science 306, 704-708. (doi:10.1126/science.1099962)
    • (2004) Science , vol.306 , pp. 704-708
    • Nelson, D.E.1
  • 20
    • 0037428077 scopus 로고    scopus 로고
    • An adaptive color-based particle filter
    • (doi:10.1016/S0262-8856(02)00129-4)
    • Nummiaro, K., Koller-Meier, E. & Van Gool, L. 2003 An adaptive color-based particle filter. Image Vis. Comput. 21, 99-110. (doi:10.1016/S0262- 8856(02)00129-4)
    • (2003) Image Vis. Comput. , vol.21 , pp. 99-110
    • Nummiaro, K.1    Koller-Meier, E.2    Van Gool, L.3
  • 21
    • 0002537922 scopus 로고    scopus 로고
    • Algorithm 808: ARFIT - A Matlab package for the estimation of parameters and eigenmodes of multivariate autoregressive models
    • (doi:10.1145/382043.382316)
    • Schneider, T. & Neumaier, A. 2001 Algorithm 808: ARFIT - a Matlab package for the estimation of parameters and eigenmodes of multivariate autoregressive models. ACM Trans. Math. Software 27, 58-65. (doi:10.1145/382043. 382316)
    • (2001) ACM Trans. Math. Software , vol.27 , pp. 58-65
    • Schneider, T.1    Neumaier, A.2
  • 22
    • 33748687772 scopus 로고    scopus 로고
    • Automatic tracking of biological cells and compartments using particle filters and active contours
    • (doi:10.1016/j.chemolab.2005.07.007)
    • Shen, H., Nelson, G., Kennedy, S., Nelson, D., Johnson, J., Spiller, D., White, M. R. H. & Kell, D. B. 2006 Automatic tracking of biological cells and compartments using particle filters and active contours. Chemometr. Intell. Lab. Syst. 82, 276-282. (doi:10.1016/j.chemolab.2005.07.007)
    • (2006) Chemometr. Intell. Lab. Syst. , vol.82 , pp. 276-282
    • Shen, H.1    Nelson, G.2    Kennedy, S.3    Nelson, D.4    Johnson, J.5    Spiller, D.6    White, M.R.H.7    Kell, D.B.8
  • 23
    • 0037418911 scopus 로고    scopus 로고
    • Informatics and quantitative analysis in biological imaging
    • (doi:10.1126/science.1082602)
    • Swedlow, J. R., Goldberg, I., Brauner, E. & Sorger, P. K. 2003 Informatics and quantitative analysis in biological imaging. Science 300, 100-102. (doi:10.1126/science.1082602)
    • (2003) Science , vol.300 , pp. 100-102
    • Swedlow, J.R.1    Goldberg, I.2    Brauner, E.3    Sorger, P.K.4
  • 24
    • 0031663369 scopus 로고    scopus 로고
    • The green fluorescent protein
    • (doi:10.1146/annurev.biochem.67.1.509)
    • Tsien, R. Y. 1998 The green fluorescent protein. Annu. Rev. Biochem. 67, 509-544. (doi:10.1146/annurev.biochem.67.1.509)
    • (1998) Annu. Rev. Biochem. , vol.67 , pp. 509-544
    • Tsien, R.Y.1
  • 25
    • 0036891794 scopus 로고    scopus 로고
    • A multiphase level set framework for image segmentation using the Mumford and Shah model
    • (doi:10.1023/A:1020874308076)
    • Vese, L. A. & Chan, T. F. 2002 A multiphase level set framework for image segmentation using the Mumford and Shah model. Int. J. Comput. Vis. 50, 271-293. (doi:10.1023/A:1020874308076)
    • (2002) Int. J. Comput. Vis. , vol.50 , pp. 271-293
    • Vese, L.A.1    Chan, T.F.2
  • 26
    • 17644415317 scopus 로고    scopus 로고
    • RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogaster cells
    • (doi:10.1038/nmeth711)
    • Wheeler, D. B., Bailey, S. N., Guertin, D. A., Carpenter, A. E., Higgins, C. O. & Sabatini, D. M. 2004 RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogaster cells. Nat. Methods 1, 127-132. (doi:10.1038/nmeth711)
    • (2004) Nat. Methods , vol.1 , pp. 127-132
    • Wheeler, D.B.1    Bailey, S.N.2    Guertin, D.A.3    Carpenter, A.E.4    Higgins, C.O.5    Sabatini, D.M.6
  • 27
    • 0032291262 scopus 로고    scopus 로고
    • Generalized gradient vector flow external forces for active contours
    • (doi:10.1016/S0165-1684(98)00140-6)
    • Xu, C. & Prince, J. L. 1998 Generalized gradient vector flow external forces for active contours. Signal Process. 71, 131-139. (doi:10.1016/S0165- 1684(98)00140-6)
    • (1998) Signal Process. , vol.71 , pp. 131-139
    • Xu, C.1    Prince, J.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.