메뉴 건너뛰기




Volumn 9, Issue 2, 2016, Pages 119-149

Next-generation sequencing revolution through big data analytics

Author keywords

Big data; cloud computing; genomics; Hadoop; next generation sequencing

Indexed keywords


EID: 84966709077     PISSN: 21553769     EISSN: 21553777     Source Type: Journal    
DOI: 10.1080/21553769.2016.1178180     Document Type: Article
Times cited : (43)

References (124)
  • 1
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • M.Aaron, M.Hanna, E.Banks, A.Sivachenko, K.Cibulskis, A.Kernytsky, K.Garimella. 2010. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20(9):1297–1303. doi: 10.1101/gr.107524.110
    • (2010) Genome Res , vol.20 , Issue.9 , pp. 1297-1303
    • Aaron, M.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6    Garimella, K.7
  • 2
    • 84866860221 scopus 로고    scopus 로고
    • Methylkit: a comprehensive R package for the analysis of genome-wide DNA methylation profile
    • A.Akalin, M.Kormaksson, S.Li, F.E.Garrett-Bakelman, M.E.Figueroa, A.Melnick, C.E.Mason. 2012. Methylkit: a comprehensive R package for the analysis of genome-wide DNA methylation profile. Genome Biol. 13:R87. 10.1186/gb-2012-13-10-r87 doi: 10.1186/gb-2012-13-10-r87
    • (2012) Genome Biol , vol.13 , pp. 87
    • Akalin, A.1    Kormaksson, M.2    Li, S.3    Garrett-Bakelman, F.E.4    Figueroa, M.E.5    Melnick, A.6    Mason, C.E.7
  • 3
    • 84899639397 scopus 로고    scopus 로고
    • On the middle ground between open source and commercial software – the case of the Newbler program
    • N.J.Alexander. 2014. On the middle ground between open source and commercial software – the case of the Newbler program. Genome Biol. 15(4):113. doi: 10.1186/gb4173
    • (2014) Genome Biol , vol.15 , Issue.4 , pp. 113
    • Alexander, N.J.1
  • 4
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-seq
    • M.Ali, B.A.Williams, K.McCue, L.Schaeffer, B.Wold. 2008. Mapping and quantifying mammalian transcriptomes by RNA-seq. Nat Methods. 5(7):621–628. doi: 10.1038/nmeth.1226
    • (2008) Nat Methods , vol.5 , Issue.7 , pp. 621-628
    • Ali, M.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 5
    • 84855274663 scopus 로고    scopus 로고
    • Meeting the demand for crop production: the challenge of yield decline in crops grown in short rotations
    • B.J.Amanda, G.D.Bending, D.Chandler, S.Hilton, P.Mills. 2012. Meeting the demand for crop production: the challenge of yield decline in crops grown in short rotations. Biol Rev. 87:52–71.
    • (2012) Biol Rev , vol.87 , pp. 52-71
    • Amanda, B.J.1    Bending, G.D.2    Chandler, D.3    Hilton, S.4    Mills, P.5
  • 6
    • 0035966319 scopus 로고    scopus 로고
    • microRNAs: tiny regulators with great potential
    • V.Ambros. 2001. microRNAs: tiny regulators with great potential. Cell. 107:823–826. doi: 10.1016/S0092-8674(01)00616-X
    • (2001) Cell , vol.107 , pp. 823-826
    • Ambros, V.1
  • 7
    • 84922353597 scopus 로고    scopus 로고
    • Comparison of eleven methods for genomic DNA extraction suitable for large-scale whole-genome genotyping and long-term DNA banking using blood samples
    • P.Androniki, C.I.Dovas, G.Bramis, T.Lazou, C.L.Russel, G.Arsenos, G.Banos. 2015. Comparison of eleven methods for genomic DNA extraction suitable for large-scale whole-genome genotyping and long-term DNA banking using blood samples. PLoS ONE. 10(1).
    • (2015) PLoS ONE , vol.10 , Issue.1
    • Androniki, P.1    Dovas, C.I.2    Bramis, G.3    Lazou, T.4    Russel, C.L.5    Arsenos, G.6    Banos, G.7
  • 9
  • 10
    • 2642580889 scopus 로고    scopus 로고
    • Genomes for medicine
    • D.R.Bentley. 2004. Genomes for medicine. Nature. 429:440–445. 10.1038/nature02622 doi: 10.1038/nature02622
    • (2004) Nature , vol.429 , pp. 440-445
    • Bentley, D.R.1
  • 11
    • 84977441713 scopus 로고    scopus 로고
    • Sequencing-by-synthesis: explaining the illumina sequencing technology, Next Generation Sequencing
    • S.M.Brown. 2012. Sequencing-by-synthesis: explaining the illumina sequencing technology. Next Generation Sequencing.
    • (2012)
    • Brown, S.M.1
  • 12
    • 85006122803 scopus 로고    scopus 로고
    • High-throughput sequencing, a versatile weapon to support genome-based diagnosis in infectious diseases: applications to clinical bacteriology
    • S.Caboche, C.Audebert, D.Hot. 2014. High-throughput sequencing, a versatile weapon to support genome-based diagnosis in infectious diseases: applications to clinical bacteriology. Pathog. 3(2):258–279. 10.3390/pathogens3020258 doi: 10.3390/pathogens3020258
    • (2014) Pathog , vol.3 , Issue.2 , pp. 258-279
    • Caboche, S.1    Audebert, C.2    Hot, D.3
  • 13
    • 84874677498 scopus 로고    scopus 로고
    • A comparison of methods for differential expression analysis of RNA-seq data
    • S.Charlotte, M.Delorenzi. 2013. A comparison of methods for differential expression analysis of RNA-seq data. BMC Bioinformatics. 14(1):91. doi: 10.1186/1471-2105-14-91
    • (2013) BMC Bioinformatics , vol.14 , Issue.1 , pp. 91
    • Charlotte, S.1    Delorenzi, M.2
  • 14
    • 84977467991 scopus 로고    scopus 로고
    • Local assembly and pre-mRNA splicing analyses by high-throughput sequencing data. Graduate Theses and Dissertations. p. 12819
    • H.-C.Chou. 2012. Local assembly and pre-mRNA splicing analyses by high-throughput sequencing data. Graduate Theses and Dissertations. p. 12819.
    • (2012)
    • Chou, H.-C.1
  • 16
    • 84903516888 scopus 로고    scopus 로고
    • RNA-seq using next generation sequencing
    • D.C.Corney. 2013. RNA-seq using next generation sequencing. Mater Methods. 3:203. doi: 10.13070/mm.en.3.203
    • (2013) Mater Methods , vol.3 , pp. 203
    • Corney, D.C.1
  • 17
    • 84977459912 scopus 로고    scopus 로고
    • Big data in genomics: challenges and solutions, G.I.T. Laboratory Journal
    • F.F.Costa. 2012. Big data in genomics: challenges and solutions. G.I.T. Laboratory Journal.
    • (2012)
    • Costa, F.F.1
  • 19
    • 84856100712 scopus 로고    scopus 로고
    • Some hazards are more attractive than others: drivers of varying experience respond differently to different types of hazard
    • C.David, P.Chapman, S.Trawley, L.Collins, E.Van Loon, B.Andrews, G.Underwood. 2012. Some hazards are more attractive than others: drivers of varying experience respond differently to different types of hazard. Accident Anal Prev. 45:600–609. doi: 10.1016/j.aap.2011.09.049
    • (2012) Accident Anal Prev , vol.45 , pp. 600-609
    • David, C.1    Chapman, P.2    Trawley, S.3    Collins, L.4    Van Loon, E.5    Andrews, B.6    Underwood, G.7
  • 21
    • 84872032385 scopus 로고    scopus 로고
    • Transcriptome-wide mapping of N6-methyladenosine by m6A-seq based on immunocapturing and massively parallel sequencing
    • D.Dominissini, S.Moshitch-Moshkovitz, M.Salmon-Divon, N.Amariglio, G.Rechavi. 2013. Transcriptome-wide mapping of N6-methyladenosine by m6A-seq based on immunocapturing and massively parallel sequencing. Nat Protoc. 8:176–189. doi: 10.1038/nprot.2012.148
    • (2013) Nat Protoc , vol.8 , pp. 176-189
    • Dominissini, D.1    Moshitch-Moshkovitz, S.2    Salmon-Divon, M.3    Amariglio, N.4    Rechavi, G.5
  • 22
    • 84977454599 scopus 로고    scopus 로고
    • Cloudera releases next-generation Hadoop platform. Information Week
    • H.Doug. 2012. Cloudera releases next-generation Hadoop platform. Information Week.
    • (2012)
    • Doug, H.1
  • 23
    • 84901307314 scopus 로고    scopus 로고
    • A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress
    • N.Elfving, V.Razvan, C.V.Bharatula, S.Bjorklund, A.Morozov, J.Broach. 2014. A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress. Nucleic Acids Res. 10.1093/nar/gku176
    • (2014) Nucleic Acids Res
    • Elfving, N.1    Razvan, V.2    Bharatula, C.V.3    Bjorklund, S.4    Morozov, A.5    Broach, J.6
  • 24
    • 0034615559 scopus 로고    scopus 로고
    • Regulation of blood coagulation
    • C.T.Esmon. 2000. Regulation of blood coagulation. Biochim Bioph Acta. 1477(1–2):349–360. doi: 10.1016/S0167-4838(99)00266-6
    • (2000) Biochim Bioph Acta , vol.1477 , Issue.1-2 , pp. 349-360
    • Esmon, C.T.1
  • 25
    • 34250332235 scopus 로고    scopus 로고
    • Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies
    • G.M.Euskirchen, J.S.Rozowsky, C.L.Wei, H.L.Wah, Z.D.Zhang, S.Hartman, O.Emanuelsson. 2007. Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies. Genome Res. 17(6):898–909. doi: 10.1101/gr.5583007
    • (2007) Genome Res , vol.17 , Issue.6 , pp. 898-909
    • Euskirchen, G.M.1    Rozowsky, J.S.2    Wei, C.L.3    Wah, H.L.4    Zhang, Z.D.5    Hartman, S.6    Emanuelsson, O.7
  • 27
    • 79955676390 scopus 로고    scopus 로고
    • PeakRanger: a cloud-enabled peak caller for ChIP-seq data
    • X.Feng, R.Grossman, L.Stein. 2011. PeakRanger: a cloud-enabled peak caller for ChIP-seq data. BMC Bioinformatics. 12:139. doi:10.1186/1471-2105-12-139
    • (2011) BMC Bioinformatics , vol.12 , pp. 139
    • Feng, X.1    Grossman, R.2    Stein, L.3
  • 28
    • 0036023917 scopus 로고    scopus 로고
    • A review of DNA sequencing techniques
    • L.T.C.Franca, E.Carrilho, B.Tarso. 2002. A review of DNA sequencing techniques. Q Rev Biophys. 35(2):169–200. doi: 10.1017/S0033583502003797
    • (2002) Q Rev Biophys , vol.35 , Issue.2 , pp. 169-200
    • Franca, L.T.C.1    Carrilho, E.2    Tarso, B.3
  • 29
    • 84977448020 scopus 로고    scopus 로고
    • Parallelizing bioinformatics applications with MapReduce. Cloud Computing and Its Application
    • M.Gaggero, S.Leo, S.Manca, F.Santoni, O.Schiaratura, G.Zanetti. 2008. Parallelizing bioinformatics applications with MapReduce. Cloud Computing and Its Application. 1–6.
    • (2008) , pp. 1-6
    • Gaggero, M.1    Leo, S.2    Manca, S.3    Santoni, F.4    Schiaratura, O.5    Zanetti, G.6
  • 32
    • 80053557894 scopus 로고    scopus 로고
    • Human genome sequencing in health and disease
    • C.Gonzaga-Jauregui, J.R.Lupski, R.A.Gibbs. 2012. Human genome sequencing in health and disease. Annu Rev Med. 63(1):35–61. doi: 10.1146/annurev-med-051010-162644
    • (2012) Annu Rev Med , vol.63 , Issue.1 , pp. 35-61
    • Gonzaga-Jauregui, C.1    Lupski, J.R.2    Gibbs, R.A.3
  • 33
    • 84880393400 scopus 로고    scopus 로고
    • Next-generation sequencing: methodology and application
    • A.Grada, K.Weinbrecht. 2013. Next-generation sequencing: methodology and application. J Invest Dermatol. 133:e11. doi:10.1038/jid.2013.248
    • (2013) J Invest Dermatol , vol.133 , pp. 11
    • Grada, A.1    Weinbrecht, K.2
  • 34
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • C.J.Gregory, C.L.Lauber, W.A.Walters, D.Berg-Lyons, J.Huntley, N.Fierer, S.M.Owens. 2012. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6(8):1621–1624. doi: 10.1038/ismej.2012.8
    • (2012) ISME J , vol.6 , Issue.8 , pp. 1621-1624
    • Gregory, C.J.1    Lauber, C.L.2    Walters, W.A.3    Berg-Lyons, D.4    Huntley, J.5    Fierer, N.6    Owens, S.M.7
  • 35
    • 84977440804 scopus 로고    scopus 로고
    • Regulation of microRNAs, Landes Bioscience Espringer
    • H.Großhans, Friedrich Miescher Ins. 2010. Regulation of microRNAs, Landes Bioscience Espringer.
    • (2010)
    • Großhans, H.1
  • 36
    • 84903728878 scopus 로고    scopus 로고
    • Next generation sequencing techniques in neurological diseases: redefining clinical and molecular associations
    • R.Guerreiro, J.Bras, J.Hardy, A.Singleton. 2014. Next generation sequencing techniques in neurological diseases: redefining clinical and molecular associations. Hum Mol Genet. doi:10.1093/hmg/ddu203
    • (2014) Hum Mol Genet
    • Guerreiro, R.1    Bras, J.2    Hardy, J.3    Singleton, A.4
  • 37
    • 84876783779 scopus 로고    scopus 로고
    • Next generation sequencing in clinical medicine: challenges and lessons for pathology and biomedical informatics
    • R.R.Gullapalli, K.V.Desai, L.Santana-Santos, J.A.Kant, M.J.Becich. 2012. Next generation sequencing in clinical medicine: challenges and lessons for pathology and biomedical informatics. J Pathol Inform. 3:40. doi:10.4103/2153-3539.103013.
    • (2012) J Pathol Inform , vol.3 , pp. 40
    • Gullapalli, R.R.1    Desai, K.V.2    Santana-Santos, L.3    Kant, J.A.4    Becich, M.J.5
  • 39
    • 84880266648 scopus 로고    scopus 로고
    • De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis
    • B.J.Haas, A.Papanicolaou, M.Yassour, M.Grabherr, P.D.Blood, J.Bowden, M.B.Couger. 2013. De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis. Nat Protoc. 8:1494–1512. doi:10.1038/nprot.2013.084
    • (2013) Nat Protoc , vol.8 , pp. 1494-1512
    • Haas, B.J.1    Papanicolaou, A.2    Yassour, M.3    Grabherr, M.4    Blood, P.D.5    Bowden, J.6    Couger, M.B.7
  • 41
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
    • T.Helga, J.T.Robinson, J.P.Mesirov. 2013. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Bioinform. 14(2):178–192.
    • (2013) Bioinform , vol.14 , Issue.2 , pp. 178-192
    • Helga, T.1    Robinson, J.T.2    Mesirov, J.P.3
  • 42
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • L.Heng, R.Durbin. 2010. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 26(5):589–595. doi: 10.1093/bioinformatics/btp698
    • (2010) Bioinformatics , vol.26 , Issue.5 , pp. 589-595
    • Heng, L.1    Durbin, R.2
  • 43
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • L.Heng, J.Ruan, R.Durbin. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18(11):1851–1858. doi: 10.1101/gr.078212.108
    • (2008) Genome Res , vol.18 , Issue.11 , pp. 1851-1858
    • Heng, L.1    Ruan, J.2    Durbin, R.3
  • 44
    • 78650281342 scopus 로고    scopus 로고
    • New methods for next generation sequencing based microRNA expression profiling
    • B.P.J.Henk, Y.Ariyurek, G.van Ommen, J.T.den Dunnen, P.A.C.‘t Hoen. 2010. New methods for next generation sequencing based microRNA expression profiling. BMC Genomics. 11:716. doi: 10.1186/1471-2164-11-716
    • (2010) BMC Genomics , vol.11 , pp. 716
    • Henk, B.P.J.1    Ariyurek, Y.2    van Ommen, G.3    den Dunnen, J.T.4    ‘t Hoen, P.A.C.5
  • 46
    • 84871784366 scopus 로고    scopus 로고
    • BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters
    • H.Huang, T.S.Pril. 2013. BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters. Bioinformatic. 29(1):135–136. doi: 10.1093/bioinformatics/bts647
    • (2013) Bioinformatic , vol.29 , Issue.1 , pp. 135-136
    • Huang, H.1    Pril, T.S.2
  • 47
    • 66449136667 scopus 로고    scopus 로고
    • Inan?? Birol. ABySS: a parallel assembler for short read sequence data
    • S.T.Jared, K.Wong, S.D.Jackman, J.E.Schein, S.J.M.Jones. 2009. Inan?? Birol. ABySS: a parallel assembler for short read sequence data. Genome Res. 19(6):1117–1123. doi: 10.1101/gr.089532.108
    • (2009) Genome Res , vol.19 , Issue.6 , pp. 1117-1123
    • Jared, S.T.1    Wong, K.2    Jackman, S.D.3    Schein, J.E.4    Jones, S.J.M.5
  • 48
    • 74549135281 scopus 로고    scopus 로고
    • Transcriptome sequencing with the genome sequencer FLX system
    • T.Jarvie, T.Harkins. 2008. Transcriptome sequencing with the genome sequencer FLX system. Nat Methods (September). 5:6–8.
    • (2008) Nat Methods (September) , vol.5 , pp. 6-8
    • Jarvie, T.1    Harkins, T.2
  • 49
    • 84899697726 scopus 로고    scopus 로고
    • Bioinformatics pipelines for targeted resequencing and whole-exome sequencing of human andmouse genomes: a virtual appliance approach for instant deployment
    • L.JasonLi, A.D.Maria, S.Isaam, Q.W.Stephen, M.Victoria, L.G.David, C.Franco, D.Ken, L.R.Georgina, R.T.Ella,. 2014. Bioinformatics pipelines for targeted resequencing and whole-exome sequencing of human andmouse genomes: a virtual appliance approach for instant deployment. Plos ONE. doi:doi:10.1371/journal.pone.0095217
    • (2014) Plos ONE
    • Jason, L.1    Maria, A.D.2    Isaam, S.3    Stephen, Q.W.4    Victoria, M.5    David, L.G.6    Franco, C.7    Ken, D.8    Georgina, L.R.9    Ella, R.T.10
  • 50
    • 84899529765 scopus 로고    scopus 로고
    • Evaluation and comparison of multiple aligners for next-generation sequencing data analysis
    • S.Jing, F.Zhu, W.Vongsangnak, Y.Tang, W.Zhang, B.Shen. 2014. Evaluation and comparison of multiple aligners for next-generation sequencing data analysis. BioMed Res Int.
    • (2014) BioMed Res Int
    • Jing, S.1    Zhu, F.2    Vongsangnak, W.3    Tang, Y.4    Zhang, W.5    Shen, B.6
  • 51
    • 79959435199 scopus 로고    scopus 로고
    • Genome-wide genetic marker discovery and genotyping using next-generation sequencing
    • D.W.John, P.A.Hohenlohe, P.D.Etter, J.Q.Boone, J.M.Catchen, M.L.Blaxter. 2011. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat Rev Genet. 12(7):499–510. doi: 10.1038/nrg3012
    • (2011) Nat Rev Genet , vol.12 , Issue.7 , pp. 499-510
    • John, D.W.1    Hohenlohe, P.A.2    Etter, P.D.3    Boone, J.Q.4    Catchen, J.M.5    Blaxter, M.L.6
  • 52
    • 75749135218 scopus 로고    scopus 로고
    • Metagenomics: facts and artifacts, and computational challenges
    • W.C.John, Y.Ye. 2009. Metagenomics: facts and artifacts, and computational challenges. J Comput Sci Tech. 25(1):71–81.
    • (2009) J Comput Sci Tech , vol.25 , Issue.1 , pp. 71-81
    • John, W.C.1    Ye, Y.2
  • 53
    • 84861736018 scopus 로고    scopus 로고
    • Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses
    • L.Jourdren, M.Bernard, M.-A.Dillies, S.Le Crom. 2012. Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses. Bioinformatics. 28(11):1542–1543. doi: 10.1093/bioinformatics/bts165
    • (2012) Bioinformatics , vol.28 , Issue.11 , pp. 1542-1543
    • Jourdren, L.1    Bernard, M.2    Dillies, M.-A.3    Le Crom, S.4
  • 54
    • 35948929094 scopus 로고    scopus 로고
    • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing
    • D.C.Juliane, C.Lottaz, T.Borodina, H.Himmelbauer. 2007. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Res. 17(11):1697–1706. doi: 10.1101/gr.6435207
    • (2007) Genome Res , vol.17 , Issue.11 , pp. 1697-1706
    • Juliane, D.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 55
    • 60749104999 scopus 로고    scopus 로고
    • Next generation tools for the annotation of human SNPs
    • R.Karchin. 2009. Next generation tools for the annotation of human SNPs. Bioinform. 10:35–52.
    • (2009) Bioinform , vol.10 , pp. 35-52
    • Karchin, R.1
  • 56
    • 78649358717 scopus 로고    scopus 로고
    • Quake: quality-aware detection and correction of sequencing errors
    • D.R.Kelley, M.C.Schatz, S.L.Salzberg. 2010. Quake: quality-aware detection and correction of sequencing errors. Genome Biol. 11:R116. doi:10.1186/gb-2010-11-11-r116
    • (2010) Genome Biol , vol.11 , pp. 116
    • Kelley, D.R.1    Schatz, M.C.2    Salzberg, S.L.3
  • 57
    • 80052976954 scopus 로고    scopus 로고
    • ChIP-Seq: technical considerations for obtaining high-quality data
    • B.L.Kidder, G.Hu, K.Zhao. 2012. ChIP-Seq: technical considerations for obtaining high-quality data. Nat Immunol. 918–922. doi:10.1038/ni.2117
    • (2012) Nat Immunol , pp. 918-922
    • Kidder, B.L.1    Hu, G.2    Zhao, K.3
  • 58
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • D.C.Koboldt, Q.Zhang, D.E.Larson. 2012. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 22:568–576. doi: 10.1101/gr.129684.111
    • (2012) Genome Res , vol.22 , pp. 568-576
    • Koboldt, D.C.1    Zhang, Q.2    Larson, D.E.3
  • 60
    • 84902668886 scopus 로고    scopus 로고
    • Evaluation of a pooled strategy for high-throughput sequencing of cosmid clones from metagenomic libraries
    • K.N.Lam, M.W.Hall, K.Engel, G.Vey, J.Cheng, J.D.Neufeld, T.C.Charles. 2014. Evaluation of a pooled strategy for high-throughput sequencing of cosmid clones from metagenomic libraries. PloS ONE. doi:10.1371/journal.pone.0098968
    • (2014) PloS ONE
    • Lam, K.N.1    Hall, M.W.2    Engel, K.3    Vey, G.4    Cheng, J.5    Neufeld, J.D.6    Charles, T.C.7
  • 61
    • 77955338107 scopus 로고    scopus 로고
    • BioTorrents: a file sharing service for scientific data
    • M.G.I.Langille, J.A.Eisen. 2010. BioTorrents: a file sharing service for scientific data. Plos ONE. 10.1371/journal.pone.0010071
    • (2010) Plos ONE
    • Langille, M.G.I.1    Eisen, J.A.2
  • 62
    • 77955343193 scopus 로고    scopus 로고
    • Cloud-scale RNA-sequencing differential expression analysis with Myrna
    • B.Langmead, K.D.Hansen, J.T.Leek. 2010. Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biol. 11(8):R83. doi:10.1186/gb-2010-11-8-r83
    • (2010) Genome Biol , vol.11 , Issue.8 , pp. 83
    • Langmead, B.1    Hansen, K.D.2    Leek, J.T.3
  • 63
    • 77949535661 scopus 로고    scopus 로고
    • Biodoop: bioinformatics on Hadoop. Parallel processing workshops, 2009. ICPPW ‘09. International Conference on
    • S.Leo, F.Santoni, G.Zanetti. 2009. Biodoop: bioinformatics on Hadoop. Parallel processing workshops, 2009. ICPPW ‘09. International Conference on. doi:10.1109/ICPPW.2009.37
    • (2009)
    • Leo, S.1    Santoni, F.2    Zanetti, G.3
  • 64
    • 84977459271 scopus 로고    scopus 로고
    • Illumina launches personal genome sequencing service for $48,000. Scienceblogs.com
    • D.MacArthur 2009. Illumina launches personal genome sequencing service for $48,000. Scienceblogs.com.
    • (2009)
    • MacArthur, D.1
  • 65
    • 78650004201 scopus 로고    scopus 로고
    • MicroRNA: biogenesis, function and role in cancer
    • L.-A.MacFarlane, P.R.Murphy 2010. MicroRNA: biogenesis, function and role in cancer. Curr Genomics. 11(7):537–561. doi:10.2174/138920210793175895
    • (2010) Curr Genomics , vol.11 , Issue.7 , pp. 537-561
    • MacFarlane, L.-A.1    Murphy, P.R.2
  • 66
    • 84977452291 scopus 로고    scopus 로고
    • It’s not ‘just’ about BIGDATA – how to get to actionable clinical knowledge from BIGDATA. Innovation Center for Biomedical Informatics Georgetown University
    • S.Madhavan. 2012. It’s not ‘just’ about BIGDATA – how to get to actionable clinical knowledge from BIGDATA. Innovation Center for Biomedical Informatics Georgetown University.
    • (2012)
    • Madhavan, S.1
  • 67
    • 84878488348 scopus 로고    scopus 로고
    • Understanding mapreduce-based next-generation sequencing alignment on distributed cyberinfrastucture. ECMLS’12, ACM. 978-1-4503-1339-1/12/06
    • P.K.Mantha, N.Kim, A.Lucknw, J.Kim, S.Jha. 2012. Understanding mapreduce-based next-generation sequencing alignment on distributed cyberinfrastucture. ECMLS’12, ACM. 978-1-4503-1339-1/12/06.
    • (2012)
    • Mantha, P.K.1    Kim, N.2    Lucknw, A.3    Kim, J.4    Jha, S.5
  • 68
    • 62749186138 scopus 로고    scopus 로고
    • CloudBLAST: combining MapReduce and virtualization on distributed resources for bioinformatics applications
    • A.Matsunaga, M.Tsugawa, J.Fortes. 2008. CloudBLAST: combining MapReduce and virtualization on distributed resources for bioinformatics applications. EScience. 10.1109/eScience.2008.62
    • (2008) EScience
    • Matsunaga, A.1    Tsugawa, M.2    Fortes, J.3
  • 69
    • 39449089394 scopus 로고    scopus 로고
    • Parallel tagged sequencing on the 454 platform
    • M.Matthias, U.Stenzel, M.Hofreiter. 2008. Parallel tagged sequencing on the 454 platform. Nat protoc. 3(2):267–278. doi: 10.1038/nprot.2007.520
    • (2008) Nat protoc , vol.3 , Issue.2 , pp. 267-278
    • Matthias, M.1    Stenzel, U.2    Hofreiter, M.3
  • 71
    • 84855564475 scopus 로고    scopus 로고
    • Next-generation sequencing for cancer diagnostics: a practical perspective
    • C.Meldrum, M.A.Doyle, R.W.Tothill. 2011. Next-generation sequencing for cancer diagnostics: a practical perspective. Clin Biochem Rev. 32(4):177–195.
    • (2011) Clin Biochem Rev , vol.32 , Issue.4 , pp. 177-195
    • Meldrum, C.1    Doyle, M.A.2    Tothill, R.W.3
  • 72
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies – the next generation
    • M.L.Metzker. 2010. Sequencing technologies – the next generation. Nat Rev Genet. 11:31–46. doi:10.1038/nrg2626
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 73
    • 58249097172 scopus 로고    scopus 로고
    • Microarray technology and cancer gene profiling. Volume 593. ESpringer Science+Business Media, LLC Landes Bioscience/Eurekah.com
    • S.Mocellin. 2007. Microarray technology and cancer gene profiling. Volume 593. ESpringer Science+Business Media, LLC Landes Bioscience/Eurekah.com.
    • (2007)
    • Mocellin, S.1
  • 74
    • 53649088131 scopus 로고    scopus 로고
    • Applications of next-generation sequencing technologies in functional genomics
    • O.Morozova, M.A.Marra. 2008. Applications of next-generation sequencing technologies in functional genomics. Genomics. 92(5):255–264.
    • (2008) Genomics , vol.92 , Issue.5 , pp. 255-264
    • Morozova, O.1    Marra, M.A.2
  • 76
    • 75949115042 scopus 로고    scopus 로고
    • RNA-Seq: a method for comprehensive transcriptome analysis
    • U.Nagalakshmi, K.Waern, M.Snyder. 2010. RNA-Seq: a method for comprehensive transcriptome analysis. Curr Prot Mol Biol. doi:10.1002/0471142727.mb0411s89
    • (2010) Curr Prot Mol Biol
    • Nagalakshmi, U.1    Waern, K.2    Snyder, M.3
  • 77
    • 84977460200 scopus 로고    scopus 로고
    • Nextera DNA sample prep kit
    • Nextera Explain. Best Practices. 2013. Nextera DNA sample prep kit. Energy. 5(800):1–22.
    • (2013) Energy , vol.5 , Issue.800 , pp. 1-22
  • 78
    • 79957895842 scopus 로고    scopus 로고
    • CloudAligner: a fast and full-featured MapReduce based tool for sequence mapping
    • T.Nguyen, W.Shi, D.Ruden. 2011. CloudAligner: a fast and full-featured MapReduce based tool for sequence mapping. BMC Research Notes. 4:171. doi:10.1186/1756-0500-4-171
    • (2011) BMC Research Notes , vol.4 , pp. 171
    • Nguyen, T.1    Shi, W.2    Ruden, D.3
  • 79
    • 84859075799 scopus 로고    scopus 로고
    • Hadoop-BAM: directly manipulating next generation sequencing data in the cloud
    • M.Niemenmaa, A.Kallio, K.Heljanko. 2012. Hadoop-BAM: directly manipulating next generation sequencing data in the cloud. Bioinformatics. 28(6):876–877. doi: 10.1093/bioinformatics/bts054
    • (2012) Bioinformatics , vol.28 , Issue.6 , pp. 876-877
    • Niemenmaa, M.1    Kallio, A.2    Heljanko, K.3
  • 80
    • 84977463582 scopus 로고    scopus 로고
    • International human genome sequencing consortium describes finished human genome sequence
    • NIH Nes Release publisher, National Institutes of Health. 2004. International human genome sequencing consortium describes finished human genome sequence.
    • (2004)
  • 81
    • 78650802666 scopus 로고    scopus 로고
    • SeqWare query engine: storing and searching sequence data in the cloud
    • B.D.O’Connor, B.Merriman, S.F.Nelson. 2010. SeqWare query engine: storing and searching sequence data in the cloud. BMC Bioinformatics. doi:10.1186/1471-2105-11-S12-S2
    • (2010) BMC Bioinformatics
    • O’Connor, B.D.1    Merriman, B.2    Nelson, S.F.3
  • 82
    • 84883788980 scopus 로고    scopus 로고
    • ‘Big data’, Hadoop and cloud computing in genomics
    • A.O’Driscoll, J.Daugelaiteb, R.D.Sleatorb. 2013. ‘Big data’, Hadoop and cloud computing in genomics. J Biomed Inform. 46(5):774–781. doi:10.1016/j.jbi.2013.07.001
    • (2013) J Biomed Inform , vol.46 , Issue.5 , pp. 774-781
    • O’Driscoll, A.1    Daugelaiteb, J.2    Sleatorb, R.D.3
  • 83
    • 84883001733 scopus 로고    scopus 로고
    • DistMap: a toolkit for distributed short read mapping on a Hadoop cluster
    • R.V.Pandey, C.Schlötterer. 2013. DistMap: a toolkit for distributed short read mapping on a Hadoop cluster. Plos. doi:10.1371/journal.pone.0072614
    • (2013) Plos
    • Pandey, R.V.1    Schlötterer, C.2
  • 84
    • 70349312354 scopus 로고    scopus 로고
    • ChIP-Seq: advantages and challenges of a maturing technology
    • P.J.Park. 2009. ChIP-Seq: advantages and challenges of a maturing technology. Nat Rev Genet. 10(10):669–680. doi:10.1038/nrg2641
    • (2009) Nat Rev Genet , vol.10 , Issue.10 , pp. 669-680
    • Park, P.J.1
  • 85
    • 44949127038 scopus 로고    scopus 로고
    • Helicos BIOSCIences
    • M.Patrice. 2008. Helicos BIOSCIences. Pharmacogenomics. 9:477–480. doi: 10.2217/14622416.9.4.477
    • (2008) Pharmacogenomics , vol.9 , pp. 477-480
    • Patrice, M.1
  • 86
    • 84977450928 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms in human disease and evolution: phylogenies and genealogies
    • T.D.Paul. 2008. Single nucleotide polymorphisms in human disease and evolution: phylogenies and genealogies. Encycl Life Sci. 1–11. doi:doi:10.1002/9780470015902.a0020763.
    • (2008) Encycl Life Sci , pp. 1-11
    • Paul, T.D.1
  • 87
    • 84920742580 scopus 로고    scopus 로고
    • A Hadoop-galaxy adapter for user-friendly and scalable data-intensive bioinformatics in galaxy
    • L.Pireddu, S.Leo, N.Soranzo. 2014. A Hadoop-galaxy adapter for user-friendly and scalable data-intensive bioinformatics in galaxy. ACM-BCB. doi:10.1145/2649387.264942
    • (2014) ACM-BCB
    • Pireddu, L.1    Leo, S.2    Soranzo, N.3
  • 88
    • 79960410567 scopus 로고    scopus 로고
    • SEAL: a distributed short read mapping and duplicate removal tool
    • L.Pireddu, S.Leo, G.Zanetti. 2011. SEAL: a distributed short read mapping and duplicate removal tool. Bioinformatics. 27(15):2159–2160. doi: 10.1093/bioinformatics/btr325
    • (2011) Bioinformatics , vol.27 , Issue.15 , pp. 2159-2160
    • Pireddu, L.1    Leo, S.2    Zanetti, G.3
  • 89
    • 67449095888 scopus 로고    scopus 로고
    • Genome assembly reborn: recent computational challenges
    • M.Pop. 2009. Genome assembly reborn: recent computational challenges. Bioinform. 10(4):354–366. 10.1093/bib/bbp026
    • (2009) Bioinform , vol.10 , Issue.4 , pp. 354-366
    • Pop, M.1
  • 90
    • 70249089090 scopus 로고    scopus 로고
    • Single-molecule sequencing of an individual human genome
    • D.Pushkarev, N.Neff, S.Quake. 2009. Single-molecule sequencing of an individual human genome. Nat Biotechnol. doi:10.1038/nbt.1561
    • (2009) Nat Biotechnol
    • Pushkarev, D.1    Neff, N.2    Quake, S.3
  • 91
    • 84865591846 scopus 로고    scopus 로고
    • A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
    • M.Quail, E.S.Miriam, C.Paul, D.O.Thomas, R.H.Simon, R.C.Thomas, B.Anna, P.S.Harold, G.Yong. 2012. A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers. BMC Genomics. 13(1):p.1. doi:doi:10.1186/1471-2164-13-341
    • (2012) BMC Genomics , vol.13 , Issue.1 , pp. 1
    • Quail, M.1    Miriam, E.S.2    Paul, C.3    Thomas, D.O.4    Simon, R.H.5    Thomas, R.C.6    Anna, B.7    Harold, P.S.8    Yong, G.9
  • 92
    • 77951860138 scopus 로고    scopus 로고
    • Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome
    • A.Quinlan, R.Clark, I.Hall. 2010. Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome. Genome Res. 20(5):623–635. doi: 10.1101/gr.102970.109
    • (2010) Genome Res , vol.20 , Issue.5 , pp. 623-635
    • Quinlan, A.1    Clark, R.2    Hall, I.3
  • 94
    • 84905108362 scopus 로고    scopus 로고
    • Next-generation sequencing for research and diagnostics in kidney disease
    • K.Renkema, M.Stokman, R.Giles, N.Knoers. 2014. Next-generation sequencing for research and diagnostics in kidney disease. Nat Rev Nephrol. doi:10.1038/nrneph.95
    • (2014) Nat Rev Nephrol
    • Renkema, K.1    Stokman, M.2    Giles, R.3    Knoers, N.4
  • 95
    • 64849115804 scopus 로고    scopus 로고
    • Digital PCR provides sensitive and absolute calibration for high throughput sequencing
    • W.Richar, P.C.Blainey, H.C.Fan, S.R.Quake. 2009. Digital PCR provides sensitive and absolute calibration for high throughput sequencing. BMC Genomics. 10:116. doi: 10.1186/1471-2164-10-116
    • (2009) BMC Genomics , vol.10 , pp. 116
    • Richar, W.1    Blainey, P.C.2    Fan, H.C.3    Quake, S.R.4
  • 97
    • 78149437703 scopus 로고    scopus 로고
    • Non-synonymous and synonymous coding SNPS show similar likelihood and effect size of human disease association
    • C.Rong, E.V.Davydov, M.Sirsota, A.J.Butte. 2010. Non-synonymous and synonymous coding SNPS show similar likelihood and effect size of human disease association. PLoS ONE. 5(10).
    • (2010) PLoS ONE , vol.5 , Issue.10
    • Rong, C.1    Davydov, E.V.2    Sirsota, M.3    Butte, A.J.4
  • 98
    • 77956279237 scopus 로고    scopus 로고
    • Assembly of large genomes using second-generation sequencing
    • M.Schatz, A.L.Delcher, S.L.Salzberga. 2010. Assembly of large genomes using second-generation sequencing. Genome Res. 20(9):1165–1173. doi: 10.1101/gr.101360.109
    • (2010) Genome Res , vol.20 , Issue.9 , pp. 1165-1173
    • Schatz, M.1    Delcher, A.L.2    Salzberga, S.L.3
  • 99
    • 65649120715 scopus 로고    scopus 로고
    • CloudBurst: highly sensitive read mapping with MapReduce
    • M.C.Schatz. 2009. CloudBurst: highly sensitive read mapping with MapReduce. Bioinformatics. 25(11):1363–1369. doi: 10.1093/bioinformatics/btp236
    • (2009) Bioinformatics , vol.25 , Issue.11 , pp. 1363-1369
    • Schatz, M.C.1
  • 101
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • J.Shendure, H.Ji. 2008. Next-generation DNA sequencing. Nat Biotechnol. 26(10):1135–1145. doi: 10.1038/nbt1486
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 102
    • 84977458149 scopus 로고    scopus 로고
    • Big Data – a big game changer. CSI Communications
    • S.K.Shivakumar. 2013. Big Data – a big game changer. CSI Communications.
    • (2013)
    • Shivakumar, S.K.1
  • 103
    • 84977441555 scopus 로고    scopus 로고
    • SR1-S1 HRAS Mutations and 11p allelic imbalance in a rare case of agminated spitz nevus: bridging the gap between bench and bedside through collaborative research
    • K.Sol-Church, S.Catalano, J.Holbrook, D.Stabley, K.Conard. 2009. SR1-S1 HRAS Mutations and 11p allelic imbalance in a rare case of agminated spitz nevus: bridging the gap between bench and bedside through collaborative research. J Biomol Tech. 20(1):31–89.
    • (2009) J Biomol Tech , vol.20 , Issue.1 , pp. 31-89
    • Sol-Church, K.1    Catalano, S.2    Holbrook, J.3    Stabley, D.4    Conard, K.5
  • 104
    • 50849126804 scopus 로고    scopus 로고
    • High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies
    • A.Srivatsan, Y.Han, equal contributor, J.Peng, A.Tehranchi, R.Gibbs, J.Wang, R.Chen. 2008. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PloS Genetics. doi:10.1371/journal.pgen.1000139
    • (2008) PloS Genetics
    • Srivatsan, A.1    Han, Y.2    Peng, J.3    Tehranchi, A.4    Gibbs, R.5    Wang, J.6    Chen, R.7
  • 107
    • 84977461788 scopus 로고    scopus 로고
    • Identifying human disease genes. In: Human Molecular Genetics. 2nd ed. Chapter 15
    • T.Strachan, A.P.Read. 1999. Identifying human disease genes. In: Human Molecular Genetics. 2nd ed. Chapter 15.
    • (1999)
    • Strachan, T.1    Read, A.P.2
  • 108
    • 80054913451 scopus 로고    scopus 로고
    • FLASH: fast length adjustment of short reads to improve genome assemblies
    • M.Tanja, S.L.Salzberg. 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 27(21):2957–2963. doi: 10.1093/bioinformatics/btr507
    • (2011) Bioinformatics , vol.27 , Issue.21 , pp. 2957-2963
    • Tanja, M.1    Salzberg, S.L.2
  • 109
    • 78650811522 scopus 로고    scopus 로고
    • An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
    • R.C.Taylor. 2010. An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics. BMC Bioinformatics. 11(Suppl 12):S1. 10.1186/1471-2105-11-S12-S1 doi: 10.1186/1471-2105-11-S12-S1
    • (2010) BMC Bioinformatics , vol.11 , pp. 1
    • Taylor, R.C.1
  • 111
    • 84862989346 scopus 로고    scopus 로고
    • Metagenomics – a guide from sampling to data analysis
    • T.Thomas, J.Gilbert, F.Meyer. 2012. Metagenomics – a guide from sampling to data analysis. Microb Inform Exper. 2:3. doi:10.1186/2042-5783-2-3
    • (2012) Microb Inform Exper , vol.2 , pp. 3
    • Thomas, T.1    Gilbert, J.2    Meyer, F.3
  • 112
    • 84977460440 scopus 로고    scopus 로고
    • A better idea. The Wall Street Journal
    • M.Totty. 2005. A better idea. The Wall Street Journal.
    • (2005)
    • Totty, M.1
  • 113
    • 66149192669 scopus 로고    scopus 로고
    • How to map billions of short reads onto genomes
    • C.Trapnell, S.L.Salzberg. 2010. How to map billions of short reads onto genomes. Nat Biotechnol. 27(5):455–457. doi:10.1038/nbt0509-455
    • (2010) Nat Biotechnol , vol.27 , Issue.5 , pp. 455-457
    • Trapnell, C.1    Salzberg, S.L.2
  • 114
    • 84859641098 scopus 로고    scopus 로고
    • DNA methylation differences at growth related genes correlate with birth weight: a molecular signature linked to developmental origins of adult disease?
    • N.Turan, M.F.Ghalwash, S.Katari, C.Coutifaris, Z.Obradovic, C.Sapienz. 2012. DNA methylation differences at growth related genes correlate with birth weight: a molecular signature linked to developmental origins of adult disease? BMC Med Genomics. 5:10. 10.1186/1755-8794-5-10 doi: 10.1186/1755-8794-5-10
    • (2012) BMC Med Genomics , vol.5 , pp. 10
    • Turan, N.1    Ghalwash, M.F.2    Katari, S.3    Coutifaris, C.4    Obradovic, Z.5    Sapienz, C.6
  • 117
    • 80054789260 scopus 로고    scopus 로고
    • A low-cost library construction protocol and data analysis pipeline for illumina-based strand-specific multiplex RNA-Seq
    • L.Wang, Y.Si, L.K.Dedow, Y.Shao, P.Liu, T.P.Brutnell. 2011. A low-cost library construction protocol and data analysis pipeline for illumina-based strand-specific multiplex RNA-Seq. PloS ONE. doi:10.1371/journal.pone.0026426
    • (2011) PloS ONE
    • Wang, L.1    Si, Y.2    Dedow, L.K.3    Shao, Y.4    Liu, P.5    Brutnell, T.P.6
  • 118
    • 33847307402 scopus 로고    scopus 로고
    • Assembling millions of short DNA sequences using SSAKE
    • L.R.Warren, G.G.Sutton, S.J.M.Jones, R.A.Holt. 2007. Assembling millions of short DNA sequences using SSAKE. Bioinformatics. 23(4):500–501. doi: 10.1093/bioinformatics/btl629
    • (2007) Bioinformatics , vol.23 , Issue.4 , pp. 500-501
    • Warren, L.R.1    Sutton, G.G.2    Jones, S.J.M.3    Holt, R.A.4
  • 119
    • 0025318743 scopus 로고
    • The human genome project: past, present, and future
    • J.D.Watson. 1990. The human genome project: past, present, and future. Science. 248:44–49. doi: 10.1126/science.2181665
    • (1990) Science , vol.248 , pp. 44-49
    • Watson, J.D.1
  • 121
    • 84870888110 scopus 로고    scopus 로고
    • Evaluating de Bruijn graph assemblers on 454 transcriptomic data
    • R.Xianwen, T.Liu, J.Dong, L.Sun, J.Yang, Y.Zhu, Q.Jin. 2012. Evaluating de Bruijn graph assemblers on 454 transcriptomic data. PLoS ONE. 7(12).
    • (2012) PLoS ONE , vol.7 , Issue.12
    • Xianwen, R.1    Liu, T.2    Dong, J.3    Sun, L.4    Yang, J.5    Zhu, Y.6    Jin, Q.7
  • 122
    • 84902797424 scopus 로고    scopus 로고
    • Transcriptional outcome of telomere signalling
    • J.Ye, V.M.Renault, K.Jamet, E.Gilson. 2014. Transcriptional outcome of telomere signalling. Nat Rev Genet. 10,15(7):491–503. doi: 10.1038/nrg3743
    • (2014) Nat Rev Genet , vol.10-15 , Issue.7 , pp. 491-503
    • Ye, J.1    Renault, V.M.2    Jamet, K.3    Gilson, E.4
  • 123
    • 84862198590 scopus 로고    scopus 로고
    • The sequence read archive: explosive growth of sequencing data
    • 40.D1
    • K.Yuichi, M.Shumway, R.Leinonen. 2012. The sequence read archive: explosive growth of sequencing data. Nucleic Acids Res. 40.D1.
    • (2012) Nucleic Acids Res
    • Yuichi, K.1    Shumway, M.2    Leinonen, R.3
  • 124
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • R.Zerbino, E.Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821–829. doi: 10.1101/gr.074492.107
    • (2008) Genome Res , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.