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Volumn 28, Issue 5, 2012, Pages 721-723

FX: An RNA-seq analysis tool on the cloud

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

EID: 84863289036     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts023     Document Type: Article
Times cited : (63)

References (10)
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    • Kim, J.I.1
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    • Searching for SNPs with cloud computing
    • Langmead,B. et al. (2009) Searching for SNPs with cloud computing. Genome Biol., 10, R134.
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    • Cloud-scale RNA-sequencing differential expression analysis with Myrna
    • Langmead,B. et al. (2010) Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biol., 11, R83.
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    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
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    • Nguyen, T.1
  • 8
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    • CloudBurst: highly sensitive read mapping with MapReduce
    • Schatz,M.C. (2009) CloudBurst: highly sensitive read mapping with MapReduce. Bioinformatics, 25, 1363-1369.
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  • 9
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    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell,C. et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol., 28, 511-515.
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  • 10
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    • Fast and SNP-tolerant detection of complex variants and splicing in short reads
    • Wu,T.D. and Nacu,S. (2010) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics, 26, 873-881.
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