메뉴 건너뛰기




Volumn 28, Issue 11, 2012, Pages 1542-1543

Eoulsan: A cloud computing-based framework facilitating high throughput sequencing analyses

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BIOLOGY; COMPUTER PROGRAM; HIGH THROUGHPUT SEQUENCING; METHODOLOGY; MOUSE; SEQUENCE ANALYSIS;

EID: 84861736018     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts165     Document Type: Article
Times cited : (118)

References (11)
  • 1
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. and Huber, W. (2010) Differential expression analysis for sequence count data. Genome Biol., 11, R106.
    • (2010) Genome Biol. , vol.11
    • Anders, S.1    Huber, W.2
  • 2
    • 72849149423 scopus 로고    scopus 로고
    • Searching for SNPs with cloud computing
    • Langmead, B. et al. (2009a) Searching for SNPs with cloud computing. Genome Biol., 10, R134.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1
  • 3
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B. et al. (2009b) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1
  • 4
    • 77955343193 scopus 로고    scopus 로고
    • Cloud-scale RNA-sequencing differential expression analysis with Myrna
    • Langmead, B. et al. (2010) Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biol., 11, R83.
    • (2010) Genome Biol , vol.11
    • Langmead, B.1
  • 5
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 6
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: an improved ultrafast tool for short read alignment
    • Li, R. et al. (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics, 25, 1966-1967.
    • (2009) Bioinformatics , vol.25 , pp. 1966-1967
    • Li, R.1
  • 7
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. (2010) The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res., 20, 1297-1303.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 8
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D. et al. (2010) edgeR: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1
  • 9
    • 65649120715 scopus 로고    scopus 로고
    • CloudBurst: highly sensitive read mapping with MapReduce
    • Schatz, M.C. (2009) CloudBurst: highly sensitive read mapping with MapReduce. Bioinformatics, 25, 1363-1369.
    • (2009) Bioinformatics , vol.25 , pp. 1363-1369
    • Schatz, M.C.1
  • 10
    • 78650811522 scopus 로고    scopus 로고
    • An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
    • Taylor, R.C. (2010) An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics. BMC Bioinformatics, 11 (Suppl. 12), S1.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 12
    • Taylor, R.C.1
  • 11
    • 77951820899 scopus 로고    scopus 로고
    • Fast and SNP-tolerant detection of complex variants and splicing in short reads
    • Wu, T.D. and Nacu, S. (2010) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics, 26, 873-881.
    • (2010) Bioinformatics , vol.26 , pp. 873-881
    • Wu, T.D.1    Nacu, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.