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Volumn 30, Issue 1, 2014, Pages 119-120

SeqPig: Simple and scalable scripting for large sequencing data sets in hadoop

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; HIGH THROUGHPUT SCREENING; METHODOLOGY; PROCEDURES; SOFTWARE DESIGN;

EID: 84891355779     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt601     Document Type: Article
Times cited : (80)

References (13)
  • 2
    • 84873134968 scopus 로고    scopus 로고
    • Interactive analytical processing in big data systems: A crossindustry study of MapReduce workloads. In: A
    • VLDB Endowment
    • Chen, Y. et al. (2012) Interactive analytical processing in big data systems: a crossindustry study of MapReduce workloads. In: Proceedings of the VLDB Endowment. Vol. 5, VLDB Endowment, pp. 1802-1813.
    • (2012) Proceedings of the VLDB Endowment. , vol.5 , pp. 1802-1813
    • Chen, Y.1
  • 3
    • 72849149423 scopus 로고    scopus 로고
    • Searching for SNPs with cloud computing
    • Langmead, B. et al. (2009) Searching for SNPs with cloud computing. Genome Biol., 10, R134.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1
  • 4
    • 84878979335 scopus 로고    scopus 로고
    • Biology: The big challenges of big data
    • Marx, V. (2013) Biology: the big challenges of big data. Nature, 498, 255-260.
    • (2013) Nature , vol.498 , pp. 255-260
    • Marx, V.1
  • 5
    • 84859075799 scopus 로고    scopus 로고
    • Hadoop-BAM: Directly manipulating next generation sequencing data in the cloud
    • Niemenmaa, M. et al. (2012) Hadoop-BAM: directly manipulating next generation sequencing data in the cloud. Bioinformatics, 28, 876-877.
    • (2012) Bioinformatics , vol.28 , pp. 876-877
    • Niemenmaa, M.1
  • 6
    • 84890045371 scopus 로고    scopus 로고
    • BioPig: A Hadoop-based analytic toolkit for large-scale sequence data
    • Epub ahead of print, doi: 10.1093/bioinformatics/btt528, September 10 2013]
    • Nordberg, H. et al. (2013) BioPig: a Hadoop-based analytic toolkit for large-scale sequence data. Bioinformatics, [Epub ahead of print, doi: 10.1093/bioinformatics/btt528, September 10, 2013].
    • (2013) Bioinformatics
    • Nordberg, H.1
  • 7
    • 78650802666 scopus 로고    scopus 로고
    • SeqWare query engine: Storing and searching sequence data in the cloud
    • O'Connor, B. et al. (2010) SeqWare query engine: storing and searching sequence data in the cloud. BMC Bioinformatics, 11 (Suppl. 12), S2.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 12
    • O'Connor, B.1
  • 8
    • 79960410567 scopus 로고    scopus 로고
    • SEAL: A distributed short read mapping and duplicate removal tool
    • Pireddu, L. et al. (2011) SEAL: a distributed short read mapping and duplicate removal tool. Bioinformatics, 27, 2159-2160.
    • (2011) Bioinformatics , vol.27 , pp. 2159-2160
    • Pireddu, L.1
  • 9
    • 80051785560 scopus 로고    scopus 로고
    • SAMQA: Error classification and validation of highthroughput sequenced read data
    • Robinson, T. et al. (2011) SAMQA: error classification and validation of highthroughput sequenced read data. BMC Genomics, 12, 419.
    • (2011) BMC Genomics , vol.12 , pp. 419
    • Robinson, T.1
  • 10
    • 84864800625 scopus 로고    scopus 로고
    • Cloudgene: A graphical execution platformforMapReduce programs on private and public clouds
    • Schönherr, S. et al. (2012) Cloudgene: a graphical execution platformforMapReduce programs on private and public clouds. BMC Bioinformatics, 13, 200.
    • (2012) BMC Bioinformatics , vol.13 , pp. 200
    • Schönherr, S.1
  • 11
    • 77954526823 scopus 로고    scopus 로고
    • The case for cloud computing in genome informatics
    • Stein, L. (2010) The case for cloud computing in genome informatics. Genome Biol., 11, 207.
    • (2010) Genome Biol. , vol.11 , pp. 207
    • Stein, L.1
  • 12
    • 78650811522 scopus 로고    scopus 로고
    • Overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
    • Taylor, R. (2010)An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics. BMC Bioinformatics, 11 (Suppl. 12), S1.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 12
    • Taylor, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.