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Volumn 28, Issue 6, 2012, Pages 876-877

Hadoop-BAM: Directly manipulating next generation sequencing data in the cloud

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER INTERFACE; COMPUTER PROGRAM; DNA SEQUENCE; GENOME; HIGH THROUGHPUT SEQUENCING; METHODOLOGY;

EID: 84859075799     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts054     Document Type: Article
Times cited : (123)

References (10)
  • 1
    • 37549003336 scopus 로고    scopus 로고
    • MapReduce: simplified data processing on large clusters
    • Dean, J. and Ghemawat, S. (2008) MapReduce: simplified data processing on large clusters. Commun. of the ACM (CACM), 51, 107-113.
    • (2008) Commun. of the ACM (CACM) , vol.51 , pp. 107-113
    • Dean, J.1    Ghemawat, S.2
  • 2
    • 80054003242 scopus 로고    scopus 로고
    • Chipster: user-friendly analysis software for microarray and other high-throughput data
    • Kallio, A. et al. (2011) Chipster: user-friendly analysis software for microarray and other high-throughput data. BMC Genomics, 12, 507.
    • (2011) BMC Genomics , vol.12 , pp. 507
    • Kallio, A.1
  • 3
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • 1000 Genome Project Data Processing Subgroup
    • Li, H. et al. and 1000 Genome Project Data Processing Subgroup (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 4
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res., 20, 1297-1303.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 5
    • 78650802666 scopus 로고    scopus 로고
    • SeqWare Query Engine: storing and searching sequence data in the cloud
    • O'Connor, B. et al. (2010) SeqWare Query Engine: storing and searching sequence data in the cloud. BMC Bioinformatics, 11 (Suppl. 12), S2.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 12
    • O'Connor, B.1
  • 6
    • 55349148888 scopus 로고    scopus 로고
    • Pig latin: a not-so-foreign language for data processing
    • J. T. -L., Wang, (ed.), ACM, New York, NY, USA
    • Olston, C. et al. (2008) Pig latin: a not-so-foreign language for data processing. In SIGMOD Conference, J. T. -L., Wang, (ed.), ACM, New York, NY, USA, pp. 1099-1110.
    • (2008) SIGMOD Conference , pp. 1099-1110
    • Olston, C.1
  • 7
    • 79960410567 scopus 로고    scopus 로고
    • SEAL: a distributed short read mapping and duplicate removal tool
    • Pireddu, L. et al. (2011) SEAL: a distributed short read mapping and duplicate removal tool. Bioinformatics, 27, 2159-2160.
    • (2011) Bioinformatics , vol.27 , pp. 2159-2160
    • Pireddu, L.1
  • 8
    • 78650811522 scopus 로고    scopus 로고
    • An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
    • Taylor, R. (2010) An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics. BMC Bioinformatics, 11 (Suppl. 12), S1.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 12
    • Taylor, R.1
  • 9
    • 77952775707 scopus 로고    scopus 로고
    • Hive-a petabyte scale data warehouse using Hadoop
    • F. Li, et al. (eds), IEEE, Piscataway, NJ, USA
    • Thusoo, A. et al. (2010) Hive-a petabyte scale data warehouse using Hadoop. In ICDE, F. Li, et al. (eds), IEEE, Piscataway, NJ, USA, pp. 996-1005.
    • (2010) ICDE , pp. 996-1005
    • Thusoo, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.