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Volumn , Issue , 2014, Pages 184-191

A hadoop-galaxy adapter for user-friendly and scalable data-intensive bioinformatics in galaxy

Author keywords

Bioinformatics; Galaxy; Hadoop; Ngs

Indexed keywords

BIOINFORMATICS; FILE ORGANIZATION; MEDICAL INFORMATICS;

EID: 84920742580     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/2649387.2649429     Document Type: Conference Paper
Times cited : (7)

References (21)
  • 4
    • 84901376037 scopus 로고    scopus 로고
    • Galaxy + hadoop: Toward a collaborative and scalable image processing toolbox in cloud
    • A. R. Lomuscio, S. Nepal, F. Patrizi, B. Benatallah, and I. Brandic, editors, volume 8377 of Lecture Notes in Computer Science, Springer International Publishing
    • S. Chen, T. Bednarz, P. Szul, D. Wang, Y. Arzhaeva, N. Burdett, A. Khassapov, J. Zic, S. Nepal, T. Gurevey, and J. Taylor. Galaxy + Hadoop: Toward a collaborative and scalable image processing toolbox in cloud. In A. R. Lomuscio, S. Nepal, F. Patrizi, B. Benatallah, and I. Brandic, editors, Service-Oriented Computing - ICSOC 2013 Workshops, volume 8377 of Lecture Notes in Computer Science, pages 339-351. Springer International Publishing, 2014.
    • (2014) Service-Oriented Computing - ICSOC 2013 Workshops , pp. 339-351
    • Chen, S.1    Bednarz, T.2    Szul, P.3    Wang, D.4    Arzhaeva, Y.5    Burdett, N.6    Khassapov, A.7    Zic, J.8    Nepal, S.9    Gurevey, T.10    Taylor, J.11
  • 5
    • 84885126545 scopus 로고    scopus 로고
    • Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology
    • P. J. A. Cock, B. A. Grüning, K. Paszkiewicz, and L. Pritchard. Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. Peer J, 1:e167, 2013.
    • (2013) Peer J , vol.1 , pp. e167
    • Cock, P.J.A.1    Grüning, B.A.2    Paszkiewicz, K.3    Pritchard, L.4
  • 6
    • 37549003336 scopus 로고    scopus 로고
    • Mapreduce: Simplified data processing on large clusters
    • Jan
    • J. Dean and S. Ghemawat. Mapreduce: Simplified data processing on large clusters. Commun. ACM, 51(1):107-113, Jan. 2008.
    • (2008) Commun. ACM , vol.51 , Issue.1 , pp. 107-113
    • Dean, J.1    Ghemawat, S.2
  • 7
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • and the Galaxy Team
    • J. Goecks, A. Nekrutenko, J. Taylor, and the Galaxy Team. Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11(8):R86, 2010.
    • (2010) Genome Biol. , vol.11 , Issue.8 , pp. R86
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 8
    • 84907375665 scopus 로고    scopus 로고
    • Hadoop., [Online; accessed 30-May-2014]
    • Hadoop. Welcome to Apache Hadoop, 2014. [Online; accessed 30-May-2014].
    • (2014) Welcome to Apache Hadoop
  • 11
    • 84878979335 scopus 로고    scopus 로고
    • Biology: The big challenges of big data
    • June
    • V. Marx. Biology: The big challenges of big data. Nature, 498, June 2013.
    • (2013) Nature , vol.498
    • Marx, V.1
  • 12
    • 84883788980 scopus 로고    scopus 로고
    • 'Big data', hadoop and cloud computing in genomics
    • Oct
    • A. O'Driscoll, J. Daugelaite, and R. D. Sleator. 'Big Data', Hadoop and cloud computing in genomics. J. Biomed. Inform., 46(5):774-781, Oct. 2013.
    • (2013) J. Biomed. Inform. , vol.46 , Issue.5 , pp. 774-781
    • O'Driscoll, A.1    Daugelaite, J.2    Sleator, R.D.3
  • 14
    • 80053628299 scopus 로고    scopus 로고
    • Sequencing technologies and genome sequencing
    • Dec
    • C. S. Pareek, R. Smoczynski, and A. Tretyn. Sequencing technologies and genome sequencing. J. Appl. Genet., 52(4):413-435, Dec. 2011.
    • (2011) J. Appl. Genet. , vol.52 , Issue.4 , pp. 413-435
    • Pareek, C.S.1    Smoczynski, R.2    Tretyn, A.3
  • 15
    • 79960410567 scopus 로고    scopus 로고
    • Seal: A distributed short read mapping and duplicate removal tool
    • L. Pireddu, S. Leo, and G. Zanetti. Seal: A distributed short read mapping and duplicate removal tool. Bioinformatics, 27(15):2159-2160, 2011.
    • (2011) Bioinformatics , vol.27 , Issue.15 , pp. 2159-2160
    • Pireddu, L.1    Leo, S.2    Zanetti, G.3
  • 16
    • 84905178199 scopus 로고    scopus 로고
    • O'Reilly Media, Inc. 1st edition
    • E. Sammer. Hadoop Operations. O'Reilly Media, Inc., 1st edition, 2012.
    • (2012) Hadoop Operations
    • Sammer, E.1
  • 19
    • 84873801934 scopus 로고    scopus 로고
    • High-throughput sequencing for biology and medicine
    • Jan
    • W. W. Soon, M. Hariharan, and M. P. Snyder. High-throughput sequencing for biology and medicine. Mol. Syst. Biol., 9:640, Jan. 2013.
    • (2013) Mol. Syst. Biol. , vol.9 , pp. 640
    • Soon, W.W.1    Hariharan, M.2    Snyder, M.P.3
  • 20
    • 79960646589 scopus 로고    scopus 로고
    • The fourth paradigm: Data-intensive scientific discovery
    • K. M. Tolle, D. S. W. Tansley, and A. J. G. Hey. The Fourth Paradigm: Data-Intensive Scientific Discovery. Proc. IEEE, 99(8):1334-1337, 2011.
    • (2011) Proc. IEEE , vol.99 , Issue.8 , pp. 1334-1337
    • Tolle, K.M.1    Tansley, D.S.W.2    Hey, A.J.G.3
  • 21
    • 84920728798 scopus 로고    scopus 로고
    • Wikipedia[Online; accessed 28-May-2014].
    • Wikipedia. David Wheeler (computer scientist), 2014. [Online; accessed 28-May-2014].
    • (2014) David Wheeler (Computer Scientist)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.