-
1
-
-
33845321413
-
The emergence of antibiotic resistance by mutation
-
Woodford N, Ellington MJ (2007) The emergence of antibiotic resistance by mutation. Clin Microbiol Infect 13(1):5-18.
-
(2007)
Clin Microbiol Infect
, vol.13
, Issue.1
, pp. 5-18
-
-
Woodford, N.1
Ellington, M.J.2
-
2
-
-
84871912998
-
Isolation and characterization of methicillin-resistant staphylococcus aureus from pork farms and visiting veterinary students
-
Frana TS, et al. (2013) Isolation and characterization of methicillin-resistant Staphylococcus aureus from pork farms and visiting veterinary students. PLoS One 8(1):e53738.
-
(2013)
PLoS One
, vol.8
, Issue.1
, pp. e53738
-
-
Frana, T.S.1
-
3
-
-
84901305742
-
Insects represent a link between food animal farms and the urban environment for antibiotic resistance traits
-
Zurek L, Ghosh A (2014) Insects represent a link between food animal farms and the urban environment for antibiotic resistance traits. Appl Environ Microbiol 80(12):3562-3567.
-
(2014)
Appl Environ Microbiol
, vol.80
, Issue.12
, pp. 3562-3567
-
-
Zurek, L.1
Ghosh, A.2
-
4
-
-
84943277121
-
From whence they came-Antibiotic-resistant Escherichia coli in african wildlife
-
Jobbins SE, Alexander KA (2015) From whence they came-Antibiotic-resistant Escherichia coli in African wildlife. J Wildl Dis 51(4):811-820.
-
(2015)
J Wildl Dis
, vol.51
, Issue.4
, pp. 811-820
-
-
Jobbins, S.E.1
Alexander, K.A.2
-
5
-
-
84922464366
-
Do human extraintestinal Escherichia coli infections resistant to expanded-spectrum cephalosporins originate from food-producing animals? A systematic review
-
Lazarus B, Paterson DL, Mollinger JL, Rogers BA (2015) Do human extraintestinal Escherichia coli infections resistant to expanded-spectrum cephalosporins originate from food-producing animals? A systematic review. Clin Infect Dis 60(3):439-452.
-
(2015)
Clin Infect Dis
, vol.60
, Issue.3
, pp. 439-452
-
-
Lazarus, B.1
Paterson, D.L.2
Mollinger, J.L.3
Rogers, B.A.4
-
6
-
-
84905397156
-
Eight more ways to deal with antibiotic resistance
-
Metz M, Shlaes DM (2014) Eight more ways to deal with antibiotic resistance. Antimicrob Agents Chemother 58(8):4253-4256.
-
(2014)
Antimicrob Agents Chemother
, vol.58
, Issue.8
, pp. 4253-4256
-
-
Metz, M.1
Shlaes, D.M.2
-
7
-
-
0028204781
-
Mismatch repair proteins muts and mutl inhibit reca-catalyzed strand transfer between diverged dnas
-
Worth L, Jr., Clark S, Radman M, Modrich P (1994) Mismatch repair proteins MutS and MutL inhibit RecA-catalyzed strand transfer between diverged DNAs. Proc Natl Acad Sci USA 91(8):3238-3241.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, Issue.8
, pp. 3238-3241
-
-
Worth, L.1
Clark, S.2
Radman, M.3
Modrich, P.4
-
8
-
-
0036264163
-
The fate of microbial mutators
-
de Visser JA (2002) The fate of microbial mutators. Microbiology 148(Pt 5):1247-1252.
-
(2002)
Microbiology
, vol.148
, pp. 1247-1252
-
-
De Visser, J.A.1
-
9
-
-
0034685940
-
High frequency of hypermutable pseudomonas aeruginosa in cystic fibrosis lung infection
-
Oliver A, Cantón R, Campo P, Baquero F, Blázquez J (2000) High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. Science 288(5469): 1251-1254.
-
(2000)
Science
, vol.288
, Issue.5469
, pp. 1251-1254
-
-
Oliver, A.1
Cantón, R.2
Campo, P.3
Baquero, F.4
Blázquez, J.5
-
10
-
-
34547511450
-
Complete genetic linkage can subvert natural selection
-
Gerrish PJ, Colato A, Perelson AS, Sniegowski PD (2007) Complete genetic linkage can subvert natural selection. Proc Natl Acad Sci USA 104(15):6266-6271.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.15
, pp. 6266-6271
-
-
Gerrish, P.J.1
Colato, A.2
Perelson, A.S.3
Sniegowski, P.D.4
-
11
-
-
0036167884
-
Mutator bacteria as a risk factor in treatment of infectious diseases
-
Giraud A, Matic I, Radman M, Fons M, Taddei F (2002) Mutator bacteria as a risk factor in treatment of infectious diseases. Antimicrob Agents Chemother 46(3): 863-865.
-
(2002)
Antimicrob Agents Chemother
, vol.46
, Issue.3
, pp. 863-865
-
-
Giraud, A.1
Matic, I.2
Radman, M.3
Fons, M.4
Taddei, F.5
-
12
-
-
84882317549
-
Sublethal ciprofloxacin treatment leads to rapid development of high-level ciprofloxacin resistance during long-term experimental evolution of pseudomonas aeruginosa
-
Jørgensen KM, et al. (2013) Sublethal ciprofloxacin treatment leads to rapid development of high-level ciprofloxacin resistance during long-term experimental evolution of Pseudomonas aeruginosa. Antimicrob Agents Chemother 57(9):4215-4221.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, Issue.9
, pp. 4215-4221
-
-
Jørgensen, K.M.1
-
13
-
-
84868103205
-
Antimicrobials as promoters of genetic variation
-
Blázquez J, Couce A, Rodríguez-Beltrán J, Rodríguez-Rojas A (2012) Antimicrobials as promoters of genetic variation. Curr Opin Microbiol 15(5):561-569.
-
(2012)
Curr Opin Microbiol
, vol.15
, Issue.5
, pp. 561-569
-
-
Blázquez, J.1
Couce, A.2
Rodríguez-Beltrán, J.3
Rodríguez-Rojas, A.4
-
14
-
-
0024546107
-
Mechanism of inhibition of DNA gyrase by quinolone antibacterials: A cooperative drug-DNA binding model
-
Shen LL, et al. (1989) Mechanism of inhibition of DNA gyrase by quinolone antibacterials: A cooperative drug-DNA binding model. Biochemistry 28(9):3886-3894.
-
(1989)
Biochemistry
, vol.28
, Issue.9
, pp. 3886-3894
-
-
Shen, L.L.1
-
15
-
-
0022638251
-
Genetic and biochemical characterization of norfloxacin resistance in Escherichia coli
-
Hooper DC, et al. (1986) Genetic and biochemical characterization of norfloxacin resistance in Escherichia coli. Antimicrob Agents Chemother 29(4):639-644.
-
(1986)
Antimicrob Agents Chemother
, vol.29
, Issue.4
, pp. 639-644
-
-
Hooper, D.C.1
-
16
-
-
0021591841
-
Investigations into the mechanism of action of the antibacterial agent norfloxacin
-
Crumplin GC, Kenwright M, Hirst T (1984) Investigations into the mechanism of action of the antibacterial agent norfloxacin. J Antimicrob Chemother 13(Suppl B):9-23.
-
(1984)
J Antimicrob Chemother
, vol.13
, pp. 9-23
-
-
Crumplin, G.C.1
Kenwright, M.2
Hirst, T.3
-
17
-
-
77957740230
-
Evolving views of DNA replication (in)fidelity
-
Kunkel TA (2009) Evolving views of DNA replication (in)fidelity. Cold Spring Harb Symp Quant Biol 74:91-101.
-
(2009)
Cold Spring Harb Symp Quant Biol
, vol.74
, pp. 91-101
-
-
Kunkel, T.A.1
-
18
-
-
0023574404
-
Induction of the sos response by new 4-quinolones
-
Phillips I, Culebras E, Moreno F, Baquero F (1987) Induction of the SOS response by new 4-quinolones. J Antimicrob Chemother 20(5):631-638.
-
(1987)
J Antimicrob Chemother
, vol.20
, Issue.5
, pp. 631-638
-
-
Phillips, I.1
Culebras, E.2
Moreno, F.3
Baquero, F.4
-
19
-
-
0016604616
-
Sos repair hypothesis phenomenology of an inducible DNA repair which is accompanied by mutagenesis
-
Radman M (1975) SOS repair hypothesis: Phenomenology of an inducible DNA repair which is accompanied by mutagenesis. Basic Life Sci 5A:355-367.
-
(1975)
Basic Life Sci
, vol.5 A
, pp. 355-367
-
-
Radman, M.1
-
20
-
-
38649088911
-
Quinolone-mediated bacterial death
-
Drlica K, Malik M, Kerns RJ, Zhao X (2008) Quinolone-mediated bacterial death. Antimicrob Agents Chemother 52(2):385-392.
-
(2008)
Antimicrob Agents Chemother
, vol.52
, Issue.2
, pp. 385-392
-
-
Drlica, K.1
Malik, M.2
Kerns, R.J.3
Zhao, X.4
-
21
-
-
67849086820
-
Dinb upregulation is the sole role of the sos response in stress-induced mutagenesis in Escherichia coli
-
Galhardo RS, et al. (2009) DinB upregulation is the sole role of the SOS response in stress-induced mutagenesis in Escherichia coli. Genetics 182(1):55-68.
-
(2009)
Genetics
, vol.182
, Issue.1
, pp. 55-68
-
-
Galhardo, R.S.1
-
22
-
-
0034669125
-
All three sos-inducible DNA polymerases (pol II, pol IV and pol v) are involved in induced mutagenesis
-
Napolitano R, Janel-Bintz R, Wagner J, Fuchs RP (2000) All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis. EMBO J 19(22):6259-6265.
-
(2000)
EMBO J
, vol.19
, Issue.22
, pp. 6259-6265
-
-
Napolitano, R.1
Janel-Bintz, R.2
Wagner, J.3
Fuchs, R.P.4
-
23
-
-
75949092532
-
Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis
-
Kohanski MA, DePristo MA, Collins JJ (2010) Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis. Mol Cell 37(3):311-320.
-
(2010)
Mol Cell
, vol.37
, Issue.3
, pp. 311-320
-
-
Kohanski, M.A.1
DePristo, M.A.2
Collins, J.J.3
-
25
-
-
84901059678
-
Antibiotics induce redox-related physiological alterations as part of their lethality
-
Dwyer DJ, et al. (2014) Antibiotics induce redox-related physiological alterations as part of their lethality. Proc Natl Acad Sci USA 111(20):E2100-E2109.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.20
, pp. E2100-E2109
-
-
Dwyer, D.J.1
-
26
-
-
33947268165
-
Antibiotic-mediated recombination: Ciprofloxacin stimulates sos-independent recombination of divergent sequences in Escherichia coli
-
López E, Elez M, Matic I, Blázquez J (2007) Antibiotic-mediated recombination: Ciprofloxacin stimulates SOS-independent recombination of divergent sequences in Escherichia coli. Mol Microbiol 64(1):83-93.
-
(2007)
Mol Microbiol
, vol.64
, Issue.1
, pp. 83-93
-
-
López, E.1
Elez, M.2
Matic, I.3
Blázquez, J.4
-
27
-
-
84867339877
-
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
-
Lee H, Popodi E, Tang H, Foster PL (2012) Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc Natl Acad Sci USA 109(41):E2774-E2783.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.41
, pp. E2774-E2783
-
-
Lee, H.1
Popodi, E.2
Tang, H.3
Foster, P.L.4
-
28
-
-
84936850349
-
Asymmetric context-dependent mutation patterns revealed through mutation-Accumulation experiments
-
Sung W, et al. (2015) Asymmetric context-dependent mutation patterns revealed through mutation-Accumulation experiments. Mol Biol Evol 32(7):1672-1683.
-
(2015)
Mol Biol Evol
, vol.32
, Issue.7
, pp. 1672-1683
-
-
Sung, W.1
-
29
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
Drake JW (1991) A constant rate of spontaneous mutation in DNA-based microbes. Proc Natl Acad Sci USA 88(16):7160-7164.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, Issue.16
, pp. 7160-7164
-
-
Drake, J.W.1
-
30
-
-
0027968460
-
Fluctuation tests: How reliable are the estimates of mutation rates?
-
Stewart FM (1994) Fluctuation tests: How reliable are the estimates of mutation rates? Genetics 137(4):1139-1146.
-
(1994)
Genetics
, vol.137
, Issue.4
, pp. 1139-1146
-
-
Stewart, F.M.1
-
31
-
-
0029931416
-
Estimate of the genomic mutation rate deleterious to overall fitness in e. Coli
-
Kibota TT, Lynch M (1996) Estimate of the genomic mutation rate deleterious to overall fitness in E. coli. Nature 381(6584):694-696.
-
(1996)
Nature
, vol.381
, Issue.6584
, pp. 694-696
-
-
Kibota, T.T.1
Lynch, M.2
-
32
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
Lynch M, et al. (2008) A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc Natl Acad Sci USA 105(27):9272-9277.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.27
, pp. 9272-9277
-
-
Lynch, M.1
-
33
-
-
84941668361
-
The spontaneous mutation rate in the fission yeast schizosaccharomyces pombe
-
Farlow A, et al. (2015) The spontaneous mutation rate in the fission yeast Schizosaccharomyces pombe. Genetics 201(2):737-744.
-
(2015)
Genetics
, vol.201
, Issue.2
, pp. 737-744
-
-
Farlow, A.1
-
34
-
-
84907969495
-
Spontaneous mutation accumulation in multiple strains of the green alga, chlamydomonas reinhardtii
-
Morgan AD, Ness RW, Keightley PD, Colegrave N (2014) Spontaneous mutation accumulation in multiple strains of the green alga, Chlamydomonas reinhardtii. Evolution 68(9):2589-2602.
-
(2014)
Evolution
, vol.68
, Issue.9
, pp. 2589-2602
-
-
Morgan, A.D.1
Ness, R.W.2
Keightley, P.D.3
Colegrave, N.4
-
35
-
-
84868599895
-
Drift-barrier hypothesis and mutation-rate evolution
-
Sung W, Ackerman MS, Miller SF, Doak TG, Lynch M (2012) Drift-barrier hypothesis and mutation-rate evolution. Proc Natl Acad Sci USA 109(45):18488-18492.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.45
, pp. 18488-18492
-
-
Sung, W.1
Ackerman, M.S.2
Miller, S.F.3
Doak, T.G.4
Lynch, M.5
-
36
-
-
84859958491
-
Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics
-
Foti JJ, Devadoss B, Winkler JA, Collins JJ, Walker GC (2012) Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics. Science 336(6079): 315-319.
-
(2012)
Science
, vol.336
, Issue.6079
, pp. 315-319
-
-
Foti, J.J.1
Devadoss, B.2
Winkler, J.A.3
Collins, J.J.4
Walker, G.C.5
-
37
-
-
0020661994
-
Norfloxacin disposition after sequentially increasing oral doses
-
Swanson BN, Boppana VK, Vlasses PH, Rotmensch HH, Ferguson RK (1983) Norfloxacin disposition after sequentially increasing oral doses. Antimicrob Agents Chemother 23(2):284-288.
-
(1983)
Antimicrob Agents Chemother
, vol.23
, Issue.2
, pp. 284-288
-
-
Swanson, B.N.1
Boppana, V.K.2
Vlasses, P.H.3
Rotmensch, H.H.4
Ferguson, R.K.5
-
38
-
-
77951697965
-
Spontaneous mutation accumulation studies in evolutionary genetics
-
Halligan DL, Keightley PD (2009) Spontaneous mutation accumulation studies in evolutionary genetics. Annu Rev Ecol Evol Syst 40:151-172.
-
(2009)
Annu Rev Ecol Evol Syst
, vol.40
, pp. 151-172
-
-
Halligan, D.L.1
Keightley, P.D.2
-
39
-
-
84943608703
-
Background mutational features of the radiation-resistant bacterium deinococcus radiodurans
-
Long H, et al. (2015) Background mutational features of the radiation-resistant bacterium Deinococcus radiodurans. Mol Biol Evol 32(9):2383-2392.
-
(2015)
Mol Biol Evol
, vol.32
, Issue.9
, pp. 2383-2392
-
-
Long, H.1
-
40
-
-
0031718740
-
Influence of the uv-Activated sos response on the gamma-radiation-induced mutation spectrum in the laci gene
-
Wijker CA, Lafleur MV (1998) Influence of the UV-Activated SOS response on the gamma-radiation-induced mutation spectrum in the lacI gene. Mutat Res 408(3): 195-201.
-
(1998)
Mutat Res
, vol.408
, Issue.3
, pp. 195-201
-
-
Wijker, C.A.1
Lafleur, M.V.2
-
41
-
-
0021858490
-
Induction of transversion mutations in Escherichia coli by n-methyl-n?-nitro-n-nitrosoguanidine is sos dependent
-
Foster PL, Eisenstadt E (1985) Induction of transversion mutations in Escherichia coli by N-methyl-N?-nitro-N-nitrosoguanidine is SOS dependent. J Bacteriol 163(1): 213-220.
-
(1985)
J Bacteriol
, vol.163
, Issue.1
, pp. 213-220
-
-
Foster, P.L.1
Eisenstadt, E.2
-
42
-
-
0029943449
-
Mismatch repair in replication fidelity, genetic recombination, and cancer biology
-
Modrich P, Lahue R (1996) Mismatch repair in replication fidelity, genetic recombination, and cancer biology. Annu Rev Biochem 65:101-133.
-
(1996)
Annu Rev Biochem
, vol.65
, pp. 101-133
-
-
Modrich, P.1
Lahue, R.2
-
43
-
-
0030690927
-
Genetic requirements and mutational specificity of the Escherichia coli sos mutator activity
-
Fijalkowska IJ, Dunn RL, Schaaper RM (1997) Genetic requirements and mutational specificity of the Escherichia coli SOS mutator activity. J Bacteriol 179(23):7435-7445.
-
(1997)
J Bacteriol
, vol.179
, Issue.23
, pp. 7435-7445
-
-
Fijalkowska, I.J.1
Dunn, R.L.2
Schaaper, R.M.3
-
44
-
-
0035023305
-
Comparative gene expression profiles following uv exposure in wild-type and sos-deficient Escherichia coli
-
Courcelle J, Khodursky A, Peter B, Brown PO, Hanawalt PC (2001) Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics 158(1):41-64.
-
(2001)
Genetics
, vol.158
, Issue.1
, pp. 41-64
-
-
Courcelle, J.1
Khodursky, A.2
Peter, B.3
Brown, P.O.4
Hanawalt, P.C.5
-
45
-
-
0019185245
-
Identification of a novel genetic element in Escherichia coli k-12
-
Greener A, Hill CW (1980) Identification of a novel genetic element in Escherichia coli K-12. J Bacteriol 144(1):312-321.
-
(1980)
J Bacteriol
, vol.144
, Issue.1
, pp. 312-321
-
-
Greener, A.1
Hill, C.W.2
-
46
-
-
0016681047
-
Is1 is involved in deletion formation in the gal region of e. Coli k12
-
Reif HJ, Saedler H (1975) IS1 is involved in deletion formation in the gal region of E. coli K12. Mol Gen Genet 137(1):17-28.
-
(1975)
Mol Gen Genet
, vol.137
, Issue.1
, pp. 17-28
-
-
Reif, H.J.1
Saedler, H.2
-
47
-
-
58149284239
-
DNA polymerase switching: Effects on spontaneous mutagenesis in Escherichia coli
-
Curti E, McDonald JP, Mead S, Woodgate R (2009) DNA polymerase switching: Effects on spontaneous mutagenesis in Escherichia coli. Mol Microbiol 71(2):315-331.
-
(2009)
Mol Microbiol
, vol.71
, Issue.2
, pp. 315-331
-
-
Curti, E.1
McDonald, J.P.2
Mead, S.3
Woodgate, R.4
-
48
-
-
0023410420
-
Spectra of spontaneous mutations in Escherichia coli strains defective in mismatch correction: The nature of in vivo DNA replication errors
-
Schaaper RM, Dunn RL (1987) Spectra of spontaneous mutations in Escherichia coli strains defective in mismatch correction: The nature of in vivo DNA replication errors. Proc Natl Acad Sci USA 84(17):6220-6224.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, Issue.17
, pp. 6220-6224
-
-
Schaaper, R.M.1
Dunn, R.L.2
-
49
-
-
0030475264
-
Specific recognition of a/g and a/7,8-dihydro-8-oxoguanine (8-oxog) mismatches by Escherichia coli muty: Removal of the c-terminal domain preferentially affects a/8-oxog recognition
-
Gogos A, Cillo J, Clarke ND, Lu AL (1996) Specific recognition of A/G and A/7,8-dihydro-8-oxoguanine (8-oxoG) mismatches by Escherichia coli MutY: Removal of the C-terminal domain preferentially affects A/8-oxoG recognition. Biochemistry 35(51):16665-16671.
-
(1996)
Biochemistry
, vol.35
, Issue.51
, pp. 16665-16671
-
-
Gogos, A.1
Cillo, J.2
Clarke, N.D.3
Lu, A.L.4
-
50
-
-
0026684849
-
Evidence that muty and mutm combine to prevent mutations by an oxidatively damaged form of guanine in DNA
-
Michaels ML, Cruz C, Grollman AP, Miller JH (1992) Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA. Proc Natl Acad Sci USA 89(15):7022-7025.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, Issue.15
, pp. 7022-7025
-
-
Michaels, M.L.1
Cruz, C.2
Grollman, A.P.3
Miller, J.H.4
-
51
-
-
0027324378
-
Mutagenesis by 8-oxoguanine: An enemy within
-
Grollman AP, Moriya M (1993) Mutagenesis by 8-oxoguanine: An enemy within. Trends Genet 9(7):246-249.
-
(1993)
Trends Genet
, vol.9
, Issue.7
, pp. 246-249
-
-
Grollman, A.P.1
Moriya, M.2
-
52
-
-
84946567350
-
Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing
-
Foster PL, Lee H, Popodi E, Townes JP, Tang H (2015) Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing. Proc Natl Acad Sci USA 112(44):E5990-E5999.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, Issue.44
, pp. E5990-E5999
-
-
Foster, P.L.1
Lee, H.2
Popodi, E.3
Townes, J.P.4
Tang, H.5
-
53
-
-
0043198111
-
Muty is down-regulated by oxidative stress in e. Coli
-
Yoon SH, et al. (2003) MutY is down-regulated by oxidative stress in E. coli. Free Radic Res 37(8):873-879.
-
(2003)
Free Radic Res
, vol.37
, Issue.8
, pp. 873-879
-
-
Yoon, S.H.1
-
54
-
-
0031407768
-
DNA gyrase, topoisomerase IV, and the 4-quinolones
-
Drlica K, Zhao X (1997) DNA gyrase, topoisomerase IV, and the 4-quinolones. Microbiol Mol Biol Rev 61(3):377-392.
-
(1997)
Microbiol Mol Biol Rev
, vol.61
, Issue.3
, pp. 377-392
-
-
Drlica, K.1
Zhao, X.2
-
55
-
-
0033081949
-
Mechanisms of fluoroquinolone resistance
-
Hooper DC (1999) Mechanisms of fluoroquinolone resistance. Drug Resist Updat 2(1): 38-55.
-
(1999)
Drug Resist Updat
, vol.2
, Issue.1
, pp. 38-55
-
-
Hooper, D.C.1
-
56
-
-
0030029513
-
Acrab efflux pump plays a major role in the antibiotic resistance phenotype of Escherichia coli multiple-Antibiotic-resistance (mar) mutants
-
Okusu H, Ma D, Nikaido H (1996) AcrAB efflux pump plays a major role in the antibiotic resistance phenotype of Escherichia coli multiple-Antibiotic-resistance (Mar) mutants. J Bacteriol 178(1):306-308.
-
(1996)
J Bacteriol
, vol.178
, Issue.1
, pp. 306-308
-
-
Okusu, H.1
Ma, D.2
Nikaido, H.3
-
57
-
-
0025328143
-
Mapping of insertion element is5 in the Escherichia coli k-12 chromosome. Chromosomal rearrangements mediated by is5
-
Umeda M, Ohtsubo E (1990) Mapping of insertion element IS5 in the Escherichia coli K-12 chromosome. Chromosomal rearrangements mediated by IS5. J Mol Biol 213(2): 229-237.
-
(1990)
J Mol Biol
, vol.213
, Issue.2
, pp. 229-237
-
-
Umeda, M.1
Ohtsubo, E.2
-
58
-
-
0028986717
-
Emre, an Escherichia coli 12-kda multidrug transporter, exchanges toxic cations and h+ and is soluble in organic solvents
-
Yerushalmi H, Lebendiker M, Schuldiner S (1995) EmrE, an Escherichia coli 12-kDa multidrug transporter, exchanges toxic cations and H+ and is soluble in organic solvents. J Biol Chem 270(12):6856-6863.
-
(1995)
J Biol Chem
, vol.270
, Issue.12
, pp. 6856-6863
-
-
Yerushalmi, H.1
Lebendiker, M.2
Schuldiner, S.3
-
59
-
-
0035086501
-
Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes
-
Sulavik MC, et al. (2001) Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes. Antimicrob Agents Chemother 45(4):1126-1136.
-
(2001)
Antimicrob Agents Chemother
, vol.45
, Issue.4
, pp. 1126-1136
-
-
Sulavik, M.C.1
-
60
-
-
0034817367
-
Analysis of a complete library of putative drug transporter genes in Escherichia coli
-
Nishino K, Yamaguchi A (2001) Analysis of a complete library of putative drug transporter genes in Escherichia coli. J Bacteriol 183(20):5803-5812.
-
(2001)
J Bacteriol
, vol.183
, Issue.20
, pp. 5803-5812
-
-
Nishino, K.1
Yamaguchi, A.2
-
61
-
-
67651204792
-
Bacterial gene amplification: Implications for the evolution of antibiotic resistance
-
Sandegren L, Andersson DI (2009) Bacterial gene amplification: Implications for the evolution of antibiotic resistance. Nat Rev Microbiol 7(8):578-588.
-
(2009)
Nat Rev Microbiol
, vol.7
, Issue.8
, pp. 578-588
-
-
Sandegren, L.1
Andersson, D.I.2
-
62
-
-
0025282176
-
Quinolone resistancedetermining region in the DNA gyrase gyra gene of Escherichia coli
-
Yoshida H, Bogaki M, Nakamura M, Nakamura S (1990) Quinolone resistancedetermining region in the DNA gyrase gyrA gene of Escherichia coli. Antimicrob Agents Chemother 34(6):1271-1272.
-
(1990)
Antimicrob Agents Chemother
, vol.34
, Issue.6
, pp. 1271-1272
-
-
Yoshida, H.1
Bogaki, M.2
Nakamura, M.3
Nakamura, S.4
-
63
-
-
84874193830
-
Evaluating evolutionary models of stress-induced mutagenesis in bacteria
-
MacLean RC, Torres-Barceló C, Moxon R (2013) Evaluating evolutionary models of stress-induced mutagenesis in bacteria. Nat Rev Genet 14(3):221-227.
-
(2013)
Nat Rev Genet
, vol.14
, Issue.3
, pp. 221-227
-
-
MacLean, R.C.1
Torres-Barceló, C.2
Moxon, R.3
-
64
-
-
84875876463
-
Lactam antibiotics promote bacterial mutagenesis via an rpos-mediated reduction in replication fidelity
-
Gutierrez A, et al. (2013) ?-Lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity. Nat Commun 4:1610.
-
(2013)
Nat Commun
, vol.4
, pp. 1610
-
-
Gutierrez, A.1
-
66
-
-
0028918783
-
The use and misuse of new antibiotics a perspective
-
Joshi N, Milfred D (1995) The use and misuse of new antibiotics. A perspective. Arch Intern Med 155(6):569-577.
-
(1995)
Arch Intern Med
, vol.155
, Issue.6
, pp. 569-577
-
-
Joshi, N.1
Milfred, D.2
-
67
-
-
79251538660
-
Rapid and highly efficient method for scarless mutagenesis within the salmonella enterica chromosome
-
Blank K, Hensel M, Gerlach RG (2011) Rapid and highly efficient method for scarless mutagenesis within the Salmonella enterica chromosome. PLoS One 6(1):e15763.
-
(2011)
PLoS One
, vol.6
, Issue.1
, pp. e15763
-
-
Blank, K.1
Hensel, M.2
Gerlach, R.G.3
-
68
-
-
0034924241
-
Determination of minimum inhibitory concentrations
-
Andrews JM (2001) Determination of minimum inhibitory concentrations. J Antimicrob Chemother 48(Suppl 1):5-16.
-
(2001)
J Antimicrob Chemother
, vol.48
, pp. 5-16
-
-
Andrews, J.M.1
-
69
-
-
0035544558
-
The probability that beneficial mutations are lost in populations with periodic bottlenecks
-
Wahl LM, Gerrish PJ (2001) The probability that beneficial mutations are lost in populations with periodic bottlenecks. Evolution 55(12):2606-2610.
-
(2001)
Evolution
, vol.55
, Issue.12
, pp. 2606-2610
-
-
Wahl, L.M.1
Gerrish, P.J.2
-
70
-
-
84905049901
-
Trimmomatic: A flexible trimmer for illumina sequence data
-
Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 30(15):2114-2120.
-
(2014)
Bioinformatics
, vol.30
, Issue.15
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
71
-
-
67649884743
-
Fast and accurate short read alignment with burrows-wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14):1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
72
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43(5):491-498.
-
(2011)
Nat Genet
, vol.43
, Issue.5
, pp. 491-498
-
-
DePristo, M.A.1
-
73
-
-
77956295988
-
The genome analysis toolkit: A mapreduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, et al. (2010) The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20(9):1297-1303.
-
(2010)
Genome Res
, vol.20
, Issue.9
, pp. 1297-1303
-
-
McKenna, A.1
-
74
-
-
69549116107
-
Breakdancer: An algorithm for high-resolution mapping of genomic structural variation
-
Chen K, et al. (2009) BreakDancer: An algorithm for high-resolution mapping of genomic structural variation. Nat Methods 6(9):677-681.
-
(2009)
Nat Methods
, vol.6
, Issue.9
, pp. 677-681
-
-
Chen, K.1
-
75
-
-
70350694443
-
Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye K, Schulz MH, Long Q, Apweiler R, Ning Z (2009) Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25(21):2865-2871.
-
(2009)
Bioinformatics
, vol.25
, Issue.21
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
Long, Q.3
Apweiler, R.4
Ning, Z.5
-
76
-
-
84896786332
-
Detection of structural variants involving repetitive regions in the reference genome
-
Lee H, Popodi E, Foster PL, Tang H (2014) Detection of structural variants involving repetitive regions in the reference genome. J Comput Biol 21(3):219-233.
-
(2014)
J Comput Biol
, vol.21
, Issue.3
, pp. 219-233
-
-
Lee, H.1
Popodi, E.2
Foster, P.L.3
Tang, H.4
-
77
-
-
0035710746
-
Analysis of relative gene expression data using realtime quantitative PCR and the 2(?delta delta c(t)) method
-
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using realtime quantitative PCR and the 2(?Delta Delta C(T)) method. Methods 25(4):402-408.
-
(2001)
Methods
, vol.25
, Issue.4
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
78
-
-
33644844649
-
Statistical analysis of real-time PCR data
-
Yuan JS, Reed A, Chen F, Stewart CN, Jr. (2006) Statistical analysis of real-time PCR data. BMC Bioinformatics 7:85.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 85
-
-
Yuan, J.S.1
Reed, A.2
Chen, F.3
Stewart, C.N.4
-
79
-
-
65449136284
-
Tophat: Discovering splice junctions with RNA-seq
-
Trapnell C, Pachter L, Salzberg SL (2009) TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25(9):1105-1111.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
80
-
-
77952123055
-
Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28(5):511-515.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.5
, pp. 511-515
-
-
Trapnell, C.1
-
81
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using david bioinformatics resources
-
Huang W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4(1):44-57.
-
(2009)
Nat Protoc
, vol.4
, Issue.1
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
82
-
-
84965039431
-
-
R Development Core Team (R Foundation for Statistical Computing, Vienna
-
R Development Core Team (2014) R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, Vienna).
-
(2014)
R: A Language and Environment for Statistical Computing
-
-
|