-
1
-
-
33745874687
-
Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer
-
Lin Z., et al. Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:10328-10333.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 10328-10333
-
-
Lin, Z.1
-
2
-
-
55449115425
-
Comparative and evolutionary analysis of the bacterial homologous recombination systems
-
Rocha E.P., et al. Comparative and evolutionary analysis of the bacterial homologous recombination systems. PLoS Genet. 2005, 1:e15.
-
(2005)
PLoS Genet.
, vol.1
, pp. e15
-
-
Rocha, E.P.1
-
3
-
-
79952806659
-
Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees
-
Wu D., et al. Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees. PLoS ONE 2011, 6:e18011.
-
(2011)
PLoS ONE
, vol.6
, pp. e18011
-
-
Wu, D.1
-
4
-
-
84875946720
-
Reevaluation of the evolutionary events within recA/RAD51 phylogeny
-
Chintapalli S.V., et al. Reevaluation of the evolutionary events within recA/RAD51 phylogeny. BMC Genomics 2013, 14:240.
-
(2013)
BMC Genomics
, vol.14
, pp. 240
-
-
Chintapalli, S.V.1
-
5
-
-
0001865832
-
DNA strand exchange proteins: a biochemical and physical comparison
-
Bianco P.R., et al. DNA strand exchange proteins: a biochemical and physical comparison. Front. Biosci. 1998, 3:D570-D603.
-
(1998)
Front. Biosci.
, vol.3
, pp. D570-D603
-
-
Bianco, P.R.1
-
7
-
-
84961275699
-
Recombinational branch migration by the RadA/Sms paralog of RecA in Escherichia coli
-
Cooper D.L., Lovett S.T. Recombinational branch migration by the RadA/Sms paralog of RecA in Escherichia coli. eLife 2016, 5:e10807.
-
(2016)
eLife
, vol.5
, pp. e10807
-
-
Cooper, D.L.1
Lovett, S.T.2
-
8
-
-
84908445488
-
Mediators of homologous DNA pairing
-
Zelensky A., et al. Mediators of homologous DNA pairing. Cold Spring Harb. Perspect. Biol. 2014, 6:a016451.
-
(2014)
Cold Spring Harb. Perspect. Biol.
, vol.6
, pp. a016451
-
-
Zelensky, A.1
-
9
-
-
80855132890
-
Rad51 paralogues Rad55-Rad57 balance the antirecombinase Srs2 in Rad51 filament formation
-
Liu J., et al. Rad51 paralogues Rad55-Rad57 balance the antirecombinase Srs2 in Rad51 filament formation. Nature 2011, 479:245-248.
-
(2011)
Nature
, vol.479
, pp. 245-248
-
-
Liu, J.1
-
10
-
-
84926432359
-
Homologous recombination and human health: the roles of BRCA1, BRCA2, and associated proteins
-
Prakash R., et al. Homologous recombination and human health: the roles of BRCA1, BRCA2, and associated proteins. Cold Spring Harb. Perspect. Biol. 2015, 7:a016600.
-
(2015)
Cold Spring Harb. Perspect. Biol.
, vol.7
, pp. a016600
-
-
Prakash, R.1
-
11
-
-
84946423579
-
An overview of the molecular mechanisms of recombinational DNA repair
-
Kowalczykowski S.C. An overview of the molecular mechanisms of recombinational DNA repair. Cold Spring Harb. Perspect. Biol. 2015, 7:a016410.
-
(2015)
Cold Spring Harb. Perspect. Biol.
, vol.7
, pp. a016410
-
-
Kowalczykowski, S.C.1
-
12
-
-
84974715499
-
Mechanics and single-molecule interrogation of DNA recombination
-
Published online April 18, 2016
-
Bell J.C., Kowalczykowski S.C. Mechanics and single-molecule interrogation of DNA recombination. Annu. Rev. Biochem. 2016, Published online April 18, 2016. 10.1146/annurev-biochem-060614-034352.
-
(2016)
Annu. Rev. Biochem.
-
-
Bell, J.C.1
Kowalczykowski, S.C.2
-
13
-
-
84893945960
-
RecA bundles mediate homology pairing between distant sisters during DNA break repair
-
Lesterlin C., et al. RecA bundles mediate homology pairing between distant sisters during DNA break repair. Nature 2014, 506:249-253.
-
(2014)
Nature
, vol.506
, pp. 249-253
-
-
Lesterlin, C.1
-
15
-
-
84940540419
-
Quantitative genomic analysis of RecA protein binding during DNA double-strand break repair reveals RecBCD action in vivo
-
Cockram C.A., et al. Quantitative genomic analysis of RecA protein binding during DNA double-strand break repair reveals RecBCD action in vivo. Proc. Natl. Acad. Sci. U.S.A. 2015, 112:E4735-E4742.
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. E4735-E4742
-
-
Cockram, C.A.1
-
16
-
-
84928473578
-
CRISPR adaptation biases explain preference for acquisition of foreign DNA
-
Levy A., et al. CRISPR adaptation biases explain preference for acquisition of foreign DNA. Nature 2015, 520:505-510.
-
(2015)
Nature
, vol.520
, pp. 505-510
-
-
Levy, A.1
-
17
-
-
0030737725
-
Stable DNA replication: interplay between DNA replication, homologous recombination, and transcription
-
Kogoma T. Stable DNA replication: interplay between DNA replication, homologous recombination, and transcription. Microbiol. Mol. Biol. Rev. 1997, 61:212-238.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 212-238
-
-
Kogoma, T.1
-
18
-
-
84915746628
-
RecQ helicase and RecJ nuclease provide complementary functions to resect DNA for homologous recombination
-
Morimatsu K., Kowalczykowski S.C. RecQ helicase and RecJ nuclease provide complementary functions to resect DNA for homologous recombination. Proc. Natl. Acad. Sci. U.S.A. 2014, 111:E5133-E5142.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E5133-E5142
-
-
Morimatsu, K.1
Kowalczykowski, S.C.2
-
19
-
-
66149130735
-
Reconstitution of initial steps of dsDNA break repair by the RecF pathway of E. coli
-
Handa N., et al. Reconstitution of initial steps of dsDNA break repair by the RecF pathway of E. coli. Genes Dev. 2009, 23:1234-1245.
-
(2009)
Genes Dev.
, vol.23
, pp. 1234-1245
-
-
Handa, N.1
-
20
-
-
0028034452
-
Protein interactions in genetic recombination in Escherichia coli. Interactions involving RecO and RecR overcome the inhibition of RecA by single-stranded DNA-binding protein
-
Umezu K., Kolodner R.D. Protein interactions in genetic recombination in Escherichia coli. Interactions involving RecO and RecR overcome the inhibition of RecA by single-stranded DNA-binding protein. J. Biol. Chem. 1994, 269:30005-30013.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 30005-30013
-
-
Umezu, K.1
Kolodner, R.D.2
-
21
-
-
0038392868
-
RecFOR proteins load RecA protein onto gapped DNA to accelerate DNA strand exchange: a universal step of recombinational repair
-
Morimatsu K., Kowalczykowski S.C. RecFOR proteins load RecA protein onto gapped DNA to accelerate DNA strand exchange: a universal step of recombinational repair. Mol. Cell 2003, 11:1337-1347.
-
(2003)
Mol. Cell
, vol.11
, pp. 1337-1347
-
-
Morimatsu, K.1
Kowalczykowski, S.C.2
-
22
-
-
84867406977
-
RecFOR proteins target RecA protein to a DNA gap with either DNA or RNA at the 5' terminus: implication for repair of stalled replication forks
-
Morimatsu K., et al. RecFOR proteins target RecA protein to a DNA gap with either DNA or RNA at the 5' terminus: implication for repair of stalled replication forks. J. Biol. Chem. 2012, 287:35621-35630.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 35621-35630
-
-
Morimatsu, K.1
-
23
-
-
84949952959
-
Imaging and energetics of single SSB-ssDNA molecules reveal intramolecular condensation and insight into RecOR function
-
Bell J.C., et al. Imaging and energetics of single SSB-ssDNA molecules reveal intramolecular condensation and insight into RecOR function. eLife 2015, 4:e08646.
-
(2015)
eLife
, vol.4
, pp. e08646
-
-
Bell, J.C.1
-
24
-
-
84868615392
-
Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA
-
Bell J.C., et al. Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA. Nature 2012, 491:274-278.
-
(2012)
Nature
, vol.491
, pp. 274-278
-
-
Bell, J.C.1
-
25
-
-
0000880652
-
Isolation and characterization of recombination-deficient mutants of Escherichia coli K12
-
Clark A.J., Margulies A.D. Isolation and characterization of recombination-deficient mutants of Escherichia coli K12. Proc. Natl. Acad. Sci. U.S.A. 1965, 53:451-459.
-
(1965)
Proc. Natl. Acad. Sci. U.S.A.
, vol.53
, pp. 451-459
-
-
Clark, A.J.1
Margulies, A.D.2
-
26
-
-
0028102267
-
Biochemistry of homologous recombination in Escherichia coli
-
Kowalczykowski S.C., et al. Biochemistry of homologous recombination in Escherichia coli. Microbiol. Rev. 1994, 58:401-465.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 401-465
-
-
Kowalczykowski, S.C.1
-
27
-
-
0017132755
-
Identification and radiochemical purification of the recA protein of Escherichia coli K-12
-
McEntee K., et al. Identification and radiochemical purification of the recA protein of Escherichia coli K-12. Proc. Natl. Acad. Sci. U.S.A. 1976, 73:3979-3983.
-
(1976)
Proc. Natl. Acad. Sci. U.S.A.
, vol.73
, pp. 3979-3983
-
-
McEntee, K.1
-
28
-
-
0032715175
-
Recombinational repair of DNA damage in Escherichia coli and bacteriophage λ
-
Kuzminov A. Recombinational repair of DNA damage in Escherichia coli and bacteriophage λ. Microbiol. Mol. Biol. Rev. 1999, 63:751-813.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 751-813
-
-
Kuzminov, A.1
-
29
-
-
0025891414
-
Biochemistry of genetic recombination: energetics and mechanism of DNA strand exchange
-
Kowalczykowski S.C. Biochemistry of genetic recombination: energetics and mechanism of DNA strand exchange. Annu. Rev. Biophys. Biophys. Chem. 1991, 20:539-575.
-
(1991)
Annu. Rev. Biophys. Biophys. Chem.
, vol.20
, pp. 539-575
-
-
Kowalczykowski, S.C.1
-
30
-
-
44349162159
-
Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures
-
Chen Z., et al. Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature 2008, 453:489-494.
-
(2008)
Nature
, vol.453
, pp. 489-494
-
-
Chen, Z.1
-
31
-
-
0025166577
-
Stable DNA heteroduplex formation catalyzed by the Escherichia coli RecA protein in the absence of ATP hydrolysis
-
Menetski J.P., et al. Stable DNA heteroduplex formation catalyzed by the Escherichia coli RecA protein in the absence of ATP hydrolysis. Proc. Natl. Acad. Sci. U.S.A. 1990, 87:21-25.
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 21-25
-
-
Menetski, J.P.1
-
32
-
-
0026500416
-
The structure of the E. coli recA protein monomer and polymer
-
Story R.M., et al. The structure of the E. coli recA protein monomer and polymer. Nature 1992, 355:318-325.
-
(1992)
Nature
, vol.355
, pp. 318-325
-
-
Story, R.M.1
-
33
-
-
0024339718
-
The location of DNA in RecA-DNA helical filaments
-
Egelman E.H., Yu X. The location of DNA in RecA-DNA helical filaments. Science 1989, 245:404-407.
-
(1989)
Science
, vol.245
, pp. 404-407
-
-
Egelman, E.H.1
Yu, X.2
-
34
-
-
0022653980
-
Structure and dynamics of recA protein-DNA complexes as determined by image analysis of electron micrographs
-
Stasiak A., Egelman E.H. Structure and dynamics of recA protein-DNA complexes as determined by image analysis of electron micrographs. Biophys. J. 1986, 49:5-7.
-
(1986)
Biophys. J.
, vol.49
, pp. 5-7
-
-
Stasiak, A.1
Egelman, E.H.2
-
35
-
-
0021646246
-
Visualization of SSB-ssDNA complexes active in the assembly of stable RecA-DNA filaments
-
Griffith J.D., et al. Visualization of SSB-ssDNA complexes active in the assembly of stable RecA-DNA filaments. Cold Spring Harb. Symp. Quant. Biol. 1984, 49:553-559.
-
(1984)
Cold Spring Harb. Symp. Quant. Biol.
, vol.49
, pp. 553-559
-
-
Griffith, J.D.1
-
36
-
-
0023135142
-
Effects of Escherichia coli SSB protein on the single-stranded DNA-dependent ATPase activity of Escherichia coli RecA protein. Evidence that SSB protein facilitates the binding of RecA protein to regions of secondary structure within single-stranded DNA
-
Kowalczykowski S.C., Krupp R.A. Effects of Escherichia coli SSB protein on the single-stranded DNA-dependent ATPase activity of Escherichia coli RecA protein. Evidence that SSB protein facilitates the binding of RecA protein to regions of secondary structure within single-stranded DNA. J. Mol. Biol. 1987, 193:97-113.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 97-113
-
-
Kowalczykowski, S.C.1
Krupp, R.A.2
-
37
-
-
0033887437
-
Structure of the DNA binding domain of E. coli SSB bound to ssDNA
-
Raghunathan S., et al. Structure of the DNA binding domain of E. coli SSB bound to ssDNA. Nat. Struct. Biol. 2000, 7:648-652.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 648-652
-
-
Raghunathan, S.1
-
38
-
-
0023008741
-
Structure of helical RecA-DNA complexes. Complexes formed in the presence of ATP-gamma-S or ATP
-
Egelman E.H., Stasiak A. Structure of helical RecA-DNA complexes. Complexes formed in the presence of ATP-gamma-S or ATP. J. Mol. Biol. 1986, 191:677-697.
-
(1986)
J. Mol. Biol.
, vol.191
, pp. 677-697
-
-
Egelman, E.H.1
Stasiak, A.2
-
39
-
-
0024843435
-
Visualization of RecA protein and its complexes with DNA by quick-freeze/deep-etch electron microscopy
-
Heuser J., Griffith J. Visualization of RecA protein and its complexes with DNA by quick-freeze/deep-etch electron microscopy. J. Mol. Biol. 1989, 210:473-484.
-
(1989)
J. Mol. Biol.
, vol.210
, pp. 473-484
-
-
Heuser, J.1
Griffith, J.2
-
40
-
-
0024344179
-
Biochemical events essential to the recombination activity of Escherichia coli RecA protein. I. Properties of the mutant RecA142 protein
-
Kowalczykowski S.C., et al. Biochemical events essential to the recombination activity of Escherichia coli RecA protein. I. Properties of the mutant RecA142 protein. J. Mol. Biol. 1989, 207:719-733.
-
(1989)
J. Mol. Biol.
, vol.207
, pp. 719-733
-
-
Kowalczykowski, S.C.1
-
41
-
-
0025848721
-
Biochemical and biological function of Escherichia coli RecA protein: behavior of mutant RecA proteins
-
Kowalczykowski S.C. Biochemical and biological function of Escherichia coli RecA protein: behavior of mutant RecA proteins. Biochimie 1991, 73:289-304.
-
(1991)
Biochimie
, vol.73
, pp. 289-304
-
-
Kowalczykowski, S.C.1
-
42
-
-
0032514675
-
RecA binding to a single double-stranded DNA molecule: a possible role of DNA conformational fluctuations
-
Léger J.F., et al. RecA binding to a single double-stranded DNA molecule: a possible role of DNA conformational fluctuations. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:12295-12299.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 12295-12299
-
-
Léger, J.F.1
-
43
-
-
0033529216
-
RecA polymerization on double-stranded DNA by using single-molecule manipulation: the role of ATP hydrolysis
-
Shivashankar G.V., et al. RecA polymerization on double-stranded DNA by using single-molecule manipulation: the role of ATP hydrolysis. Proc. Natl. Acad. Sci. U.S.A. 1999, 96:7916-7921.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 7916-7921
-
-
Shivashankar, G.V.1
-
44
-
-
0033621088
-
Polymerization and mechanical properties of single RecA-DNA filaments
-
Hegner M., et al. Polymerization and mechanical properties of single RecA-DNA filaments. Proc. Natl. Acad. Sci. U.S.A. 1999, 96:10109-10114.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 10109-10114
-
-
Hegner, M.1
-
45
-
-
33746713745
-
Real-time observation of RecA filament dynamics with single monomer resolution
-
Joo C., et al. Real-time observation of RecA filament dynamics with single monomer resolution. Cell 2006, 126:515-527.
-
(2006)
Cell
, vol.126
, pp. 515-527
-
-
Joo, C.1
-
46
-
-
33750296934
-
Direct observation of individual RecA filaments assembling on single DNA molecules
-
Galletto R., et al. Direct observation of individual RecA filaments assembling on single DNA molecules. Nature 2006, 443:875-878.
-
(2006)
Nature
, vol.443
, pp. 875-878
-
-
Galletto, R.1
-
47
-
-
77957023630
-
Watching individual proteins acting on single molecules of DNA
-
Amitani I., et al. Watching individual proteins acting on single molecules of DNA. Methods Enzymol. 2010, 472:261-291.
-
(2010)
Methods Enzymol.
, vol.472
, pp. 261-291
-
-
Amitani, I.1
-
48
-
-
67650567353
-
Single molecule analysis of a red fluorescent RecA protein reveals a defect in nucleoprotein filament nucleation that relates to its reduced biological functions
-
Handa N., et al. Single molecule analysis of a red fluorescent RecA protein reveals a defect in nucleoprotein filament nucleation that relates to its reduced biological functions. J. Biol. Chem. 2009, 284:18664-18673.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 18664-18673
-
-
Handa, N.1
-
49
-
-
77956311483
-
Osmolytes contribute to pH homeostasis of Escherichia coli
-
Kitko R.D., et al. Osmolytes contribute to pH homeostasis of Escherichia coli. PLoS ONE 2010, 5:e10078.
-
(2010)
PLoS ONE
, vol.5
, pp. e10078
-
-
Kitko, R.D.1
-
50
-
-
34547634728
-
PH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetry
-
Wilks J.C., Slonczewski J.L. pH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetry. J. Bacteriol. 2007, 189:5601-5607.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 5601-5607
-
-
Wilks, J.C.1
Slonczewski, J.L.2
-
51
-
-
0019456997
-
Change in intracellular pH of Escherichia coli mediates the chemotactic response to certain attractants and repellents
-
Repaske D.R., Adler J. Change in intracellular pH of Escherichia coli mediates the chemotactic response to certain attractants and repellents. J. Bacteriol. 1981, 145:1196-1208.
-
(1981)
J. Bacteriol.
, vol.145
, pp. 1196-1208
-
-
Repaske, D.R.1
Adler, J.2
-
52
-
-
0028363850
-
Control of the LexA regulon by pH: evidence for a reversible inactivation of the LexA repressor during the growth cycle of Escherichia coli
-
Dri A.M., Moreau P.L. Control of the LexA regulon by pH: evidence for a reversible inactivation of the LexA repressor during the growth cycle of Escherichia coli. Mol. Microbiol. 1994, 12:621-629.
-
(1994)
Mol. Microbiol.
, vol.12
, pp. 621-629
-
-
Dri, A.M.1
Moreau, P.L.2
-
53
-
-
0032822925
-
Enhanced monomer-monomer interactions can suppress the recombination deficiency of the recA142 allele
-
Zaitsev E.N., Kowalczykowski S.C. Enhanced monomer-monomer interactions can suppress the recombination deficiency of the recA142 allele. Mol. Microbiol. 1999, 34:1-9.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 1-9
-
-
Zaitsev, E.N.1
Kowalczykowski, S.C.2
-
54
-
-
11144263144
-
PH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12
-
Maurer L.M., et al. pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J. Bacteriol. 2005, 187:304-319.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 304-319
-
-
Maurer, L.M.1
-
55
-
-
84921930869
-
Dynamic growth and shrinkage govern the pH dependence of RecA filament stability
-
Kim S.H., et al. Dynamic growth and shrinkage govern the pH dependence of RecA filament stability. PLoS ONE 2015, 10:e0115611.
-
(2015)
PLoS ONE
, vol.10
, pp. e0115611
-
-
Kim, S.H.1
-
56
-
-
0024378045
-
Enhancement of Escherichia coli recA protein enzymatic function by dATP
-
Menetski J.P., Kowalczykowski S.C. Enhancement of Escherichia coli recA protein enzymatic function by dATP. Biochemistry 1989, 28:5871-5881.
-
(1989)
Biochemistry
, vol.28
, pp. 5871-5881
-
-
Menetski, J.P.1
Kowalczykowski, S.C.2
-
57
-
-
0022518308
-
ATP hydrolysis during SOS induction in Escherichia coli
-
Barbe J., et al. ATP hydrolysis during SOS induction in Escherichia coli. J. Bacteriol. 1986, 167:1055-1057.
-
(1986)
J. Bacteriol.
, vol.167
, pp. 1055-1057
-
-
Barbe, J.1
-
58
-
-
84860517399
-
Increased chromosome mobility facilitates homology search during recombination
-
Miné-Hattab J., Rothstein R. Increased chromosome mobility facilitates homology search during recombination. Nat. Cell Biol. 2012, 14:510-517.
-
(2012)
Nat. Cell Biol.
, vol.14
, pp. 510-517
-
-
Miné-Hattab, J.1
Rothstein, R.2
-
59
-
-
84860500314
-
Increased mobility of double-strand breaks requires Mec1, Rad9 and the homologous recombination machinery
-
Dion V., et al. Increased mobility of double-strand breaks requires Mec1, Rad9 and the homologous recombination machinery. Nat. Cell Biol. 2012, 14:502-509.
-
(2012)
Nat. Cell Biol.
, vol.14
, pp. 502-509
-
-
Dion, V.1
-
60
-
-
0029762349
-
The specificity of the secondary DNA binding site of RecA protein defines its role in DNA strand exchange
-
Mazin A.V., Kowalczykowski S.C. The specificity of the secondary DNA binding site of RecA protein defines its role in DNA strand exchange. Proc. Natl. Acad. Sci. U.S.A. 1996, 93:10673-10678.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 10673-10678
-
-
Mazin, A.V.1
Kowalczykowski, S.C.2
-
61
-
-
0026740399
-
The synapsis event in the homologous pairing of DNAs: RecA recognizes and pairs less than one helical repeat of DNA
-
Hsieh P., et al. The synapsis event in the homologous pairing of DNAs: RecA recognizes and pairs less than one helical repeat of DNA. Proc. Natl. Acad. Sci. U.S.A. 1992, 89:6492-6496.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 6492-6496
-
-
Hsieh, P.1
-
62
-
-
0022646708
-
On the mechanism of pairing of single- and double-stranded DNA molecules by the recA and single-stranded DNA-binding proteins of Escherichia coli
-
Julin D.A., et al. On the mechanism of pairing of single- and double-stranded DNA molecules by the recA and single-stranded DNA-binding proteins of Escherichia coli. J. Biol. Chem. 1986, 261:1025-1030.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 1025-1030
-
-
Julin, D.A.1
-
63
-
-
0020823126
-
By searching processively RecA protein pairs DNA molecules that share a limited stretch of homology
-
Gonda D.K., Radding C.M. By searching processively RecA protein pairs DNA molecules that share a limited stretch of homology. Cell 1983, 34:647-654.
-
(1983)
Cell
, vol.34
, pp. 647-654
-
-
Gonda, D.K.1
Radding, C.M.2
-
64
-
-
0022881276
-
The mechanism of the search for homology promoted by recA protein. Facilitated diffusion within nucleoprotein networks
-
Gonda D.K., Radding C.M. The mechanism of the search for homology promoted by recA protein. Facilitated diffusion within nucleoprotein networks. J. Biol. Chem. 1986, 261:13087-13096.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 13087-13096
-
-
Gonda, D.K.1
Radding, C.M.2
-
65
-
-
0032553529
-
No sliding during homology search by RecA protein
-
Adzuma K. No sliding during homology search by RecA protein. J. Biol. Chem. 1998, 273:31565-31573.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 31565-31573
-
-
Adzuma, K.1
-
66
-
-
0002433423
-
How do genome-regulatory proteins locate their DNA target sites?
-
Berg O.G., et al. How do genome-regulatory proteins locate their DNA target sites?. Trends Biochem. Sci. 1982, 7:52-55.
-
(1982)
Trends Biochem. Sci.
, vol.7
, pp. 52-55
-
-
Berg, O.G.1
-
67
-
-
33748523075
-
Recognizing DNA
-
Lavery R. Recognizing DNA. Q. Rev. Biophys 2005, 38:339-344.
-
(2005)
Q. Rev. Biophys
, vol.38
, pp. 339-344
-
-
Lavery, R.1
-
68
-
-
0002304026
-
Some thermodynamic principles of nonspecific and site-specific protein-DNA interactions
-
CRC Press, A. Revzin (Ed.)
-
Record M.T.J., Spolar R.S. Some thermodynamic principles of nonspecific and site-specific protein-DNA interactions. In The Biology of Nonspecific DNA Protein Interactions 1990, 33-69. CRC Press. A. Revzin (Ed.).
-
(1990)
In The Biology of Nonspecific DNA Protein Interactions
, pp. 33-69
-
-
Record, M.T.J.1
Spolar, R.S.2
-
69
-
-
0025330003
-
Lambda repressor: a model system for understanding protein-DNA interactions and protein stability
-
Sauer R.T., et al. Lambda repressor: a model system for understanding protein-DNA interactions and protein stability. Adv. Protein Chem. 1990, 40:1-61.
-
(1990)
Adv. Protein Chem.
, vol.40
, pp. 1-61
-
-
Sauer, R.T.1
-
70
-
-
0004237841
-
The role of nonspecific interactions for gene-regulatory proteins in their search for specific target sites
-
CRC Press, A. Revzin (Ed.)
-
Berg O.G. The role of nonspecific interactions for gene-regulatory proteins in their search for specific target sites. In The Biology of Nonspecific DNA Protein Interactions 1990, 71-85. CRC Press. A. Revzin (Ed.).
-
(1990)
In The Biology of Nonspecific DNA Protein Interactions
, pp. 71-85
-
-
Berg, O.G.1
-
71
-
-
0024531901
-
Facilitated target location in biological systems
-
von Hippel P.H., Berg O.G. Facilitated target location in biological systems. J. Biol. Chem. 1989, 264:675-678.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 675-678
-
-
von Hippel, P.H.1
Berg, O.G.2
-
72
-
-
0019887628
-
Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory
-
Berg O.G., et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. Biochemistry 1981, 20:6929-6948.
-
(1981)
Biochemistry
, vol.20
, pp. 6929-6948
-
-
Berg, O.G.1
-
73
-
-
0019867850
-
Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor-operator interaction: kinetic measurements and conclusions
-
Winter R.B., et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor-operator interaction: kinetic measurements and conclusions. Biochemistry 1981, 20:6961-6977.
-
(1981)
Biochemistry
, vol.20
, pp. 6961-6977
-
-
Winter, R.B.1
-
74
-
-
0019816896
-
Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli repressor-operator interaction: equilibrium measurements
-
Winter R.B., von Hippel P.H. Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli repressor-operator interaction: equilibrium measurements. Biochemistry 1981, 20:6948-6960.
-
(1981)
Biochemistry
, vol.20
, pp. 6948-6960
-
-
Winter, R.B.1
von Hippel, P.H.2
-
76
-
-
84871006430
-
Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions
-
Hadizadeh Yazdi N., et al. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Mol. Microbiol. 2012, 86:1318-1333.
-
(2012)
Mol. Microbiol.
, vol.86
, pp. 1318-1333
-
-
Hadizadeh Yazdi, N.1
-
78
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E., et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 2009, 326:289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
79
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets?
-
Halford S.E., Marko J.F. How do site-specific DNA-binding proteins find their targets?. Nucleic Acids Res. 2004, 32:3040-3052.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
80
-
-
0030024985
-
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules
-
Smith S.B., et al. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science 1996, 271:795-799.
-
(1996)
Science
, vol.271
, pp. 795-799
-
-
Smith, S.B.1
-
81
-
-
0030947539
-
Ionic effects on the elasticity of single DNA molecules
-
Baumann C.G., et al. Ionic effects on the elasticity of single DNA molecules. Proc. Natl. Acad. Sci. U.S.A. 1997, 94:6185-6190.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 6185-6190
-
-
Baumann, C.G.1
-
82
-
-
1942423138
-
Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy
-
Murphy M.C., et al. Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy. Biophys. J. 2004, 86:2530-2537.
-
(2004)
Biophys. J.
, vol.86
, pp. 2530-2537
-
-
Murphy, M.C.1
-
83
-
-
61349185799
-
Nonlinear low-force elasticity of single-stranded DNA molecules
-
Saleh O.A., et al. Nonlinear low-force elasticity of single-stranded DNA molecules. Phys. Rev. Lett. 2009, 102:068301.
-
(2009)
Phys. Rev. Lett.
, vol.102
, pp. 068301
-
-
Saleh, O.A.1
-
84
-
-
0346660225
-
Initiation of general recombination catalyzed in vitro by the recA protein of Escherichia coli
-
McEntee K., et al. Initiation of general recombination catalyzed in vitro by the recA protein of Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 1979, 76:2615-2619.
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, pp. 2615-2619
-
-
McEntee, K.1
-
85
-
-
0000133316
-
Purified Escherichia coli recA protein catalyzes homologous pairing of superhelical DNA and single-stranded fragments
-
Shibata T., et al. Purified Escherichia coli recA protein catalyzes homologous pairing of superhelical DNA and single-stranded fragments. Proc. Natl. Acad. Sci. U.S.A. 1979, 76:1638-1642.
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, pp. 1638-1642
-
-
Shibata, T.1
-
86
-
-
84857118715
-
Single-molecule imaging of DNA pairing by RecA reveals a three-dimensional homology search
-
Forget A.L., Kowalczykowski S.C. Single-molecule imaging of DNA pairing by RecA reveals a three-dimensional homology search. Nature 2012, 482:423-427.
-
(2012)
Nature
, vol.482
, pp. 423-427
-
-
Forget, A.L.1
Kowalczykowski, S.C.2
-
87
-
-
84875192701
-
Exploring protein-DNA interactions in 3D using in situ construction, manipulation and visualization of individual DNA dumbbells with optical traps, microfluidics and fluorescence microscopy
-
Forget A.L., et al. Exploring protein-DNA interactions in 3D using in situ construction, manipulation and visualization of individual DNA dumbbells with optical traps, microfluidics and fluorescence microscopy. Nat. Protoc. 2013, 8:525-538.
-
(2013)
Nat. Protoc.
, vol.8
, pp. 525-538
-
-
Forget, A.L.1
-
88
-
-
80051527439
-
Real-time observation of strand exchange reaction with high spatiotemporal resolution
-
Ragunathan K., et al. Real-time observation of strand exchange reaction with high spatiotemporal resolution. Structure 2011, 19:1064-1073.
-
(2011)
Structure
, vol.19
, pp. 1064-1073
-
-
Ragunathan, K.1
-
89
-
-
84881494657
-
RecA filament sliding on DNA facilitates homology search
-
Ragunathan K., et al. RecA filament sliding on DNA facilitates homology search. eLife 2012, 1:e00067.
-
(2012)
eLife
, vol.1
, pp. e00067
-
-
Ragunathan, K.1
-
90
-
-
84861978524
-
Mechanism of homology recognition in DNA recombination from dual-molecule experiments
-
De Vlaminck I., et al. Mechanism of homology recognition in DNA recombination from dual-molecule experiments. Mol. Cell 2012, 46:616-624.
-
(2012)
Mol. Cell
, vol.46
, pp. 616-624
-
-
De Vlaminck, I.1
-
91
-
-
84948582953
-
Integrating multi-scale data on homologous recombination into a new recognition mechanism based on simulations of the RecA-ssDNA/dsDNA structure
-
Yang D., et al. Integrating multi-scale data on homologous recombination into a new recognition mechanism based on simulations of the RecA-ssDNA/dsDNA structure. Nucleic Acids Res. 2015, 43:10251-10263.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 10251-10263
-
-
Yang, D.1
-
92
-
-
84948582204
-
Structure/function relationships in RecA protein-mediated homology recognition and strand exchange
-
Prentiss M., et al. Structure/function relationships in RecA protein-mediated homology recognition and strand exchange. Crit. Rev. Biochem. Mol. Biol. 2015, 50:453-476.
-
(2015)
Crit. Rev. Biochem. Mol. Biol.
, vol.50
, pp. 453-476
-
-
Prentiss, M.1
-
93
-
-
84939611075
-
RecA-mediated sequence homology recognition as an example of how searching speed in self-assembly systems can be optimized by balancing entropic and enthalpic barriers
-
Jiang L., Prentiss M. RecA-mediated sequence homology recognition as an example of how searching speed in self-assembly systems can be optimized by balancing entropic and enthalpic barriers. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 2014, 90:022704.
-
(2014)
Phys. Rev. E Stat. Nonlin. Soft Matter Phys.
, vol.90
, pp. 022704
-
-
Jiang, L.1
Prentiss, M.2
-
94
-
-
84923369935
-
DNA sequence alignment by microhomology sampling during homologous recombination
-
Qi Z., et al. DNA sequence alignment by microhomology sampling during homologous recombination. Cell 2015, 160:856-869.
-
(2015)
Cell
, vol.160
, pp. 856-869
-
-
Qi, Z.1
-
95
-
-
84940553739
-
DNA recombination. Base triplet stepping by the Rad51/RecA family of recombinases
-
Lee J.Y., et al. DNA recombination. Base triplet stepping by the Rad51/RecA family of recombinases. Science 2015, 349:977-981.
-
(2015)
Science
, vol.349
, pp. 977-981
-
-
Lee, J.Y.1
-
96
-
-
84886751857
-
DNA in motion during double-strand break repair
-
Miné-Hattab J., Rothstein R. DNA in motion during double-strand break repair. Trends Cell Biol. 2013, 23:529-536.
-
(2013)
Trends Cell Biol.
, vol.23
, pp. 529-536
-
-
Miné-Hattab, J.1
Rothstein, R.2
-
97
-
-
84907482360
-
Interchromosomal homology searches drive directional ALT telomere movement and synapsis
-
Cho N.W., et al. Interchromosomal homology searches drive directional ALT telomere movement and synapsis. Cell 2014, 159:108-121.
-
(2014)
Cell
, vol.159
, pp. 108-121
-
-
Cho, N.W.1
-
98
-
-
84887064569
-
Cohesin and the nucleolus constrain the mobility of spontaneous repair foci
-
Dion V., et al. Cohesin and the nucleolus constrain the mobility of spontaneous repair foci. EMBO Rep. 2013, 14:984-991.
-
(2013)
EMBO Rep.
, vol.14
, pp. 984-991
-
-
Dion, V.1
-
99
-
-
84875207723
-
Chromatin movement in the maintenance of genome stability
-
Dion V., Gasser S.M. Chromatin movement in the maintenance of genome stability. Cell 2013, 152:1355-1364.
-
(2013)
Cell
, vol.152
, pp. 1355-1364
-
-
Dion, V.1
Gasser, S.M.2
-
100
-
-
84954477354
-
Chromosome position determines the success of double-strand break repair
-
Lee C.S., et al. Chromosome position determines the success of double-strand break repair. Proc. Natl. Acad. Sci. U.S.A. 2016, 113:E146-E154.
-
(2016)
Proc. Natl. Acad. Sci. U.S.A.
, vol.113
, pp. E146-E154
-
-
Lee, C.S.1
-
102
-
-
84959188383
-
DNA damage signalling targets the kinetochore to promote chromatin mobility
-
Strecker J., et al. DNA damage signalling targets the kinetochore to promote chromatin mobility. Nat. Cell Biol. 2016, 18:281-290.
-
(2016)
Nat. Cell Biol.
, vol.18
, pp. 281-290
-
-
Strecker, J.1
-
103
-
-
0022888115
-
Determination of bacterial cell volume with the Coulter Counter
-
Kubitschek H.E., Friske J.A. Determination of bacterial cell volume with the Coulter Counter. J. Bacteriol. 1986, 168:1466-1467.
-
(1986)
J. Bacteriol.
, vol.168
, pp. 1466-1467
-
-
Kubitschek, H.E.1
Friske, J.A.2
-
104
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner F.R., et al. The complete genome sequence of Escherichia coli K-12. Science 1997, 277:1453-1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
-
105
-
-
77951537332
-
Stoichiometry and architecture of active DNA replication machinery in Escherichia coli
-
Reyes-Lamothe R., et al. Stoichiometry and architecture of active DNA replication machinery in Escherichia coli. Science 2010, 328:498-501.
-
(2010)
Science
, vol.328
, pp. 498-501
-
-
Reyes-Lamothe, R.1
-
107
-
-
0014982055
-
Usefulness of benzoylated naphthoylated DEAE-cellulose to distinguish and fractionate double-stranded DNA bearing different extents of single-stranded regions
-
Iyer V.N., Rupp W.D. Usefulness of benzoylated naphthoylated DEAE-cellulose to distinguish and fractionate double-stranded DNA bearing different extents of single-stranded regions. Biochim. Biophys. Acta 1971, 228:117-126.
-
(1971)
Biochim. Biophys. Acta
, vol.228
, pp. 117-126
-
-
Iyer, V.N.1
Rupp, W.D.2
-
108
-
-
0026664596
-
Similar-sized daughter-strand gaps are produced in the leading and lagging strands of DNA in UV-irradiated E. coli uvrA cells
-
Wang T.C., Chen S.H. Similar-sized daughter-strand gaps are produced in the leading and lagging strands of DNA in UV-irradiated E. coli uvrA cells. Biochem. Biophys. Res. Commun. 1992, 184:1496-1503.
-
(1992)
Biochem. Biophys. Res. Commun.
, vol.184
, pp. 1496-1503
-
-
Wang, T.C.1
Chen, S.H.2
-
109
-
-
34249789279
-
Spontaneous DNA breakage in single living Escherichia coli cells
-
Pennington J.M., Rosenberg S.M. Spontaneous DNA breakage in single living Escherichia coli cells. Nat. Genet. 2007, 39:797-802.
-
(2007)
Nat. Genet.
, vol.39
, pp. 797-802
-
-
Pennington, J.M.1
Rosenberg, S.M.2
-
110
-
-
0017697662
-
Repair of DNA double-strand breaks in Escherichia coli, which requires recA function and the presence of a duplicate genome
-
Krasin F., Hutchinson F. Repair of DNA double-strand breaks in Escherichia coli, which requires recA function and the presence of a duplicate genome. J. Mol. Biol. 1977, 116:81-98.
-
(1977)
J. Mol. Biol.
, vol.116
, pp. 81-98
-
-
Krasin, F.1
Hutchinson, F.2
-
111
-
-
0018077269
-
Repair of cross-linked DNA and survival of Escherichia coli treated with psoralen and light: effects of mutations influencing genetic recombination and DNA metabolism
-
Sinden R.R., Cole R.S. Repair of cross-linked DNA and survival of Escherichia coli treated with psoralen and light: effects of mutations influencing genetic recombination and DNA metabolism. J. Bacteriol. 1978, 136:538-547.
-
(1978)
J. Bacteriol.
, vol.136
, pp. 538-547
-
-
Sinden, R.R.1
Cole, R.S.2
-
112
-
-
0028246888
-
Escherichia coli single-stranded DNA-binding protein: multiple DNA-binding modes and cooperativities
-
Lohman T.M., Ferrari M.E. Escherichia coli single-stranded DNA-binding protein: multiple DNA-binding modes and cooperativities. Annu. Rev. Biochem. 1994, 63:527-570.
-
(1994)
Annu. Rev. Biochem.
, vol.63
, pp. 527-570
-
-
Lohman, T.M.1
Ferrari, M.E.2
-
113
-
-
0022971443
-
Interaction of recA protein with a photoaffinity analogue of ATP, 8-azido-ATP: determination of nucleotide cofactor binding parameters and of the relationship between ATP binding and ATP hydrolysis
-
Kowalczykowski S.C. Interaction of recA protein with a photoaffinity analogue of ATP, 8-azido-ATP: determination of nucleotide cofactor binding parameters and of the relationship between ATP binding and ATP hydrolysis. Biochemistry 1986, 25:5872-5881.
-
(1986)
Biochemistry
, vol.25
, pp. 5872-5881
-
-
Kowalczykowski, S.C.1
-
114
-
-
0019839856
-
Hydrolysis of nucleoside triphosphates catalyzed by the recA protein of Escherichia coli. Steady state kinetic analysis of ATP hydrolysis
-
Weinstock G.M., et al. Hydrolysis of nucleoside triphosphates catalyzed by the recA protein of Escherichia coli. Steady state kinetic analysis of ATP hydrolysis. J. Biol. Chem. 1981, 256:8845-8849.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 8845-8849
-
-
Weinstock, G.M.1
-
115
-
-
0022429092
-
Interaction of recA protein with single-stranded DNA. Quantitative aspects of binding affinity modulation by nucleotide cofactors
-
Menetski J.P., Kowalczykowski S.C. Interaction of recA protein with single-stranded DNA. Quantitative aspects of binding affinity modulation by nucleotide cofactors. J. Mol. Biol. 1985, 181:281-295.
-
(1985)
J. Mol. Biol.
, vol.181
, pp. 281-295
-
-
Menetski, J.P.1
Kowalczykowski, S.C.2
-
116
-
-
0032518216
-
Binding of double-stranded DNA by Escherichia coli RecA protein monitored by a fluorescent dye displacement assay
-
Zaitsev E.N., Kowalczykowski S.C. Binding of double-stranded DNA by Escherichia coli RecA protein monitored by a fluorescent dye displacement assay. Nucleic Acids Res. 1998, 26:650-654.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 650-654
-
-
Zaitsev, E.N.1
Kowalczykowski, S.C.2
-
117
-
-
0003968406
-
-
Constable & Company Ltd
-
Perrin J. Les Atomes 1916, Constable & Company Ltd.
-
(1916)
Les Atomes
-
-
Perrin, J.1
-
118
-
-
84857166722
-
Targeted INO80 enhances subnuclear chromatin movement and ectopic homologous recombination
-
Neumann F.R., et al. Targeted INO80 enhances subnuclear chromatin movement and ectopic homologous recombination. Genes Dev. 2012, 26:369-383.
-
(2012)
Genes Dev.
, vol.26
, pp. 369-383
-
-
Neumann, F.R.1
|