-
1
-
-
0015172208
-
The conformation of single-strand polynucleotides in solution: Sedimentation studies of apurinic acid
-
Achter, E. K., and G. Felsenfeld. 1971. The conformation of single-strand polynucleotides in solution: sedimentation studies of apurinic acid. Biopolymers. 10:1625-1634.
-
(1971)
Biopolymers
, vol.10
, pp. 1625-1634
-
-
Achter, E.K.1
Felsenfeld, G.2
-
2
-
-
0031030449
-
Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA
-
Bochkarev, A., R. A. Pfuetzner, A. M. Edwards, and L. Frappier. 1997. Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA. Nature. 385:176-181.
-
(1997)
Nature
, vol.385
, pp. 176-181
-
-
Bochkarev, A.1
Pfuetzner, R.A.2
Edwards, A.M.3
Frappier, L.4
-
3
-
-
0037186549
-
Structure and dynamics of KH domains from FBP bound to single-stranded DNA
-
Braddock, D. T., J. M. Louis, J. L. Baber, D. Levens, and G. M. Clore. 2002. Structure and dynamics of KH domains from FBP bound to single-stranded DNA. Nature. 415:1051-1056.
-
(2002)
Nature
, vol.415
, pp. 1051-1056
-
-
Braddock, D.T.1
Louis, J.M.2
Baber, J.L.3
Levens, D.4
Clore, G.M.5
-
4
-
-
20644431583
-
Single-molecule fluorescence resonant energy transfer in calcium concentration dependent cameleon
-
Brasselet, S., E. J. G. Peterman, A. Miyawaki, and W. E. Moerner. 2000. Single-molecule fluorescence resonant energy transfer in calcium concentration dependent cameleon. J. Phys. Chem. B. 104:3676-3682.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 3676-3682
-
-
Brasselet, S.1
Peterman, E.J.G.2
Miyawaki, A.3
Moerner, W.E.4
-
5
-
-
0028071373
-
Entropic elasticity of lambda-phage DNA
-
Bustamante, C., J. F. Marko, E. D. Siggia, and S. Smith. 1994. Entropic elasticity of lambda-phage DNA. Science. 265:1599-1600.
-
(1994)
Science
, vol.265
, pp. 1599-1600
-
-
Bustamante, C.1
Marko, J.F.2
Siggia, E.D.3
Smith, S.4
-
6
-
-
0035816217
-
E. Coli Rep oligomers are required to initiate DNA unwinding in vitro
-
Cheng, W., J. Hsieh, K. M. Brendza, and T. M. Lohman. 2001. E. Coli Rep oligomers are required to initiate DNA unwinding in vitro. J. Mol. Biol. 310:327-350.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 327-350
-
-
Cheng, W.1
Hsieh, J.2
Brendza, K.M.3
Lohman, T.M.4
-
7
-
-
0026687952
-
Fluorescence resonance energy transfer and nucleic acids
-
Clegg, R. M. 1992. Fluorescence resonance energy transfer and nucleic acids. Methods Enzymol. 211:353-388.
-
(1992)
Methods Enzymol.
, vol.211
, pp. 353-388
-
-
Clegg, R.M.1
-
8
-
-
0033616580
-
Single-pair fluorescence resonance energy transfer on freely diffusing molecules: Observation of Förster distance dependence and subpopulations
-
Deniz, A. A., M. Dahan, J. R. Grunwell, T. J. Ha, A. E. Faulhaber, D. S. Chemla, S. Weiss, and P. G. Schultz. 1999. Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Förster distance dependence and subpopulations. Proc. Natl. Acad. Sci. USA. 96:3670-3675.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3670-3675
-
-
Deniz, A.A.1
Dahan, M.2
Grunwell, J.R.3
Ha, T.J.4
Faulhaber, A.E.5
Chemla, D.S.6
Weiss, S.7
Schultz, P.G.8
-
9
-
-
0034625167
-
Single-molecule protein folding: Diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2
-
Deniz, A. A., T. A. Laurence, G. S. Beligere, M. Dahan, A. B. Martin, D. S. Chemla, P. E. Dawson, P. G. Schultz, and S. Weiss. 2000. Single-molecule protein folding: diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2. Proc. Natl. Acad. Sci. USA. 97:5179-5184.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5179-5184
-
-
Deniz, A.A.1
Laurence, T.A.2
Beligere, G.S.3
Dahan, M.4
Martin, A.B.5
Chemla, D.S.6
Dawson, P.E.7
Schultz, P.G.8
Weiss, S.9
-
10
-
-
0034743156
-
Ratiometric single-molecule studies of freely diffusing biomolecules
-
Review
-
Deniz, A. A., T. A. Laurence, M. Dahan, D. S. Chemla, P. G. Schultz, and S. Weiss. 2001. Ratiometric single-molecule studies of freely diffusing biomolecules. Annu. Rev. Phys. Chem. 52:233-253 [Review].
-
(2001)
Annu. Rev. Phys. Chem.
, vol.52
, pp. 233-253
-
-
Deniz, A.A.1
Laurence, T.A.2
Dahan, M.3
Chemla, D.S.4
Schultz, P.G.5
Weiss, S.6
-
11
-
-
18744407040
-
Stretching single stranded DNA, a model polyelectrolyte
-
Dessinges, M. N., B. Maier, Y. Zhang, M. Peliti, D. Bensimon, and V. Croquette. 2002. Stretching single stranded DNA, a model polyelectrolyte. Phys. Rev. Lett. 89:248102.
-
(2002)
Phys. Rev. Lett.
, vol.89
, pp. 248102
-
-
Dessinges, M.N.1
Maier, B.2
Zhang, Y.3
Peliti, M.4
Bensimon, D.5
Croquette, V.6
-
12
-
-
0014220127
-
Studies of the temperature-dependent conformation and phase separation of polyriboadenylic acid solutions at neutral pH
-
Eisenberg, H., and G. Felsenfeld. 1967. Studies of the temperature-dependent conformation and phase separation of polyriboadenylic acid solutions at neutral pH. J. Mol. Biol. 30:17-37.
-
(1967)
J. Mol. Biol.
, vol.30
, pp. 17-37
-
-
Eisenberg, H.1
Felsenfeld, G.2
-
14
-
-
0028945654
-
Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution
-
Funatsu, T., Y. Harada, M. Tokunaga, K. Saito, and T. Yanagida. 1995. Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution. Nature. 374: 555-559.
-
(1995)
Nature
, vol.374
, pp. 555-559
-
-
Funatsu, T.1
Harada, Y.2
Tokunaga, M.3
Saito, K.4
Yanagida, T.5
-
15
-
-
0029987587
-
Probing the interaction between two single molecules: Fluorescence resonance energy transfer between a single donor and a single acceptor
-
Ha, T., T. Enderle, D. F. Ogletree, D. S. Chemla, P. R. Selvin, and S. Weiss. 1996. Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor. Proc. Natl. Acad. Sci. USA. 93:6264-6268.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 6264-6268
-
-
Ha, T.1
Enderle, T.2
Ogletree, D.F.3
Chemla, D.S.4
Selvin, P.R.5
Weiss, S.6
-
16
-
-
0033514435
-
Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism
-
Ha, T. J., A. Y. Ting, J. Liang, W. B. Caldwell, A. A. Deniz, D. S. Chemla, P. G. Schultz, and S. Weiss. 1999. Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism. Proc. Natl. Acad. Sci. USA. 96:893-898.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 893-898
-
-
Ha, T.J.1
Ting, A.Y.2
Liang, J.3
Caldwell, W.B.4
Deniz, A.A.5
Chemla, D.S.6
Schultz, P.G.7
Weiss, S.8
-
18
-
-
0014945021
-
Conformation of polyribouridylic acid in solution
-
Inners, L. D., and G. Felsenfeld. 1970. Conformation of polyribouridylic acid in solution. J. Mol. Biol. 50:373-389.
-
(1970)
J. Mol. Biol.
, vol.50
, pp. 373-389
-
-
Inners, L.D.1
Felsenfeld, G.2
-
19
-
-
0032518490
-
Hepatitis C virus Ns3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding
-
Kim, J. L., K. A. Morgenstern, J. P. Griffith, M. D. Dwyer, J. A. Thomson, M. A. Murcko, C. Lin, and P. R. Caron. 1998. Hepatitis C virus Ns3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding. Structure. 6: 89-100.
-
(1998)
Structure
, vol.6
, pp. 89-100
-
-
Kim, J.L.1
Morgenstern, K.A.2
Griffith, J.P.3
Dwyer, M.D.4
Thomson, J.A.5
Murcko, M.A.6
Lin, C.7
Caron, P.R.8
-
20
-
-
0035997065
-
Probing protein-DNA interactions by unzipping a single DNA double helix
-
Koch, S. J., A. Shundrovsky, B. C. Jantzen, and M. D. Wang. 2002. Probing protein-DNA interactions by unzipping a single DNA double helix. Biophys. J. 83:1098-1105.
-
(2002)
Biophys. J.
, vol.83
, pp. 1098-1105
-
-
Koch, S.J.1
Shundrovsky, A.2
Jantzen, B.C.3
Wang, M.D.4
-
21
-
-
0030740262
-
Major domain swiveling revealed by the crystal structures of complexes of E-Coli Rep helicase bound to single-stranded DNA and ATP
-
Korolev, S., J. Hsieh, G. H. Gauss, T. M. Lohman, and G. Waksman. 1997. Major domain swiveling revealed by the crystal structures of complexes of E-Coli Rep helicase bound to single-stranded DNA and ATP. Cell. 90:635-647.
-
(1997)
Cell
, vol.90
, pp. 635-647
-
-
Korolev, S.1
Hsieh, J.2
Gauss, G.H.3
Lohman, T.M.4
Waksman, G.5
-
23
-
-
0034759469
-
A semiflexible polymer model applied to loop formation in DNA hairpins
-
Kuznetsov, S. V., Y. Q. Shen, A. S. Benight, and A. Ansari. 2001. A semiflexible polymer model applied to loop formation in DNA hairpins. Biophys. J. 81:2864-2875.
-
(2001)
Biophys. J.
, vol.81
, pp. 2864-2875
-
-
Kuznetsov, S.V.1
Shen, Y.Q.2
Benight, A.S.3
Ansari, A.4
-
25
-
-
0034710990
-
Replication by a single DNA polymerase of a stretched single-stranded DNA
-
Maier, B., D. Bensimon, and V. Croquette. 2000. Replication by a single DNA polymerase of a stretched single-stranded DNA. Proc. Natl. Acad. Sci. USA. 97:12002-12007.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12002-12007
-
-
Maier, B.1
Bensimon, D.2
Croquette, V.3
-
26
-
-
0037315675
-
Structural dynamics of individual Holliday junctions
-
McKinney, S. A., A. C. Declais, D. M. J. Lilley, and T. Ha. 2003. Structural dynamics of individual Holliday junctions. Nat. Struct. Biol. 10:93-97.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 93-97
-
-
McKinney, S.A.1
Declais, A.C.2
Lilley, D.M.J.3
Ha, T.4
-
27
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis, N., A. W. Rosenbluth, M. N. Rosenbluth, A. H. Teller, and E. Tell. 1953. Equation of state calculations by fast computing machines. J. Chem. Phys. 21:1087-1092.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Tell, E.5
-
28
-
-
0033534516
-
Flexibility of single-stranded DNA: Use of gapped duplex helices to determine the persistence lengths of poly(dT) and poly(dA)
-
Mills, J. B., E. Vacano, and P. J. Hagerman. 1999. Flexibility of single-stranded DNA: use of gapped duplex helices to determine the persistence lengths of poly(dT) and poly(dA). J. Mol. Biol. 285:245-257.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 245-257
-
-
Mills, J.B.1
Vacano, E.2
Hagerman, P.J.3
-
29
-
-
6644229670
-
Hairpin formation and elongation of biomolecules
-
Montanari, A., and M. Mezard. 2001. Hairpin formation and elongation of biomolecules. Phys. Rev. Lett. 86:2178-2181.
-
(2001)
Phys. Rev. Lett.
, vol.86
, pp. 2178-2181
-
-
Montanari, A.1
Mezard, M.2
-
30
-
-
0016502853
-
Configurational statistics of polynucleotide chains. A single virtual bond treatment
-
Olson, W. K. 1975. Configurational statistics of polynucleotide chains. A single virtual bond treatment. Macromolecules. 8:272-275.
-
(1975)
Macromolecules
, vol.8
, pp. 272-275
-
-
Olson, W.K.1
-
31
-
-
0033887437
-
Structure of the DNA binding domain of E. coli SSB bound to ssDNA
-
Raghunathan, S., A. G. Kozlov, T. M. Lohman, and G. Waksman. 2000. Structure of the DNA binding domain of E. coli SSB bound to ssDNA. Nat. Struct. Biol. 7:648-652.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 648-652
-
-
Raghunathan, S.1
Kozlov, A.G.2
Lohman, T.M.3
Waksman, G.4
-
32
-
-
0032479186
-
Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility
-
Rivetti, C., C. Walker, and C. Bustamante. 1998. Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility. J. Mol. Biol. 280:41-59.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 41-59
-
-
Rivetti, C.1
Walker, C.2
Bustamante, C.3
-
33
-
-
0037452580
-
Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:primer/template complexes
-
Rothwell, P. J., S. Berger, O. Kensch, S. Felekyan, M. Antonik, B. M. Wohrl, T. Restle, R. S. Goody, and C. A. Seidel. 2003. Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:primer/template complexes. Proc. Natl. Acad. Sci. USA. 100:1655-1660.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 1655-1660
-
-
Rothwell, P.J.1
Berger, S.2
Kensch, O.3
Felekyan, S.4
Antonik, M.5
Wohrl, B.M.6
Restle, T.7
Goody, R.S.8
Seidel, C.A.9
-
35
-
-
0037126290
-
Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy
-
Schuler, B., E. A. Lipman, and W. A. Eaton. 2002. Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy. Nature. 419:743-747.
-
(2002)
Nature
, vol.419
, pp. 743-747
-
-
Schuler, B.1
Lipman, E.A.2
Eaton, W.A.3
-
36
-
-
0033823060
-
The renaissance of fluorescence resonance energy transfer
-
Review
-
Selvin, P. R. 2000. The renaissance of fluorescence resonance energy transfer. Nat. Struct. Biol. 7:730-734 [Review].
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 730-734
-
-
Selvin, P.R.1
-
37
-
-
0030024985
-
Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
-
Smith, S. B., Y. J. Cui, and C. Bustamante. 1996. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science. 271:795-799.
-
(1996)
Science
, vol.271
, pp. 795-799
-
-
Smith, S.B.1
Cui, Y.J.2
Bustamante, C.3
-
39
-
-
0005491450
-
Statistical mechanics of semiflexible chains
-
A. Grosberg, editor. Academic Press, San Diego, CA
-
Thirumalai, D., and B. Y. Ha. 1998. Statistical mechanics of semiflexible chains. In Theoretical and Mathematical Models in Polymer Research. A. Grosberg, editor. Academic Press, San Diego, CA. 1-35.
-
(1998)
Theoretical and Mathematical Models in Polymer Research
, pp. 1-35
-
-
Thirumalai, D.1
Ha, B.Y.2
-
40
-
-
0031238076
-
Persistence length of single-stranded DNA
-
Tinland, B., A. Pluen, J. Sturm, and G. Weill. 1997. Persistence length of single-stranded DNA. Macromolecules. 30:5763-5765.
-
(1997)
Macromolecules
, vol.30
, pp. 5763-5765
-
-
Tinland, B.1
Pluen, A.2
Sturm, J.3
Weill, G.4
-
42
-
-
0034901419
-
Stretching single-stranded DNA: Interplay of electrostatic, basepairing, and basepair stacking interactions
-
Zhang, Y., H. Zhou, and Z. C. Ou-Yang. 2001. Stretching single-stranded DNA: interplay of electrostatic, basepairing, and basepair stacking interactions. Biophys. J. 81:1133-1143.
-
(2001)
Biophys. J.
, vol.81
, pp. 1133-1143
-
-
Zhang, Y.1
Zhou, H.2
Ou-Yang, Z.C.3
-
43
-
-
0034674420
-
A single-molecule study of RNA catalysis and folding
-
Zhuang, X. W., L. E. Bartley, H. P. Babcock, R. Russell, T. J. Ha, D. Herschlag, and S. Chu. 2000. A single-molecule study of RNA catalysis and folding. Science. 288:2048-2051.
-
(2000)
Science
, vol.288
, pp. 2048-2051
-
-
Zhuang, X.W.1
Bartley, L.E.2
Babcock, H.P.3
Russell, R.4
Ha, T.J.5
Herschlag, D.6
Chu, S.7
|