메뉴 건너뛰기




Volumn 110, Issue 35, 2013, Pages 14396-14401

DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array

Author keywords

Acquisition step; Defense mechanism; Phage host interaction

Indexed keywords

BACTERIAL DNA;

EID: 84883338164     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1300108110     Document Type: Article
Times cited : (57)

References (25)
  • 1
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini LA, Sontheimer EJ (2008) CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322(5909):1843-1845.
    • (2008) Science , vol.322 , Issue.5909 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 2
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • Barrangou R, et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315(5819):1709-1712.
    • (2007) Science , vol.315 , Issue.5819 , pp. 1709-1712
    • Barrangou, R.1
  • 3
    • 49649114086 scopus 로고    scopus 로고
    • Small CRISPR RNAs guide antiviral defense in prokaryotes
    • Brouns SJ, et al. (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321(5891):960-964.
    • (2008) Science , vol.321 , Issue.5891 , pp. 960-964
    • Brouns, S.J.1
  • 4
    • 70449753811 scopus 로고    scopus 로고
    • RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
    • Hale CR, et al. (2009) RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 139(5):945-956.
    • (2009) Cell , vol.139 , Issue.5 , pp. 945-956
    • Hale, C.R.1
  • 5
    • 84862190119 scopus 로고    scopus 로고
    • The bacterial CRISPR/Cas system as analog of the mammalian adaptive immune system
    • Goren M, Yosef I, Edgar R, Qimron U (2012) The bacterial CRISPR/Cas system as analog of the mammalian adaptive immune system. RNA Biol 9(5):549-554.
    • (2012) RNA Biol , vol.9 , Issue.5 , pp. 549-554
    • Goren, M.1    Yosef, I.2    Edgar, R.3    Qimron, U.4
  • 6
    • 84861539064 scopus 로고    scopus 로고
    • Bacterial 'immunity' against bacteriophages
    • Abedon ST (2012) Bacterial 'immunity' against bacteriophages. Bacteriophage 2(1): 50-54.
    • (2012) Bacteriophage , vol.2 , Issue.1 , pp. 50-54
    • Abedon, S.T.1
  • 7
    • 80755187812 scopus 로고    scopus 로고
    • CRISPR-Cas systems in bacteria and archaea: Versatile small RNAs for adaptive defense and regulation
    • Bhaya D, Davison M, Barrangou R (2011) CRISPR-Cas systems in bacteria and archaea: Versatile small RNAs for adaptive defense and regulation. Annu Rev Genet 45: 273-297.
    • (2011) Annu Rev Genet , vol.45 , pp. 273-297
    • Bhaya, D.1    Davison, M.2    Barrangou, R.3
  • 8
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft B, Sternberg SH, Doudna JA (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature 482(7385):331-338.
    • (2012) Nature , vol.482 , Issue.7385 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 9
    • 79956157571 scopus 로고    scopus 로고
    • Evolution and classification of the CRISPR-Cas systems
    • Makarova KS, et al. (2011) Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol 9(6):467-477.
    • (2011) Nat Rev Microbiol , vol.9 , Issue.6 , pp. 467-477
    • Makarova, K.S.1
  • 10
    • 77956628107 scopus 로고    scopus 로고
    • Transcription, processing and function of CRISPR cassettes in Escherichia coli
    • Pougach K, et al. (2010) Transcription, processing and function of CRISPR cassettes in Escherichia coli. Mol Microbiol 77(6):1367-1379.
    • (2010) Mol Microbiol , vol.77 , Issue.6 , pp. 1367-1379
    • Pougach, K.1
  • 11
    • 84861639567 scopus 로고    scopus 로고
    • Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
    • Yosef I, Goren MG, Qimron U (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 40(12):5569-5576.
    • (2012) Nucleic Acids Res , vol.40 , Issue.12 , pp. 5569-5576
    • Yosef, I.1    Goren, M.G.2    Qimron, U.3
  • 12
    • 77957935381 scopus 로고    scopus 로고
    • CRISPR/Cas system and its role in phagebacteria interactions
    • Deveau H, Garneau JE, Moineau S (2010) CRISPR/Cas system and its role in phagebacteria interactions. Annu Rev Microbiol 64:475-493.
    • (2010) Annu Rev Microbiol , vol.64 , pp. 475-493
    • Deveau, H.1    Garneau, J.E.2    Moineau, S.3
  • 13
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR-A widespread system that provides acquired resistance against phages in bacteria and archaea
    • Sorek R, Kunin V, Hugenholtz P (2008) CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol 6(3): 181-186.
    • (2008) Nat Rev Microbiol , vol.6 , Issue.3 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 14
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • Marraffini LA, Sontheimer EJ (2010) CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat Rev Genet 11(3):181-190.
    • (2010) Nat Rev Genet , vol.11 , Issue.3 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 15
    • 84860433123 scopus 로고    scopus 로고
    • CRISPR interference directs strand specific spacer acquisition
    • Swarts DC, Mosterd C, van Passel MW, Brouns SJ (2012) CRISPR interference directs strand specific spacer acquisition. PLoS ONE 7(4):e35888.
    • (2012) PLoS ONE , vol.7 , Issue.4
    • Swarts, D.C.1    Mosterd, C.2    Van Passel, M.W.3    Brouns, S.J.4
  • 16
    • 84864864464 scopus 로고    scopus 로고
    • Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
    • Datsenko KA, et al. (2012) Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat Commun 3:945.
    • (2012) Nat Commun , vol.3 , pp. 945
    • Datsenko, K.A.1
  • 17
    • 84866313681 scopus 로고    scopus 로고
    • Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli
    • Goren MG, Yosef I, Auster O, Qimron U (2012) Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli. J Mol Biol 423(1): 14-16.
    • (2012) J Mol Biol , vol.423 , Issue.1 , pp. 14-16
    • Goren, M.G.1    Yosef, I.2    Auster, O.3    Qimron, U.4
  • 18
    • 38949123143 scopus 로고    scopus 로고
    • Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
    • Deveau H, et al. (2008) Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol 190(4):1390-1400.
    • (2008) J Bacteriol , vol.190 , Issue.4 , pp. 1390-1400
    • Deveau, H.1
  • 19
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • Bolotin A, Quinquis B, Sorokin A, Ehrlich SD (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151(Pt 8):2551-2561.
    • (2005) Microbiology , vol.151 , Issue.PART 8 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 20
    • 84879021475 scopus 로고    scopus 로고
    • High-throughput analysis of type I-E CRISPR/Cas spacer acquisition in E. Coli
    • Savitskaya E, Semenova E, Dedkov V, Metlitskaya A, Severinov K (2013) High-throughput analysis of type I-E CRISPR/Cas spacer acquisition in E. coli. RNA Biol 10(5):716-725.
    • (2013) RNA Biol , vol.10 , Issue.5 , pp. 716-725
    • Savitskaya, E.1    Semenova, E.2    Dedkov, V.3    Metlitskaya, A.4    Severinov, K.5
  • 21
    • 84874619358 scopus 로고    scopus 로고
    • Strong bias in the bacterial CRISPR elements that confer immunity to phage
    • Paez-Espino D, et al. (2013) Strong bias in the bacterial CRISPR elements that confer immunity to phage. Nat Commun 4:1430.
    • (2013) Nat Commun , vol.4 , pp. 1430
    • Paez-Espino, D.1
  • 22
    • 78651083184 scopus 로고    scopus 로고
    • A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
    • Babu M, et al. (2011) A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol Microbiol 79(2):484-502.
    • (2011) Mol Microbiol , vol.79 , Issue.2 , pp. 484-502
    • Babu, M.1
  • 23
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C (2009) Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155(Pt 3):733-740.
    • (2009) Microbiology , vol.155 , Issue.PART 3 , pp. 733-740
    • Mojica, F.J.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Almendros, C.4
  • 24
    • 75749118174 scopus 로고    scopus 로고
    • Self versus non-self discrimination during CRISPR RNA-directed immunity
    • Marraffini LA, Sontheimer EJ (2010) Self versus non-self discrimination during CRISPR RNA-directed immunity. Nature 463(7280):568-571.
    • (2010) Nature , vol.463 , Issue.7280 , pp. 568-571
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 25
    • 84856792673 scopus 로고    scopus 로고
    • Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs
    • Hale CR, et al. (2012) Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs. Mol Cell 45(3):292-302.
    • (2012) Mol Cell , vol.45 , Issue.3 , pp. 292-302
    • Hale, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.