-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0031859323
-
Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: Catabolic genes dispersed on the genome
-
J Armengaud B Happe KN Timmis 1998 Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: catabolic genes dispersed on the genome J Bacteriol 180 3954 3966 (Pubitemid 28361593)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.15
, pp. 3954-3966
-
-
Armengaud, J.1
Happe, B.2
Timmis, K.N.3
-
3
-
-
0034016917
-
Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers
-
DOI 10.1128/AEM.66.5.1834-1843.2000
-
L Bastiaens D Springael P Wattiau H Harms R deWachter H Verachtert L Diels 2000 Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers Appl Environ Microbiol 66 1834 1843 (Pubitemid 30253698)
-
(2000)
Applied and Environmental Microbiology
, vol.66
, Issue.5
, pp. 1834-1843
-
-
Bastiaens, L.1
Springael, D.2
Wattiau, P.3
Harms, H.4
DeWachter, R.5
Verachtert, H.6
Diels, L.7
-
4
-
-
0035711112
-
Aromatic dioxygenases: Molecular biocatalysis and applications
-
DOI 10.1016/S0958-1669(01)00264-6
-
DR Boyd ND Sharma CCR Allen 2001 Aromatic dioxygenases: molecular biocatalysis and applications Curr Opin Biotechnol 12 564 573 (Pubitemid 34146507)
-
(2001)
Current Opinion in Biotechnology
, vol.12
, Issue.6
, pp. 564-573
-
-
Boyd, D.R.1
Sharma, N.D.2
Allen, C.C.R.3
-
5
-
-
55849140950
-
Azaarene cis-dihydrodiol-derived 2,2'-bipyridine ligands for asymmetric allylic oxidation and cyclopropanation
-
DR Boyd ND Sharma L Sbircea D Murphy T Belhocine JF Malone SL James CCR Allen JTG Hamilton 2008 Azaarene cis-dihydrodiol-derived 2,2'-bipyridine ligands for asymmetric allylic oxidation and cyclopropanation Chem Commun 43 5535 5537
-
(2008)
Chem Commun
, vol.43
, pp. 5535-5537
-
-
Boyd, D.R.1
Sharma, N.D.2
Sbircea, L.3
Murphy, D.4
Belhocine, T.5
Malone, J.F.6
James, S.L.7
Allen, C.C.R.8
Hamilton, J.T.G.9
-
6
-
-
0027484182
-
Dibenzofuran 4,4a-dioxygenase from Sphingomonas sp. strain RW1: Angular dioxygenation by a three-component enzyme system
-
PV Bunz AM Cook 1993 Dibenzofuran 4,4a-dioxygenase from Sphingomonas sp. strain RW1: angular dioxygenation by a three-component enzyme system J Bacteriol 175 6467 6475 (Pubitemid 23315478)
-
(1993)
Journal of Bacteriology
, vol.175
, Issue.20
, pp. 6467-6475
-
-
Bunz, P.V.1
Cook, A.M.2
-
7
-
-
0031060718
-
Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases
-
CS Butler JR Mason 1997 Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases Adv Microb Physiol 38 47 84 (Pubitemid 26377553)
-
(1997)
Advances in Microbial Physiology
, vol.38
, pp. 47-84
-
-
Butler, C.S.1
Mason, J.R.2
-
8
-
-
0036718377
-
Organization and regulation of pentachlorophenol-degrading genes in Sphingobium chlorophenolicum ATCC 39723
-
M Cai L Xun 2002 Organization and regulation of pentachlorophenol- degrading genes in Sphingobium chlorophenolicum ATCC 39723 J Bacteriol 184 4672 4680
-
(2002)
J Bacteriol
, vol.184
, pp. 4672-4680
-
-
Cai, M.1
Xun, L.2
-
9
-
-
33847168352
-
Biodegradation of polycyclic aromatic hydrocarbons
-
CE Cerniglia 1992 Biodegradation of polycyclic aromatic hydrocarbons Biodegradation 3 351 368
-
(1992)
Biodegradation
, vol.3
, pp. 351-368
-
-
Cerniglia, C.E.1
-
10
-
-
0027390501
-
Analysis of Pseudomonas gene products using lacI(q)/Ptrp-lac plasmids and transposons that confer conditional phenotypes
-
DOI 10.1016/0378-1119(93)90533-9
-
q/Ptrp-lac plasmids and transposons that confer conditional phenotypes Gene 123 17 24 (Pubitemid 23035786)
-
(1993)
Gene
, vol.123
, Issue.1
, pp. 17-24
-
-
De Lorenzo, V.1
Eltis, L.2
Kessler, B.3
Timmis, K.N.4
-
11
-
-
8744268521
-
Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons
-
DOI 10.1128/AEM.70.11.6714-6725.2004
-
S Demaneche C Meyer J Micoud M Louwagie JC Willison Y Jouanneau 2004 Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons Appl Environ Microbiol 70 6714 6725 (Pubitemid 39518583)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.11
, pp. 6714-6725
-
-
Demaneche, S.1
Meyer, C.2
Micoud, J.3
Louwagie, M.4
Willison, J.C.5
Jouanneau, Y.6
-
12
-
-
34447321557
-
Measurement of biodegradability parameters for single unsubstituted and methylated polycyclic aromatic hydrocarbons in liquid bacterial suspensions
-
DOI 10.1002/bit.21268
-
P Dimitriou-Christidis RL Autenrieth TJ McDonald AM Desai 2007 Measurement of biodegradability parameters for single unsubstituted and methylated polycyclic aromatic hydrocarbons in liquid bacterial suspensions Biotechnol Bioeng 97 922 932 (Pubitemid 47051061)
-
(2007)
Biotechnology and Bioengineering
, vol.97
, Issue.4
, pp. 922-932
-
-
Dimitriou-Christidis, P.1
Autenrieth, R.L.2
McDonald, T.J.3
Desai, A.M.4
-
13
-
-
0030897550
-
Plasmid-mediated mineralization of carbofuran by Sphingomonas sp. strain CF06
-
X Feng LT Ou A Ogram 1997 Plasmid-mediated mineralization of carbofuran by Sphingomonas sp. strain CF06 Appl Environ Microbiol 63 1332 1337 (Pubitemid 27174836)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.4
, pp. 1332-1337
-
-
Feng, X.1
Ou, L.-T.2
Ogram, A.3
-
15
-
-
0025264586
-
Metabolism of dibenzofuran by Pseudomonas sp. strain HH69 and the mixed culture HH27
-
P Fortnagel H Harms RM Wittich S Krohn H Meyer V Sinnwell H Wilkes W Francke 1990 Metabolism of dibenzofuran by Pseudomonas sp. strain HH69 and the mixed culture HH27 Appl Environ Microbiol 56 1148 1156 (Pubitemid 20114477)
-
(1990)
Applied and Environmental Microbiology
, vol.56
, Issue.4
, pp. 1148-1156
-
-
Fortnagel, P.1
Harms, H.2
Wittich, R.-M.3
Krohn, S.4
Meyer, H.5
Sinnwell, V.6
Wilkes, H.7
Francke, W.8
-
16
-
-
0348150711
-
Novosphingobium tardaugens sp. nov., an oestradiol-degrading bacterium isolated from activated sludge of a sewage treatment plant in Tokyo
-
DOI 10.1099/ijs.0.02301-0
-
K Fujii M Satomi N Morita T Motomura T Tanaka S Kikuchi 2003 Novosphingobium tardaugens sp. nov., an oestradiol-degrading bacterium isolated from activated sludge of a sewage treatment plant in Tokyo Int J Syst Evol Microbiol 53 47 52 (Pubitemid 36285219)
-
(2003)
International Journal of Systematic and Evolutionary Microbiology
, vol.53
, Issue.1
, pp. 47-52
-
-
Fujii, K.1
Satomi, M.2
Morita, N.3
Motomura, T.4
Tanaka, T.5
Kikuchi, S.6
-
17
-
-
3843075198
-
Biphenyl dioxygenases: Functional versatilities and directed evolution
-
DOI 10.1128/JB.186.16.5189-5196.2004
-
K Furukawa H Suenaga M Goto 2004 Biphenyl dioxygenases: functional versatilities and directed evolution J Bacteriol 186 5189 5196 (Pubitemid 39038121)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.16
, pp. 5189-5196
-
-
Furukawa, K.1
Suenaga, H.2
Goto, M.3
-
18
-
-
27144495787
-
Structure and increased thermostability of Rhodococcus sp. naphthalene 1,2-dioxygenase
-
DOI 10.1128/JB.187.21.7222-7231.2005
-
L Gakhar ZA Malik CCR Allen DA Lipscomb MJ Larkin S Ramaswamy 2005 Structure and increased thermostability of Rhodococcus sp. naphthalene 1,2-dioxygenase J Bacteriol 197 7222 7231 (Pubitemid 41507780)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.21
, pp. 7222-7231
-
-
Gakhar, L.1
Malik, Z.A.2
Allen, C.C.R.3
Lipscomb, D.A.4
Larkin, M.J.5
Ramaswamy, S.6
-
19
-
-
0027442082
-
Characterization of 2,2',3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium sphingomonas sp. strain RW1
-
B Happe LD Eltis H Poth R Hedderich KN Timmis 1993 Characterization of 2,2',3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. strain RW1 J Bacteriol 175 7313 7320 (Pubitemid 23339310)
-
(1993)
Journal of Bacteriology
, vol.175
, Issue.22
, pp. 7313-7320
-
-
Happe, B.1
Eltis, L.D.2
Poth, H.3
Hedderich, R.4
Timmis, K.N.5
-
20
-
-
0036245012
-
Biotransformation of 2,7-dichloro- and 1,2,3,4-tetrachlorodibenzo-p- dioxin by Sphingomonas wittichii RW1
-
DOI 10.1128/AEM.68.5.2584-2588.2002
-
HB Hong YS Chang IH Nam P Fortnagel S Schmidt 2002 Biotransformation of 2,7-dichloro- and 1,2,3,4-tetrachlorodibenzo-p-dioxin by Sphingomonas wittichii RW1 Appl Environ Microbiol 68 2584 2588 (Pubitemid 34477863)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.5
, pp. 2584-2588
-
-
Hong, H.-B.1
Chang, Y.-S.2
Nam, I.-H.3
Fortnagel, P.4
Schmidt, S.5
-
22
-
-
34247578182
-
The crystal structure of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1
-
DOI 10.1111/j.1742-4658.2007.05783.x
-
J Jakoncic Y Jouanneau C Meyer V Stojanoff 2007 The crystal structure of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1 FEBS J 274 2470 2481 (Pubitemid 46669334)
-
(2007)
FEBS Journal
, vol.274
, Issue.10
, pp. 2470-2481
-
-
Jakoncic, J.1
Jouanneau, Y.2
Meyer, C.3
Stojanoff, V.4
-
23
-
-
0037989619
-
Mineralization of soil-aged isoproturon and isoproturon metabolites by Sphingomonas sp. strain SRS2
-
H Johannesen SR Sorensen J Aamand 2003 Mineralization of soil-aged isoproturon and isoproturon metabolites by Sphingomonas sp. strain SRS2 J Environ Qual 32 1250 1257 (Pubitemid 36918998)
-
(2003)
Journal of Environmental Quality
, vol.32
, Issue.4
, pp. 1250-1257
-
-
Johannesen, H.1
Sorensen, S.R.2
Aamand, J.3
-
24
-
-
16644396090
-
Principles of microbial PAH-degradation in soil
-
DOI 10.1016/j.envpol.2004.04.015
-
AR Johnsen LY Wick H Harms 2005 Principles of microbial PAH-degradation in soil Environ Pollut 133 71 84 (Pubitemid 41569171)
-
(2005)
Environmental Pollution
, vol.133
, Issue.1
, pp. 71-84
-
-
Johnsen, A.R.1
Wick, L.Y.2
Harms, H.3
-
25
-
-
33749528170
-
Characterization of a naphthalene dioxygenase endowed with an exceptionally broad substrate specificity toward polycyclic aromatic hydrocarbons
-
DOI 10.1021/bi0611311
-
Y Jouanneau C Meyer J Jakoncic V Stojanoff J Gaillard 2006 Characterization of a naphthalene dioxygenase endowed with an exceptionally broad substrate specificity toward polycyclic aromatic hydrocarbons Biochemistry 45 12380 12391 (Pubitemid 44527560)
-
(2006)
Biochemistry
, vol.45
, Issue.40
, pp. 12380-12391
-
-
Jouanneau, Y.1
Meyer, C.2
Jakoncic, J.3
Stojanoff, V.4
Gaillard, J.5
-
26
-
-
0032524127
-
Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase
-
B Kauppi K Lee E Carredano RE Parales DT Gibson H Eklund S Ramaswamy 1998 Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase Structure 6 571 586
-
(1998)
Structure
, vol.6
, pp. 571-586
-
-
Kauppi, B.1
Lee, K.2
Carredano, E.3
Parales, R.E.4
Gibson, D.T.5
Eklund, H.6
Ramaswamy, S.7
-
27
-
-
0033402149
-
Functional analysis of genes involved in biphenyl, naphthalenes, phenanthrene, and m-xylene degradation by Sphingomonas yanoikuyae b1
-
E Kim GJ Zylstra 1999 Functional analysis of genes involved in biphenyl, naphthalene, phenanthrene, and m-xylene degradation by Sphingomonas yanoikuyae B1 J Ind Microbiol Biotechnol 23 294 302 (Pubitemid 30066582)
-
(1999)
Journal of Industrial Microbiology and Biotechnology
, vol.23
, Issue.4-5
, pp. 294-302
-
-
Kim, E.1
Zylstra, G.J.2
-
28
-
-
0033854414
-
Polyphasic assignment of an aromatic-degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov.
-
S Kim J Chun K Bae Y Kim 2000 Polyphasic assignment of an aromatic-degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov Int J Syst Evol Microbiol 50 1641 1647 (Pubitemid 30601976)
-
(2000)
International Journal of Systematic and Evolutionary Microbiology
, vol.50
, Issue.4
, pp. 1641-1647
-
-
Kim, S.-J.1
Chun, J.2
Bae, K.S.3
Kim, Y.-C.4
-
29
-
-
1842733092
-
Sphingomonas sp. strain SB5 degrades carbofuran to a new metabolite by hydrolysis at the furanyl ring
-
IS Kim JY Ryu HG Hur MB Gu SD Kim JH Shim 2004 Sphingomonas sp. strain SB5 degrades carbofuran to a new metabolite by hydrolysis at the furanyl ring J Agric Food Chem 52 2309 2314
-
(2004)
J Agric Food Chem
, vol.52
, pp. 2309-2314
-
-
Kim, I.S.1
Ryu, J.Y.2
Hur, H.G.3
Gu, M.B.4
Kim, S.D.5
Shim, J.H.6
-
30
-
-
0037701540
-
Identification of pyrene-induced proteins in Mycobacterium sp. strain 6PY1: Evidence for two ring-hydroxylating dioxygenases
-
DOI 10.1128/JB.185.13.3828-3841.2003
-
S Krivobok S Kuony C Meyer M Louwagie JC Willison Y Jouanneau 2003 Identification of pyrene-induced proteins in Mycobacterium sp. strain 6PY1: evidence for two ring-hydroxylating dioxygenases J Bacteriol 185 3828 3841 (Pubitemid 36735934)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.13
, pp. 3828-3841
-
-
Krivobok, S.1
Kuony, S.2
Meyer, C.3
Louwagie, M.4
Willison, J.C.5
Jouanneau, Y.6
-
33
-
-
0021925630
-
Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals
-
M Mergeay D Nies HG Schlegel J Gerits P Charles F Van Gijsegem 1985 Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals J Bacteriol 162 328 334 (Pubitemid 15095872)
-
(1985)
Journal of Bacteriology
, vol.162
, Issue.1
, pp. 328-334
-
-
Mergeay, M.1
Nies, D.2
Schlegel, H.G.3
-
34
-
-
34547662500
-
Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1
-
DOI 10.1007/s10295-007-0235-3
-
SM Ni Chadhain EM Moritz E Kim GJ Zylstra 2007 Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae strain B1 J Ind Microbiol Biotechnol 34 605 613 (Pubitemid 47222998)
-
(2007)
Journal of Industrial Microbiology and Biotechnology
, vol.34
, Issue.9
, pp. 605-613
-
-
Ni Chadhain, S.M.1
Moritz, E.M.2
Kim, E.3
Zylstra, G.J.4
-
35
-
-
0037826062
-
The role of active-site residues in naphthalene dioxygenase
-
DOI 10.1007/s10295-003-0043-3
-
RE Parales 2003 The role of active-site residues in naphthalene dioxygenase J Ind Microbiol Biotechnol 30 271 278 (Pubitemid 36870613)
-
(2003)
Journal of Industrial Microbiology and Biotechnology
, vol.30
, Issue.5
, pp. 271-278
-
-
Parales, R.E.1
-
36
-
-
0032989253
-
Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity
-
RE Parales JV Parales DT Gibson 1999 Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity J Bacteriol 181 1831 1837 (Pubitemid 29138615)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.6
, pp. 1831-1837
-
-
Parales, R.E.1
Parales, J.V.2
Gibson, D.T.3
-
37
-
-
0034051818
-
Substrate specificity of naphthalene dioxygenase: Effect of specific amino acids at the active site of the enzyme
-
DOI 10.1128/JB.182.6.1641-1649.2000
-
RE Parales K Lee SM Resnick H Jiang DJ Lessner DT Gibson 2000 Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme J Bacteriol 182 1641 1649 (Pubitemid 30121129)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.6
, pp. 1641-1649
-
-
Parales, R.E.1
Lee, K.2
Resnick, S.M.3
Jiang, H.4
Lessner, D.J.5
Gibson, D.T.6
-
38
-
-
0033797753
-
Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: Control by phenylalanine 352 in the alpha subunit
-
RE Parales SM Resnick CL Yu DR Boyd ND Sharma DT Gibson 2000 Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: control by phenylalanine 352 in the alpha subunit J Bacteriol 182 5495 5504
-
(2000)
J Bacteriol
, vol.182
, pp. 5495-5504
-
-
Parales, R.E.1
Resnick, S.M.2
Yu, C.L.3
Boyd, D.R.4
Sharma, N.D.5
Gibson, D.T.6
-
39
-
-
0036731753
-
Characterization of the 5-carboxyvanillate decarboxylase gene and its role in lignin-related biphenyl catabolism in Sphingomonas paucimobilis SYK-6
-
X Peng E Masai H Kitayama K Harada Y Katayama M Fukuda 2002 Characterization of the 5-carboxyvanillate decarboxylase gene and its role in lignin-related biphenyl catabolism in Sphingomonas paucimobilis SYK-6 Appl Environ Microbiol 68 4407 4415
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4407-4415
-
-
Peng, X.1
Masai, E.2
Kitayama, H.3
Harada, K.4
Katayama, Y.5
Fukuda, M.6
-
40
-
-
0034308010
-
Identification of novel metabolites in the degradation of phenanthrene by Sphingomonas sp. strain P2
-
O Pinyakong H Habe N Supaka P Pinpanichkarn K Juntongjin T Yoshida K Furihata H Nojiri H Yamane T Omori 2000 Identification of novel metabolites in the degradation of phenanthrene by Sphingomonas sp. strain P2 FEMS Microbiol Lett 191 115 121
-
(2000)
FEMS Microbiol Lett
, vol.191
, pp. 115-121
-
-
Pinyakong, O.1
Habe, H.2
Supaka, N.3
Pinpanichkarn, P.4
Juntongjin, K.5
Yoshida, T.6
Furihata, K.7
Nojiri, H.8
Yamane, H.9
Omori, T.10
-
41
-
-
0038071684
-
The unique aromatic catabolic genes in sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs)
-
DOI 10.2323/jgam.49.1
-
O Pinyakong H Habe T Omori 2003 The unique aromatic catabolic genes in sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs) J Gen Appl Microbiol 49 1 19 (Pubitemid 36527148)
-
(2003)
Journal of General and Applied Microbiology
, vol.49
, Issue.1
, pp. 1-19
-
-
Pinyakong, O.1
Habe, H.2
Omori, T.3
-
42
-
-
0037423712
-
Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2
-
DOI 10.1016/S0006-291X(02)03036-X
-
O Pinyakong H Habe T Yoshida H Nojiri T Omori 2003 Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2 Biochem Biophys Res Commun 301 350 357 (Pubitemid 36279245)
-
(2003)
Biochemical and Biophysical Research Communications
, vol.301
, Issue.2
, pp. 350-357
-
-
Pinyakong, O.1
Habe, H.2
Yoshida, T.3
Nojiri, H.4
Omori, T.5
-
43
-
-
0027494959
-
Oxidation of carbazole to 3-hydroxycarbazole by naphthalene 1,2-dioxygenase and biphenyl 2,3-dioxygenase
-
DOI 10.1016/0378-1097(93)90221-M
-
SM Resnick DS Torok DT Gibson 1993 Oxidation of carbazole to 3-hydroxycarbazole by naphthalene 1,2-dioxygenase and biphenyl 2,3-dioxygenase FEMS Microbiol Lett 113 297 302 (Pubitemid 23332724)
-
(1993)
FEMS Microbiology Letters
, vol.113
, Issue.3
, pp. 297-302
-
-
Resnick, S.M.1
Torok, D.S.2
Gibson, D.T.3
-
44
-
-
0033027259
-
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
-
MF Romine LC Stillwell KK Wong SJ Thurston EC Sisk C Sensen T Gaasterland JK Fredrickson JD Saffer 1999 Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199 J Bacteriol 181 1585 1602 (Pubitemid 29110820)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.5
, pp. 1585-1602
-
-
Romine, M.F.1
Stillwell, L.C.2
Wong, K.-K.3
Thurston, S.J.4
Sisk, E.C.5
Sensen, C.6
Gaasterland, T.7
Fredrickson, J.K.8
Saffer, J.D.9
-
47
-
-
0041971073
-
Isolation from Agricultural Soil and Characterization of a Sphingomonas sp. Able to Mineralize the Phenylurea Herbicide Isoproturon
-
DOI 10.1128/AEM.67.12.5403-5409.2001
-
SR Sorensen Z Ronen J Aamand 2001 Isolation from agricultural soil and characterization of a Sphingomonas sp. able to mineralize the phenylurea herbicide isoproturon Appl Environ Microbiol 67 5403 5409 (Pubitemid 33640968)
-
(2001)
Applied and Environmental Microbiology
, vol.67
, Issue.12
, pp. 5403-5409
-
-
Sorensen, S.R.1
Ronen, Z.2
Aamand, J.3
-
48
-
-
0033375210
-
Degradation of substituted naphthalenesulfonic acids by Sphingomonas xenophaga BN6
-
A Stolz 1999 Degradation of substituted naphthalenesulfonic acids by Sphingomonas xenophaga BN6 J Ind Microbiol Biotechnol 23 391 399 (Pubitemid 30066596)
-
(1999)
Journal of Industrial Microbiology and Biotechnology
, vol.23
, Issue.4-5
, pp. 391-399
-
-
Stolz, A.1
-
49
-
-
0034802634
-
Convergent and divergent points in catabolic pathways involved in utilization of fluoranthene, naphthalene, anthracene, and phenanthrene by sphingomonas paucimobilis var. EPA505
-
DOI 10.1038/sj.jim.7000149
-
SP Story SH Parker SS Hayasaka MB Riley EL Kline 2001 Convergent and divergent points in catabolic pathways involved in utilization of fluoranthene, naphthalene, anthracene, and phenanthrene by Sphingomonas paucimobilis var. EPA505 J Ind Microbiol Biotechnol 26 369 382 (Pubitemid 32905253)
-
(2001)
Journal of Industrial Microbiology and Biotechnology
, vol.26
, Issue.6
, pp. 369-382
-
-
Story, S.P.1
Parker, S.H.2
Hayasaka, S.S.3
Riley, M.B.4
Kline, E.L.5
-
50
-
-
0031574072
-
The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
51
-
-
1642579660
-
Estimation of kinetic parameter for the biotransformation of three-ring azaarenes by the phenanthrene-degrading strain Sphingomonas sp. LH128
-
DOI 10.1897/03-147
-
R van Herwijnen C de Graaf HA Govers JR Parsons 2004 Estimation of kinetic parameter for the biotransformation of three-ring azaarenes by the phenanthrene-degrading strain Sphingomonas sp. LH128 Environ Toxicol Chem 23 331 338 (Pubitemid 38112561)
-
(2004)
Environmental Toxicology and Chemistry
, vol.23
, Issue.2
, pp. 331-338
-
-
Van Herwijnen, R.1
De Graaf, C.2
Govers, H.A.J.3
Parsons, J.R.4
-
52
-
-
0037015403
-
Mechanism and applications of Rieske non-heme iron dioxygenases
-
DOI 10.1016/S0141-0229(02)00129-1, PII S0141022902001291
-
LP Wackett 2002 Mechanism and application of Rieske non-heme iron dioxygenases Enzyme Microb Technol 31 577 587 (Pubitemid 35239843)
-
(2002)
Enzyme and Microbial Technology
, vol.31
, Issue.5
, pp. 577-587
-
-
Wackett, L.P.1
-
53
-
-
10444260518
-
Isolation and characterization of a novel sphingomonad capable of growth with chrysene as sole carbon and energy source
-
DOI 10.1016/j.femsle.2004.10.012, PII S037810970400730X
-
JC Willison 2004 Isolation and characterization of a novel sphingomonad capable of growth with chrysene as sole carbon and energy source FEMS Microbiol Lett 241 143 150 (Pubitemid 39642988)
-
(2004)
FEMS Microbiology Letters
, vol.241
, Issue.2
, pp. 143-150
-
-
Willison, J.C.1
-
54
-
-
0028329094
-
Cloning of cmpE, a plasmid-borne catechol 2,3-dioxygenase-encoding gene from the aromatic- and chloroaromatic-degrading Pseudomonas sp. HV3
-
DOI 10.1016/0378-1119(94)90792-7
-
K Yrjala L Paulin S Kilpi M Romantschuk 1994 Cloning of cmpE, a plasmid-borne catechol 2,3-dioxygenase-encoding gene from the aromatic- and chloroaromatic-degrading Pseudomonas sp. HV3 Gene 138 119 121 (Pubitemid 24087561)
-
(1994)
Gene
, vol.138
, Issue.1-2
, pp. 119-121
-
-
Yrjala, K.1
Paulin, L.2
Kilpi, S.3
Romantschuk, M.4
-
55
-
-
33947194500
-
Purification, characterization, and crystallization of the components of a biphenyl dioxygenase system from Sphingobium yanoikuyae B1
-
DOI 10.1007/s10295-006-0199-8
-
CL Yu W Liu DJ Ferraro EN Brown JV Parales S Ramaswamy GJ Zylstra DT Gibson RE Parales 2007 Purification, characterization, and crystallization of the components of a biphenyl dioxygenase system from Sphingobium yanoikuyae B1 J Ind Microbiol Biotechnol 34 311 324 (Pubitemid 46434820)
-
(2007)
Journal of Industrial Microbiology and Biotechnology
, vol.34
, Issue.4
, pp. 311-324
-
-
Yu, C.L.1
Liu, W.2
Ferraro, D.J.3
Brown, E.N.4
Parales, J.V.5
Ramaswamy, S.6
Zylstra, G.J.7
Gibson, D.T.8
Parales, R.E.9
-
56
-
-
0344393452
-
Pinpointing Biphenyl Dioxygenase Residues that Are Crucial for Substrate Interaction
-
DOI 10.1128/JB.185.23.6976-6980.2003
-
M Zielinski S Kahl HJ Hecht B Hofer 2003 Pinpointing biphenyl dioxygenase residues that are crucial for substrate interaction J Bacteriol 185 6976 6980 (Pubitemid 37444498)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.23
, pp. 6976-6980
-
-
Zielinski, M.1
Kahl, S.2
Hecht, H.-J.3
Hofer, B.4
-
57
-
-
33644941536
-
Generation of novel-substrate-accepting biphenyl dioxygenases through segmental random mutagenesis and identification of residues involved in enzyme specificity
-
M Zielinski S Kahl C Standfuss-Gabisch B Camara M Seeger B Hofer 2006 Generation of novel-substrate-accepting biphenyl dioxygenases through segmental random mutagenesis and identification of residues involved in enzyme specificity Appl Environ Microbiol 72 2191 2199
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 2191-2199
-
-
Zielinski, M.1
Kahl, S.2
Standfuss-Gabisch, C.3
Camara, B.4
Seeger, M.5
Hofer, B.6
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