-
1
-
-
73249127781
-
Degradation of pyrene by an enteric bacterium. Leclercia adecarboxylata PS4040
-
Sarma PM, Duraja P, Deshpande S, Lal B (2010) Degradation of pyrene by an enteric bacterium, Leclercia adecarboxylata PS4040. Biodegradation 21: 59-69.
-
(2010)
Biodegradation
, vol.21
, pp. 59-69
-
-
Sarma, P.M.1
Duraja, P.2
Deshpande, S.3
Lal, B.4
-
2
-
-
66349136181
-
Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways
-
Kim SJ, Kweon O, Cerniglia CE (2009) Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways. Curr Opin Microbiol 12: 301-309.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 301-309
-
-
Kim, S.J.1
Kweon, O.2
Cerniglia, C.E.3
-
3
-
-
34648822321
-
A proteomics strategy for the analysis of bacterial biodegradation pathways
-
Kim SI, Choi JS, Kahng HY (2007) A proteomics strategy for the analysis of bacterial biodegradation pathways. OMICS 11: 280-294.
-
(2007)
OMICS
, vol.11
, pp. 280-294
-
-
Kim, S.I.1
Choi, J.S.2
Kahng, H.Y.3
-
4
-
-
10644256477
-
Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using two-dimensional polyacrylamide gel electrophoresis and de novo sequencing methods
-
DOI 10.1002/pmic.200400872
-
Kim SJ, Jones RC, Cha CJ, Kweon O, Edmondson RD, et al. (2004) Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using two-dimensional polyacrylamide gel electrophoresis and de novo sequencing methods. Proteomics 4: 3899-3908. (Pubitemid 39657465)
-
(2004)
Proteomics
, vol.4
, Issue.12
, pp. 3899-3908
-
-
Kim, S.-J.1
Jones, R.C.2
Cha, C.-J.3
Kweon, O.4
Edmondson, R.D.5
Cerniglia, C.E.6
-
5
-
-
17844409365
-
Effects of pH on the degradation of phenanthrene and pyrene by Mycobacterium vanbaalenii PYR-1
-
DOI 10.1007/s00253-004-1796-y
-
Kim YH, Freeman JP, Moody JD, Engesser KH, Cerniglia CE (2005) Effects of pH on the degradation of phenanthrene and pyrene by Mycobacterium vanbaalenii PYR-1. Appl Microbiol Biotechnol 67: 275-285. (Pubitemid 40591281)
-
(2005)
Applied Microbiology and Biotechnology
, vol.67
, Issue.2
, pp. 275-285
-
-
Kim, Y.-H.1
Freeman, J.P.2
Moody, J.D.3
Engesser, K.-H.4
Cerniglia, C.E.5
-
6
-
-
33846251226
-
Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology
-
DOI 10.1128/JB.01310-06
-
Kim SJ, Kweon O, Jones RC, Freeman JP, Edmondson RD, et al. (2007) Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology. J Bacteriol 189: 464-472. (Pubitemid 46106379)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.2
, pp. 464-472
-
-
Kim, S.-J.1
Kweon, O.2
Jones, R.C.3
Freeman, J.P.4
Edmondson, R.D.5
Cerniglia, C.E.6
-
7
-
-
80052333923
-
Polycyclic aromatic hydrocarbon metabolic network in Mycobacterium vanbaalenii PYR-1
-
Kweon O, Kim SJ, Holland RD, Chen H, Kim DW, et al. (2011) Polycyclic aromatic hydrocarbon metabolic network in Mycobacterium vanbaalenii PYR-1. J Bacteriol 193: 4326-4337.
-
(2011)
J Bacteriol
, vol.193
, pp. 4326-4337
-
-
Kweon, O.1
Kim, S.J.2
Holland, R.D.3
Chen, H.4
Kim, D.W.5
-
8
-
-
33845538712
-
Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp strain KMS
-
DOI 10.1128/AEM.01274-06
-
Liang Y, Gardner DR, Miller CD, Chen D, Anderson AJ, et al. (2006) Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS. Appl Environ Microbiol 72: 7821-7828. (Pubitemid 44927689)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.12
, pp. 7821-7828
-
-
Liang, Y.1
Gardner, D.R.2
Miller, C.D.3
Chen, D.4
Anderson, A.J.5
Weimer, B.C.6
Sims, R.C.7
-
9
-
-
8744268521
-
Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons
-
DOI 10.1128/AEM.70.11.6714-6725.2004
-
Demaneche S, Meyer C, Micoud J, Louwagie M, Willison JC, et al. (2004) Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a sphingomonas strain that degrades various polycyclic aromatic hydrocarbons. Appl Environ Microbiol 70: 6714-6725. (Pubitemid 39518583)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.11
, pp. 6714-6725
-
-
Demaneche, S.1
Meyer, C.2
Micoud, J.3
Louwagie, M.4
Willison, J.C.5
Jouanneau, Y.6
-
10
-
-
5444269845
-
Novosphingobium pentaromativorans sp nov, a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment
-
DOI 10.1099/ijs.0.02945-0
-
Sohn JH, Kwon KK, Kang JH, Jung HB, Kim SJ (2004) Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment. Int J Syst Evol Microbiol 54: 1483-1487. (Pubitemid 39359960)
-
(2004)
International Journal of Systematic and Evolutionary Microbiology
, vol.54
, Issue.5
, pp. 1483-1487
-
-
Sohn, J.H.1
Kwon, K.K.2
Kang, J.-H.3
Jung, H.-B.4
Kim, S.-J.5
-
11
-
-
84863174887
-
Genome sequence of benzo(a)pyrene-degrading bacterium Novosphingobium pentaromativorans US6-1
-
Luo YR, Kang SG, Kim SJ, Kim MR, Li N, et al. (2012) Genome sequence of benzo(a)pyrene-degrading bacterium Novosphingobium pentaromativorans US6-1. J Bacteriol 194: 907.
-
(2012)
J Bacteriol
, vol.194
, pp. 907
-
-
Luo, Y.R.1
Kang, S.G.2
Kim, S.J.3
Kim, M.R.4
Li, N.5
-
12
-
-
84878555219
-
Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities
-
Aylward FO, McDonald BR, Adams SM, Valenzuela A, Schmidt RA, et al. (2013) Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities. Appl Environ Microbiol 79: 3724-3733.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 3724-3733
-
-
Aylward, F.O.1
McDonald, B.R.2
Adams, S.M.3
Valenzuela, A.4
Schmidt, R.A.5
-
13
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
14
-
-
33644540488
-
Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis
-
Kim YH, Cho K, Yun SH, Kim JY, Kwon KH, et al. (2006) Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis. Proteomics 6: 1301-1318.
-
(2006)
Proteomics
, vol.6
, pp. 1301-1318
-
-
Kim, Y.H.1
Cho, K.2
Yun, S.H.3
Kim, J.Y.4
Kwon, K.H.5
-
15
-
-
79953649470
-
Proteomic characterization of the Pseudomonas putida KT2440 global response to a monocyclic aromatic compound by iTRAQ analysis and 1DE-MudPIT
-
Yun SH, Park GW, Kim JY, Kwon SO, Choi CW, et al. (2011) Proteomic characterization of the Pseudomonas putida KT2440 global response to a monocyclic aromatic compound by iTRAQ analysis and 1DE-MudPIT. J Proteomics 74: 620-628.
-
(2011)
J Proteomics
, vol.74
, pp. 620-628
-
-
Yun, S.H.1
Park, G.W.2
Kim, J.Y.3
Kwon, S.O.4
Choi, C.W.5
-
16
-
-
84862827384
-
Analysis of Streptococcus pneumoniae secreted antigens by immuno-proteomic approach
-
Choi CW, Lee YG, Kwon SO, Kim HY, Lee JC, et al. (2012) Analysis of Streptococcus pneumoniae secreted antigens by immuno-proteomic approach. Diagn Microbiol Infect Dis 72: 318-327.
-
(2012)
Diagn Microbiol Infect Dis
, vol.72
, pp. 318-327
-
-
Choi, C.W.1
Lee, Y.G.2
Kwon, S.O.3
Kim, H.Y.4
Lee, J.C.5
-
17
-
-
84862336123
-
Proteome analyses of hydrogen-producing hyperthermophilic archaeon Thermococcus onnurineus NA1 in different one-carbon substrate culture conditions
-
M111 015420
-
Moon YJ, Kwon J, Yun SH, Lim HL, Kim MS, et al. (2012) Proteome analyses of hydrogen-producing hyperthermophilic archaeon Thermococcus onnurineus NA1 in different one-carbon substrate culture conditions. Mol Cell Proteomics 11: M111 015420.
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Moon, Y.J.1
Kwon, J.2
Yun, S.H.3
Lim, H.L.4
Kim, M.S.5
-
18
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
DOI 10.1073/pnas.95.25.14863
-
Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95: 14863-14868. (Pubitemid 29003722)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
19
-
-
33746218840
-
Prediction of protein subcellular localization
-
Yu CS, Chen YC, Lu CH, Hwang JK (2006) Prediction of protein subcellular localization. Proteins 64: 643-651.
-
(2006)
Proteins
, vol.64
, pp. 643-651
-
-
Yu, C.S.1
Chen, Y.C.2
Lu, C.H.3
Hwang, J.K.4
-
20
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
DOI 10.1016/j.jmb.2004.03.016, PII S0022283604002943
-
Kall L, Krogh A, Sonnhammer EL (2004) A combined transmembrane topology and signal peptide prediction method. J Mol Biol 338: 1027-1036. (Pubitemid 38542831)
-
(2004)
Journal of Molecular Biology
, vol.338
, Issue.5
, pp. 1027-1036
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.L.3
-
21
-
-
33746094664
-
Purification and characterization of an arene cis-dihydrodiol dehydrogenase endowed with broad substrate specificity toward polycyclic aromatic hydrocarbon dihydrodiols
-
DOI 10.1128/AEM.00395-06
-
Jouanneau Y, Meyer C (2006) Purification and characterization of an arene cis-dihydrodiol dehydrogenase endowed with broad substrate specificity toward polycyclic aromatic hydrocarbon dihydrodiols. Appl Environ Microbiol 72: 4726-4734. (Pubitemid 44078798)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.7
, pp. 4726-4734
-
-
Jouanneau, Y.1
Meyer, C.2
-
22
-
-
84861117351
-
Heterologous expression of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes from a novel pyrene-degrading betaproteobacterium
-
Singleton DR, Hu J, Aitken MD (2012) Heterologous expression of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes from a novel pyrene-degrading betaproteobacterium. Appl Environ Microbiol 78: 3552-3559.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 3552-3559
-
-
Singleton, D.R.1
Hu, J.2
Aitken, M.D.3
-
23
-
-
0242489088
-
Molecular Characterization and Substrate Preference of a Polycyclic Aromatic Hydrocarbon Dioxygenase from Cycloclasticus sp. Strain A5
-
DOI 10.1128/AEM.69.11.6688-6697.2003
-
Kasai Y, Shindo K, Harayama S, Misawa N (2003) Molecular characterization and substrate preference of a polycyclic aromatic hydrocarbon dioxygenase from Cycloclasticus sp. strain A5. Appl Environ Microbiol 69: 6688-6697. (Pubitemid 37420206)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.11
, pp. 6688-6697
-
-
Kasai, Y.1
Shindo, K.2
Harayama, S.3
Misawa, N.4
-
24
-
-
0033027259
-
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
-
Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, et al. (1999) Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J Bacteriol 181: 1585-1602. (Pubitemid 29110820)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.5
, pp. 1585-1602
-
-
Romine, M.F.1
Stillwell, L.C.2
Wong, K.-K.3
Thurston, S.J.4
Sisk, E.C.5
Sensen, C.6
Gaasterland, T.7
Fredrickson, J.K.8
Saffer, J.D.9
-
25
-
-
33947380626
-
The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole
-
DOI 10.1128/JB.01486-06
-
Shintani M, Urata M, Inoue K, Eto K, Habe H, et al. (2007) The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole. J Bacteriol 189: 2007-2020. (Pubitemid 46446164)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.5
, pp. 2007-2020
-
-
Shintani, M.1
Urata, M.2
Inoue, K.3
Eto, K.4
Habe, H.5
Omori, T.6
Yamane, H.7
Nojiri, H.8
|