Fungal and bacterial microbial community assessment during bioremediation assays in an aged creosote-polluted soil

Soil Biology and Biochemistry

Volumn 67, Issue , 2013, Pages 114-123

  Llado S ^a   Gracia E ^a   Solanas, A M ^a   Vinas M ^b  

^a UNIVERSITY OF BARCELONA   (Spain)

^b UNIVERSITAT POLITÈCNICA DE CATALUNYA   (Spain)

Author keywords

16SrRNA; Creosote; ITS; Mycoremediation; Polycyclic aromatic hydrocarbon (PAH); Trametes versicolor

Indexed keywords

16S RRNA; CREOSOTE; ITS; MYCOREMEDIATION; POLYCYCLIC AROMATIC HYDROCARBON (PAH); TRAMETES VERSICOLOR;

BIOREMEDIATION; BIOTECHNOLOGY; FUNGI; MICROORGANISMS; SOIL POLLUTION;

POLYCYCLIC AROMATIC HYDROCARBONS;

BACTERIUM; BIOASSAY; BIOREMEDIATION; CREOSOTE; FUNGUS; MICROBIAL COMMUNITY; PAH; SLURRY; SOIL MICROORGANISM; SOIL POLLUTION;

EID: 84884130844     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2013.08.010     Document Type: Article

References (40)

1. Abalos A., Viñas M., Sabaté J., Manresa M.A., Solanas A.M. Enhanced biodegradation of Casablanca crude oil by a microbial consortium in presence of a rhamnolipid produced by Pseudomonas aeruginosa AT10. Biodegradation 2004, 15:249-260.
2. Berns A.E., Philipp H., Narres H.-D., Burauel P., Vereecken H., Tappe W. Effect of gamma-sterilization and autoclaving on soil organic matter structure as studied by solid state NMR, UV and fluorescence spectroscopy. Eur. J. Soil Sci. 2008, 49:540-550.
3. Borràs E., Caminal G., Sarrà M., Novotný C. Effect of soil bacteria on the ability of polycyclic aromatic hydrocarbons (PAHs) removal by Trametes versicolor and Irpex lacteus from contaminated soil. Soil Biol. Biochem. 2010, 42:2087-2093.
4. Chaîneau C.H., Yepremian C., Vidalie J.F., Ducreux J., Ballerini D. Bioremediation of a crude oil-polluted soil: biodegradation, leaching and toxicity assessments. Water Air Soil Pollut. 2003, 144:419-440.
5. Chung N., Alexander M. Effect of concentration on sequestration and bioavailability of two polycyclic aromatic hydrocarbons. Environ. Sci. Technol. 1999, 33:3605-3608.
6. Collins P.J., Kotterman M., Field J.A., Dobson A. Oxidation of anthracene and benzo[a]pyrene by laccases from Trametes versicolor. Appl. Environ. Microbiol. 1996, 62:4563-4567.
7. Chulalaksananukul S., Gadd G.M., Sangvanich P., Sihanonth P., Piapukiew J., Vangnai A.S. Biodegradation of benzo(a)pyrene by a newly isolated Fusarium sp. FEMS Microbiol. Lett. 2006, 262:99-106.
8. Davis M.W., Lamar R.T. Evaluation of methods to extract ergosterol for quantitation of soil fungal biomass. Soil Biol. Biochem. 1992, 24:189-198.
9. Furuno S., Päzolt K., Rabe C., Neu T.R., Harms H., Wick L.Y. Fungal mycelia allow chemotactic dispersal of polycyclic aromatic hydrocarbon-degrading bacteria in water-unsaturated systems. Environ. Microbiol. 2009, 12:1391-1398.
10. Gao D., Du L., Yang J., Wu W.-M., Liang H. Acritical review of the application of white rot fungus to environmental pollution control. Crit. Rev. Biotechnol. 2010, 30:70-77.
11. Hareland W.A., Crawford R.L., Chapman P.J., Dagley S. Metabolic function and properties of 4-hydroxyphenylacetic acid 1-hydroxylase from Pseudomonas acidovorans. J.Bacteriol. 1975, 121:272-285.
12. Harms H., Schlosser D., Wick L.Y. Untapped potential: exploiting fungi in bioremediation of hazardous chemicals. Nat. Rev. Microbiol. 2011, 9:177-192.
13. Huber T., Faulkner G., Hugenholtz P. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 2004, 20:2317-2319.
14. Juhasz A.L., Naidu R. Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: a review of the microbial degradation of benzo[a]pyrene. Int. Biodeterior. Biodegrad. 2000, 45:57-88.
15. Lladó S., Jiménez N., Viñas M., Solanas A.M. Microbial populations related to PAH biodegradation in an aged biostimulated creosote-contaminated soil. Biodegradation 2009, 20:593-601.
16. Lang-Yona N., Dannemiller K., Yamamoto N., Burshtein N., Peccia J., Yarden, Rudich Y. Annual distribution of allergenic fungal spores in atmospheric particulate matter in the Eastern Mediterranean; a comparative study between ergosterol and quantitative PCR analysis. Atmos. Chem. Phys. 2012, 12:2681-2690.
17. Martínez-Pascual E., Jiménez N., Vidal-Gavilan G., Viñas M., Solanas A.M. Chemical and microbial community analysis during aerobic biostimulation assays of non-sulfonated alkyl-benzene-contaminated groundwater. Appl. Microbiol. Biotechnol. 2010, 88:985-995.
18. Mikesková H., Novotný C., Svobodová K. Interspecific interactions in mixed microbial cultures in a biodegradation perspective. Appl. Microbiol. Biotechnol. 2012, 95:861-870.
19. Novotny C., Erbanova P., Cajthaml T., Rothschild N., Dosoretz C., Sasek V. Irpex lacteus, a white rot fungus applicable to water and soil bioremediation. Appl. Microbiol. Biotechnol. 2000, 54:850-853.
20. Radtke C., Cook W.S., Anderson A. Factors affecting antagonism of the growth of Phanerochaete chrysosporium by bacteria isolated from soils. Appl. Microbiol. Biotechnol. 1994, 41:274-280.
21. Realp E., Domenech J.A., Martinez-García R., Restrepo C., Lladó S., Viñas M., Solanas A.M. Ensayo piloto de biorremediación por la tecnología de la biopila dinámica para la descontaminación de suelos contaminados por creosotas provenientes de las actividades dedicadas a la preparación de la madera. Residuos Rev. Téc. 2008, 102:38-49.
22. Rodriguez-Rodriguez C.E., Marco-Urrea E., Caminal G. Degradation of naproxen and carbamazepine in spiked sludge by slurry and solid-phase Trametes versicolor systems. Bioresour. Technol. 2010, 101:2259-2266.
23. Rúa J., Busto F., Arriaga D.D., Soler J. Glycogen in Phycomyces blakesleeanus: influence of growth conditions and nutrient limitation. Microbiology 1993, 139:217-222.
24. Sabaté J., Viñas M., Solanas A.M. Laboratory-scale bioremediation experiments on hydrocarbon-contaminated soils. Int. Biodeterior. Biodegrad. 2004, 54:19-25.
25. Sabaté J., Viñas M., Solanas A.M. Bioavailability assessment and environmental fate of polycyclic aromatic hydrocarbons in biostimulated creosote-contaminated soil. Chemosphere 2006, 63:1648-1659.
26. Semple K.T., Dew N.M., Doick K.J., Rhodes A.H. Can microbial mineralization be used to estimate microbial availability of organic contaminants in soil?. Environ. Pollut. 2006, 140:164-172.
27. Silvaa I.S., Grossmanb M., Durranta L.R. Degradation of polycyclic aromatic hydrocarbons (2-7 rings) under microaerobic and very-low-oxygen conditions by soil fungi. Int. Biodeterior. Biodegrad. 2009, 63:224-229.
28. Singh S.N., Tripathi R.D. Environmental Bioremediation Technologies 2007, Springer, New York.
29. Tay S.T., Hemond F.H., Krumholz L.R., Cavanaugh C.M., Polz M.F. Population dynamics of two toluene degrading bacterial species in a contaminated stream. Microb. Ecol. 2001, 41:124-131.
30. Viñas M., Sabate J., Espuny M.J., Solanas A.M. Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil. Appl. Environ. Microbiol. 2005, 71:7008-7018.
31. Viñas M., Sabaté J., Guasp C., Lalucat J., Solanas A.M. Culture-dependent and -independent approaches establish the complexity of a PAH-degrading microbial consortium. Can. J. Microbiol. 2005, 51:897-909.
32. Vyas B.R.M., Bakowski S., Šašek V., Matucha M. Degradation of anthracene by selected white rot fungi. FEMS Microbiol. Lett. 1994, 14:65-70.
33. Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 2007, 73:5261-5267.
34. White T.J., Bruns T.D., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: a Guide to Methods and Applications 1990, 315-322. Academic Press, New York. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
35. Wiesche C.I.D., Martens R., Zadrazil F. The effect of interaction between white-rot fungi and indigenous microorganisms on degradation of polycyclic aromatic hydrocarbons in soil. Water Air Soil Pollut. Focus 2003, 3:73-79.
36. Wolf D.C., Skipper H.D. Soil sterilization. Methods of Soil Analysis. Part 2: Microbiological and Biochemical Properties 1994, 41-51. Soil Science Society of America, Inc., Madison, WI. R.W. Weaver, S. Angle, P. Bottomley, D. Bezdicek, S. Smith, A. Tabatabai, A. Wollum (Eds.).
37. Wrenn B.A., Venosa A.D. Selective enumeration of aromatic and aliphatic hydrocarbon degrading bacteria by a most-probable-number procedure. Can. J. Microbiol. 1996, 42:252-258.
38. Wu Y.R., Luo Z.H., Vrijmoed L.L. Biodegradation of anthracene and benz[a]anthracene by two Fusarium solani strains isolated from mangrove sediments. Bioresour. Technol. 2010, 101:9666-9672.
39. Yu Z., Morrison M. Comparisons of different hypervariable regions of RSS genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 2004, 70:4800-4806.
40. Zappi M.E., Rogers B.A., Teeter C.L., Gunninson D., Bajpai R. Bioslurry treatment of a soil contaminated with low concentrations of total petroleum hydrocarbons. J.Hazard. Mater. 1996, 46:1-12.