메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Systematic quantification of HDR and NHEJ reveals effects of locus, nuclease, and cell type on genome-editing

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION ACTIVATOR LIKE EFFECTOR NUCLEASE;

EID: 84962866438     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep23549     Document Type: Article
Times cited : (190)

References (38)
  • 1
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M. et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816-821 (2012).
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1
  • 2
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • Mali, P. et al. RNA-guided human genome engineering via Cas9. Science 339, 823-826 (2013).
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1
  • 3
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819-823 (2013).
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1
  • 4
    • 84884288934 scopus 로고    scopus 로고
    • Double Nicking by RNA-Guided CRISPR Cas9 for enhanced genome editing specificity
    • Ran, F. A. et al. Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity. Cell 154, 1380-1389 (2013).
    • (2013) Cell , vol.154 , pp. 1380-1389
    • Ran, F.A.1
  • 5
    • 84884160273 scopus 로고    scopus 로고
    • CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali, P. et al. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol 31, 833-838 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 833-838
    • Mali, P.1
  • 6
    • 84902204289 scopus 로고    scopus 로고
    • Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing
    • Tsai, S. Q. et al. Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing. Nat Biotechnol 32, 569-576 (2014).
    • (2014) Nat Biotechnol , vol.32 , pp. 569-576
    • Tsai, S.Q.1
  • 7
    • 84902210542 scopus 로고    scopus 로고
    • Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification
    • Guilinger, J. P., Thompson, D. B., Liu, D. R. Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification. Nat Biotechnol 32, 577-582 (2014).
    • (2014) Nat Biotechnol , vol.32 , pp. 577-582
    • Guilinger, J.P.1    Thompson, D.B.2    Liu, D.R.3
  • 8
    • 84896733529 scopus 로고    scopus 로고
    • Crystal structure of Cas9 in complex with guide RNA and target DNA
    • Nishimasu, H. et al. Crystal structure of Cas9 in complex with guide RNA and target DNA. Cell 156, 935-949 (2014).
    • (2014) Cell , vol.156 , pp. 935-949
    • Nishimasu, H.1
  • 9
    • 84893157352 scopus 로고    scopus 로고
    • Structures of Cas9 endonucleases reveal RNA-mediated conformational activation
    • Jinek, M. et al. Structures of Cas9 endonucleases reveal RNA-mediated conformational activation. Science 343, 1247997 (2014).
    • (2014) Science , vol.343 , pp. 1247997
    • Jinek, M.1
  • 10
    • 84960911917 scopus 로고    scopus 로고
    • Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA
    • Richardson, C. D., Ray, G. J., DeWitt, M. A., Curie, G. L., Corn, J. E. Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA. Nat Biotechnol doi: 10.1038/nbt.3481 (2016).
    • (2016) Nat Biotechnol
    • Richardson, C.D.1    Ray, G.J.2    DeWitt, M.A.3    Curie, G.L.4    Corn, J.E.5
  • 11
    • 84866859751 scopus 로고    scopus 로고
    • Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
    • Gasiunas, G., Barrangou, R., Horvath, P., Siksnys, V. Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci USA 109, E2579-2586 (2012).
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. E2579-2586
    • Gasiunas, G.1    Barrangou, R.2    Horvath, P.3    Siksnys, V.4
  • 12
    • 84884165315 scopus 로고    scopus 로고
    • DNA targeting specificity of RNA-guided Cas9 nucleases
    • Hsu, P. D. et al. DNA targeting specificity of RNA-guided Cas9 nucleases. Nat Biotechnol 31, 827-832 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 827-832
    • Hsu, P.D.1
  • 13
    • 84880570576 scopus 로고    scopus 로고
    • High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
    • Fu, Y. et al. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 31, 822-826 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 822-826
    • Fu, Y.1
  • 14
    • 84983792922 scopus 로고    scopus 로고
    • Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery
    • Lin, S., Staahl, B. T., Alla, R. K., Doudna, J. A. Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery. Elife 3, e04766 (2014).
    • (2014) Elife , vol.3 , pp. e04766
    • Lin, S.1    Staahl, B.T.2    Alla, R.K.3    Doudna, J.A.4
  • 15
    • 79960978444 scopus 로고    scopus 로고
    • Tracking genome engineering outcome at individual DNA breakpoints
    • Certo, M. T. et al. Tracking genome engineering outcome at individual DNA breakpoints. Nat Methods 8, 671-676 (2011).
    • (2011) Nat Methods , vol.8 , pp. 671-676
    • Certo, M.T.1
  • 16
    • 84898046908 scopus 로고    scopus 로고
    • Quantifying genome-editing outcomes at endogenous loci with SMRT sequencing
    • Hendel, A. et al. Quantifying genome-editing outcomes at endogenous loci with SMRT sequencing. Cell Rep 7, 293-305 (2014).
    • (2014) Cell Rep , vol.7 , pp. 293-305
    • Hendel, A.1
  • 18
    • 0038359432 scopus 로고    scopus 로고
    • High-resolution genotyping by amplicon melting analysis using LCGreen
    • Wittwer, C. T., Reed, G. H., Gundry, C. N., Vandersteen, J. G., Pryor, R. J. High-resolution genotyping by amplicon melting analysis using LCGreen. Clin Chem 49, 853-860 (2003).
    • (2003) Clin Chem , vol.49 , pp. 853-860
    • Wittwer, C.T.1    Reed, G.H.2    Gundry, C.N.3    Vandersteen, J.G.4    Pryor, R.J.5
  • 19
    • 0037371570 scopus 로고    scopus 로고
    • Amplicon melting analysis with labeled primers: A closed-tube method for differentiating homozygotes and heterozygotes
    • Gundry, C. N. et al. Amplicon melting analysis with labeled primers: a closed-tube method for differentiating homozygotes and heterozygotes. Clin Chem 49, 396-406 (2003).
    • (2003) Clin Chem , vol.49 , pp. 396-406
    • Gundry, C.N.1
  • 20
    • 84895528015 scopus 로고    scopus 로고
    • Isolation of single-base genome-edited human iPS cells without antibiotic selection
    • Miyaoka, Y. et al. Isolation of single-base genome-edited human iPS cells without antibiotic selection. Nat Methods 11, 291-293 (2014).
    • (2014) Nat Methods , vol.11 , pp. 291-293
    • Miyaoka, Y.1
  • 21
    • 77954295352 scopus 로고    scopus 로고
    • ZiFiT (Zinc Finger Targeter): An updated zinc finger engineering tool
    • Sander, J. D. et al. ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool. Nucleic Acids Res 38, W462-468 (2010).
    • (2010) Nucleic Acids Res , vol.38 , pp. W462-468
    • Sander, J.D.1
  • 22
    • 34547605763 scopus 로고    scopus 로고
    • Zinc Finger Targeter (ZiFiT): An engineered zinc finger/target site design tool
    • W599-605
    • Sander, J. D., Zaback, P., Joung, J. K., Voytas, D. F., Dobbs, D. Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool. Nucleic Acids Res 35, W599-605 (2007).
    • (2007) Nucleic Acids Res , vol.35
    • Sander, J.D.1    Zaback, P.2    Joung, J.K.3    Voytas, D.F.4    Dobbs, D.5
  • 23
    • 79960064013 scopus 로고    scopus 로고
    • Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
    • Cermak, T. et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res 39, e82 (2011).
    • (2011) Nucleic Acids Res , vol.39 , pp. e82
    • Cermak, T.1
  • 24
    • 84885431901 scopus 로고    scopus 로고
    • A robust method to derive functional neural crest cells from human pluripotent stem cells
    • Kreitzer, F. R. et al. A robust method to derive functional neural crest cells from human pluripotent stem cells. Am J Stem Cells 2, 119-131 (2013).
    • (2013) Am J Stem Cells , vol.2 , pp. 119-131
    • Kreitzer, F.R.1
  • 25
    • 79955634826 scopus 로고    scopus 로고
    • A more efficient method to generate integration-free human iPS cells
    • Okita, K. et al. A more efficient method to generate integration-free human iPS cells. Nat Methods 8, 409-412 (2011).
    • (2011) Nat Methods , vol.8 , pp. 409-412
    • Okita, K.1
  • 26
    • 84936887731 scopus 로고    scopus 로고
    • mRNA transfection of a novel TAL effector nuclease (TALEN) facilitates efficient knockout of HIV co-receptor CCR5
    • Mock, U. et al. mRNA transfection of a novel TAL effector nuclease (TALEN) facilitates efficient knockout of HIV co-receptor CCR5. Nucleic Acids Res 43, 5560-5571 (2015).
    • (2015) Nucleic Acids Res , vol.43 , pp. 5560-5571
    • Mock, U.1
  • 28
    • 68949191192 scopus 로고    scopus 로고
    • Mutations in ribonucleic acid binding protein gene cause familial dilated cardiomyopathy
    • Brauch, K. M. et al. Mutations in ribonucleic acid binding protein gene cause familial dilated cardiomyopathy. J Am Coll Cardiol 54, 930-941 (2009).
    • (2009) J Am Coll Cardiol , vol.54 , pp. 930-941
    • Brauch, K.M.1
  • 29
    • 84975678715 scopus 로고    scopus 로고
    • Cpf1 is a single RNA-Guided endonuclease of a class 2 CRISPR-cas system
    • Zetsche, B. et al. Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System. Cell 163, 759-771 (2015).
    • (2015) Cell , vol.163 , pp. 759-771
    • Zetsche, B.1
  • 30
    • 84923275611 scopus 로고    scopus 로고
    • Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases
    • Frock, R. L. et al. Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases. Nat Biotechnol 33, 179-186 (2015).
    • (2015) Nat Biotechnol , vol.33 , pp. 179-186
    • Frock, R.L.1
  • 31
    • 84923266604 scopus 로고    scopus 로고
    • GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases
    • Tsai, S. Q. et al. GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases. Nat Biotechnol 33, 187-197 (2015).
    • (2015) Nat Biotechnol , vol.33 , pp. 187-197
    • Tsai, S.Q.1
  • 32
    • 84923221641 scopus 로고    scopus 로고
    • Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors
    • Wang, X. et al. Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors. Nat Biotechnol 33, 175-178 (2015).
    • (2015) Nat Biotechnol , vol.33 , pp. 175-178
    • Wang, X.1
  • 33
    • 84903943282 scopus 로고    scopus 로고
    • Whole-genome sequencing analysis reveals high specificity of CRISPR/Cas9 and TALEN-based genome editing in human iPSCs
    • Smith, C. et al. Whole-genome sequencing analysis reveals high specificity of CRISPR/Cas9 and TALEN-based genome editing in human iPSCs. Cell Stem Cell 15, 12-13 (2014).
    • (2014) Cell Stem Cell , vol.15 , pp. 12-13
    • Smith, C.1
  • 34
    • 84903942097 scopus 로고    scopus 로고
    • Targeted gene correction minimally impacts whole-genome mutational load in human-disease-specific induced pluripotent stem cell clones
    • Suzuki, K. et al. Targeted gene correction minimally impacts whole-genome mutational load in human-disease-specific induced pluripotent stem cell clones. Cell Stem Cell 15, 31-36 (2014).
    • (2014) Cell Stem Cell , vol.15 , pp. 31-36
    • Suzuki, K.1
  • 35
    • 84904010334 scopus 로고    scopus 로고
    • Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing
    • Veres, A. et al. Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing. Cell Stem Cell 15, 27-30 (2014).
    • (2014) Cell Stem Cell , vol.15 , pp. 27-30
    • Veres, A.1
  • 36
    • 84895871173 scopus 로고    scopus 로고
    • DNA interrogation by the CRISPR RNA-guided endonuclease Cas9
    • Sternberg, S. H., Redding, S., Jinek, M., Greene, E. C., Doudna, J. A. DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature 507, 62-67 (2014).
    • (2014) Nature , vol.507 , pp. 62-67
    • Sternberg, S.H.1    Redding, S.2    Jinek, M.3    Greene, E.C.4    Doudna, J.A.5
  • 37
    • 84896267457 scopus 로고    scopus 로고
    • Homology-directed repair of DNA nicks via pathways distinct from canonical double-strand break repair
    • Davis, L., Maizels, N. Homology-directed repair of DNA nicks via pathways distinct from canonical double-strand break repair. Proc Natl Acad Sci USA 111, E924-932 (2014).
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. E924-932
    • Davis, L.1    Maizels, N.2
  • 38
    • 84901291667 scopus 로고    scopus 로고
    • The mechanism of gene targeting in human somatic cells
    • Kan, Y., Ruis, B., Lin, S., Hendrickson, E. A. The mechanism of gene targeting in human somatic cells. PLoS Genet 10, e1004251 (2014).
    • (2014) PLoS Genet , vol.10 , pp. e1004251
    • Kan, Y.1    Ruis, B.2    Lin, S.3    Hendrickson, E.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.