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Volumn 7, Issue 1, 2014, Pages 293-305

Quantifying genome-editing outcomes at endogenous loci with SMRT sequencing

Author keywords

[No Author keywords available]

Indexed keywords

CHEMOKINE RECEPTOR CCR5; HEMOGLOBIN BETA CHAIN; INTERLEUKIN 2 RECEPTOR GAMMA; ENDONUCLEASE;

EID: 84898046908     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2014.02.040     Document Type: Article
Times cited : (101)

References (54)
  • 1
    • 84881060423 scopus 로고    scopus 로고
    • DonorDNA utilization during gene targeting with zinc-finger nucleases
    • Beumer K.J., Trautman J.K., Mukherjee K., Carroll D. DonorDNA utilization during gene targeting with zinc-finger nucleases. G3 2013, 3:657-664.
    • (2013) G3 , vol.3 , pp. 657-664
    • Beumer, K.J.1    Trautman, J.K.2    Mukherjee, K.3    Carroll, D.4
  • 2
    • 80053343092 scopus 로고    scopus 로고
    • TAL effectors: customizable proteins for DNA targeting
    • Bogdanove A.J., Voytas D.F. TAL effectors: customizable proteins for DNA targeting. Science 2011, 333:1843-1846.
    • (2011) Science , vol.333 , pp. 1843-1846
    • Bogdanove, A.J.1    Voytas, D.F.2
  • 3
    • 84866879789 scopus 로고    scopus 로고
    • Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers
    • Briggs A.W., Rios X., Chari R., Yang L., Zhang F., Mali P., Church G.M. Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers. Nucleic Acids Res. 2012, 40:e117.
    • (2012) Nucleic Acids Res. , vol.40
    • Briggs, A.W.1    Rios, X.2    Chari, R.3    Yang, L.4    Zhang, F.5    Mali, P.6    Church, G.M.7
  • 4
    • 84875200698 scopus 로고    scopus 로고
    • Functional implications of genome topology
    • Cavalli G., Misteli T. Functional implications of genome topology. Nat. Struct. Mol. Biol. 2013, 20:290-299.
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 290-299
    • Cavalli, G.1    Misteli, T.2
  • 7
    • 0041315884 scopus 로고    scopus 로고
    • Minicircle DNA vectors devoid of bacterial DNA result in persistent and high-level transgene expression invivo
    • Chen Z.Y., He C.Y., Ehrhardt A., Kay M.A. Minicircle DNA vectors devoid of bacterial DNA result in persistent and high-level transgene expression invivo. Mol. Ther. 2003, 8:495-500.
    • (2003) Mol. Ther. , vol.8 , pp. 495-500
    • Chen, Z.Y.1    He, C.Y.2    Ehrhardt, A.3    Kay, M.A.4
  • 12
    • 77953023690 scopus 로고    scopus 로고
    • Transient cold shock enhances zinc-finger nuclease-mediated gene disruption
    • Doyon Y., Choi V.M., Xia D.F., Vo T.D., Gregory P.D., Holmes M.C. Transient cold shock enhances zinc-finger nuclease-mediated gene disruption. Nat. Methods 2010, 7:459-460.
    • (2010) Nat. Methods , vol.7 , pp. 459-460
    • Doyon, Y.1    Choi, V.M.2    Xia, D.F.3    Vo, T.D.4    Gregory, P.D.5    Holmes, M.C.6
  • 15
    • 84857444298 scopus 로고    scopus 로고
    • Improving the efficiency of CHO cell line generation using glutamine synthetase gene knockout cells
    • Fan L., Kadura I., Krebs L.E., Hatfield C.C., Shaw M.M., Frye C.C. Improving the efficiency of CHO cell line generation using glutamine synthetase gene knockout cells. Biotechnol. Bioeng. 2012, 109:1007-1015.
    • (2012) Biotechnol. Bioeng. , vol.109 , pp. 1007-1015
    • Fan, L.1    Kadura, I.2    Krebs, L.E.3    Hatfield, C.C.4    Shaw, M.M.5    Frye, C.C.6
  • 17
    • 84879264708 scopus 로고    scopus 로고
    • ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering
    • Gaj T., Gersbach C.A., Barbas C.F. ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. Trends Biotechnol. 2013, 31:397-405.
    • (2013) Trends Biotechnol. , vol.31 , pp. 397-405
    • Gaj, T.1    Gersbach, C.A.2    Barbas, C.F.3
  • 18
    • 84876290140 scopus 로고    scopus 로고
    • Disorders of red cell volume regulation
    • Gallagher P.G. Disorders of red cell volume regulation. Curr. Opin. Hematol. 2013, 20:201-207.
    • (2013) Curr. Opin. Hematol. , vol.20 , pp. 201-207
    • Gallagher, P.G.1
  • 21
    • 67650045497 scopus 로고    scopus 로고
    • Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly
    • Kim H.J., Lee H.J., Kim H., Cho S.W., Kim J.S. Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly. Genome Res. 2009, 19:1279-1288.
    • (2009) Genome Res. , vol.19 , pp. 1279-1288
    • Kim, H.J.1    Lee, H.J.2    Kim, H.3    Cho, S.W.4    Kim, J.S.5
  • 24
    • 84860736700 scopus 로고    scopus 로고
    • High-efficiency TALEN-based gene editing produces disease-resistant rice
    • Li T., Liu B., Spalding M.H., Weeks D.P., Yang B. High-efficiency TALEN-based gene editing produces disease-resistant rice. Nat. Biotechnol. 2012, 30:390-392.
    • (2012) Nat. Biotechnol. , vol.30 , pp. 390-392
    • Li, T.1    Liu, B.2    Spalding, M.H.3    Weeks, D.P.4    Yang, B.5
  • 27
    • 84884856342 scopus 로고    scopus 로고
    • Cas9 as a versatile tool for engineering biology
    • Mali P., Esvelt K.M., Church G.M. Cas9 as a versatile tool for engineering biology. Nat. Methods 2013, 10:957-963.
    • (2013) Nat. Methods , vol.10 , pp. 957-963
    • Mali, P.1    Esvelt, K.M.2    Church, G.M.3
  • 28
    • 84856430123 scopus 로고    scopus 로고
    • Gene editing: not just for translation anymore
    • McMahon M.A., Rahdar M., Porteus M. Gene editing: not just for translation anymore. Nat. Methods 2012, 9:28-31.
    • (2012) Nat. Methods , vol.9 , pp. 28-31
    • McMahon, M.A.1    Rahdar, M.2    Porteus, M.3
  • 30
    • 80053039555 scopus 로고    scopus 로고
    • A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity
    • Mussolino C., Morbitzer R., Lütge F., Dannemann N., Lahaye T., Cathomen T. A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity. Nucleic Acids Res. 2011, 39:9283-9293.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 9283-9293
    • Mussolino, C.1    Morbitzer, R.2    Lütge, F.3    Dannemann, N.4    Lahaye, T.5    Cathomen, T.6
  • 33
    • 80052293623 scopus 로고    scopus 로고
    • Revealing off-target cleavage specificities of zinc-finger nucleases by invitro selection
    • Pattanayak V., Ramirez C.L., Joung J.K., Liu D.R. Revealing off-target cleavage specificities of zinc-finger nucleases by invitro selection. Nat. Methods 2011, 8:765-770.
    • (2011) Nat. Methods , vol.8 , pp. 765-770
    • Pattanayak, V.1    Ramirez, C.L.2    Joung, J.K.3    Liu, D.R.4
  • 35
    • 0038523969 scopus 로고    scopus 로고
    • Chimeric nucleases stimulate gene targeting in human cells
    • Porteus M.H., Baltimore D. Chimeric nucleases stimulate gene targeting in human cells. Science 2003, 300:763.
    • (2003) Science , vol.300 , pp. 763
    • Porteus, M.H.1    Baltimore, D.2
  • 36
    • 23444441147 scopus 로고    scopus 로고
    • Gene targeting using zinc finger nucleases
    • Porteus M.H., Carroll D. Gene targeting using zinc finger nucleases. Nat. Biotechnol. 2005, 23:967-973.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 967-973
    • Porteus, M.H.1    Carroll, D.2
  • 37
    • 84874643080 scopus 로고    scopus 로고
    • Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways
    • Qi Y., Zhang Y., Zhang F., Baller J.A., Cleland S.C., Ryu Y., Starker C.G., Voytas D.F. Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways. Genome Res. 2013, 23:547-554.
    • (2013) Genome Res. , vol.23 , pp. 547-554
    • Qi, Y.1    Zhang, Y.2    Zhang, F.3    Baller, J.A.4    Cleland, S.C.5    Ryu, Y.6    Starker, C.G.7    Voytas, D.F.8
  • 42
    • 79951694132 scopus 로고    scopus 로고
    • Meganucleases and other tools for targeted genome engineering: perspectives and challenges for gene therapy
    • Silva G., Poirot L., Galetto R., Smith J., Montoya G., Duchateau P., Pâques F. Meganucleases and other tools for targeted genome engineering: perspectives and challenges for gene therapy. Curr. Gene Ther. 2011, 11:11-27.
    • (2011) Curr. Gene Ther. , vol.11 , pp. 11-27
    • Silva, G.1    Poirot, L.2    Galetto, R.3    Smith, J.4    Montoya, G.5    Duchateau, P.6    Pâques, F.7
  • 44
    • 6344234817 scopus 로고    scopus 로고
    • Genetic steps of mammalian homologous repair with distinct mutagenic consequences
    • Stark J.M., Pierce A.J., Oh J., Pastink A., Jasin M. Genetic steps of mammalian homologous repair with distinct mutagenic consequences. Mol. Cell. Biol. 2004, 24:9305-9316.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 9305-9316
    • Stark, J.M.1    Pierce, A.J.2    Oh, J.3    Pastink, A.4    Jasin, M.5
  • 45
    • 77956125365 scopus 로고    scopus 로고
    • A flexible and efficient template format for circular consensus sequencing and SNP detection
    • Travers K.J., Chin C.S., Rank D.R., Eid J.S., Turner S.W. A flexible and efficient template format for circular consensus sequencing and SNP detection. Nucleic Acids Res. 2010, 38:e159.
    • (2010) Nucleic Acids Res. , vol.38
    • Travers, K.J.1    Chin, C.S.2    Rank, D.R.3    Eid, J.S.4    Turner, S.W.5
  • 49
    • 84873570368 scopus 로고    scopus 로고
    • Chromatin structure of two genomic sites for targeted transgene integration in induced pluripotent stem cells and hematopoietic stem cells
    • van Rensburg R., Beyer I., Yao X.Y., Wang H., Denisenko O., Li Z.Y., Russell D.W., Miller D.G., Gregory P., Holmes M., et al. Chromatin structure of two genomic sites for targeted transgene integration in induced pluripotent stem cells and hematopoietic stem cells. Gene Ther. 2013, 20:201-214.
    • (2013) Gene Ther. , vol.20 , pp. 201-214
    • van Rensburg, R.1    Beyer, I.2    Yao, X.Y.3    Wang, H.4    Denisenko, O.5    Li, Z.Y.6    Russell, D.W.7    Miller, D.G.8    Gregory, P.9    Holmes, M.10
  • 50
    • 84878568502 scopus 로고    scopus 로고
    • Generation of an HIV resistant T-cell line by targeted "stacking" of restriction factors
    • Voit R.A., McMahon M.A., Sawyer S.L., Porteus M.H. Generation of an HIV resistant T-cell line by targeted "stacking" of restriction factors. Mol. Ther. 2013, 21:786-795.
    • (2013) Mol. Ther. , vol.21 , pp. 786-795
    • Voit, R.A.1    McMahon, M.A.2    Sawyer, S.L.3    Porteus, M.H.4
  • 51
    • 84893315393 scopus 로고    scopus 로고
    • Nuclease-mediated gene editing by homologous recombination of the human globin locus
    • Voit R.A., Hendel A., Pruett-Miller S.M., Porteus M.H. Nuclease-mediated gene editing by homologous recombination of the human globin locus. Nucleic Acids Res. 2014, 42:1365-1378.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 1365-1378
    • Voit, R.A.1    Hendel, A.2    Pruett-Miller, S.M.3    Porteus, M.H.4
  • 52
    • 58149172086 scopus 로고    scopus 로고
    • Ensuring the fidelity of recombination in mammalian chromosomes
    • Waldman A.S. Ensuring the fidelity of recombination in mammalian chromosomes. Bioessays 2008, 30:1163-1171.
    • (2008) Bioessays , vol.30 , pp. 1163-1171
    • Waldman, A.S.1
  • 53
    • 84884289608 scopus 로고    scopus 로고
    • One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering
    • Yang H., Wang H., Shivalila C.S., Cheng A.W., Shi L., Jaenisch R. One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering. Cell 2013, 154:1370-1379.
    • (2013) Cell , vol.154 , pp. 1370-1379
    • Yang, H.1    Wang, H.2    Shivalila, C.S.3    Cheng, A.W.4    Shi, L.5    Jaenisch, R.6


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