-
1
-
-
0006297432
-
A biologic classification of pneumococci by means of immunity reactions
-
Dochez AR, Gillespie LJ, (1913) A biologic classification of pneumococci by means of immunity reactions. J Am Med Assoc 61: 727-732.
-
(1913)
J Am Med Assoc
, vol.61
, pp. 727-732
-
-
Dochez, A.R.1
Gillespie, L.J.2
-
2
-
-
0006297740
-
An immunological study of Pneumococcus mucosus
-
Hanes FM, (1914) An immunological study of Pneumococcus mucosus. J Exp Med 19: 38-51.
-
(1914)
J Exp Med
, vol.19
, pp. 38-51
-
-
Hanes, F.M.1
-
3
-
-
0345933216
-
The soluble specific substance of pneumococcus
-
Heidelberger M, Goebel WF, (1927) The soluble specific substance of pneumococcus. J Biol Chem 74: 613-618.
-
(1927)
J Biol Chem
, vol.74
, pp. 613-618
-
-
Heidelberger, M.1
Goebel, W.F.2
-
4
-
-
33744793500
-
Attachment of capsular polysaccharide to the cell wall of Streptococcus pneumoniae type 2 is required for invasive disease
-
Morona JK, Morona R, Paton JC, (2006) Attachment of capsular polysaccharide to the cell wall of Streptococcus pneumoniae type 2 is required for invasive disease. Proc Natl Acad Sci 103: 8505-8510.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 8505-8510
-
-
Morona, J.K.1
Morona, R.2
Paton, J.C.3
-
5
-
-
0021871309
-
Pneumococcal bacteraemia: 325 episodes diagnosed at St Thomas's Hospital
-
Gransden WR, Eykyn SJ, Phillips I, (1985) Pneumococcal bacteraemia: 325 episodes diagnosed at St Thomas's Hospital. Br Med J (Clin Res Ed) 290: 505-508.
-
(1985)
Br Med J (Clin Res Ed)
, vol.290
, pp. 505-508
-
-
Gransden, W.R.1
Eykyn, S.J.2
Phillips, I.3
-
6
-
-
66349135616
-
Pneumococcal serotypes and mortality following invasive pneumococcal disease: a population-based cohort study
-
Harboe ZB, Thomsen RW, Riis A, Valentiner-Branth P, Christensen JJ, et al. (2009) Pneumococcal serotypes and mortality following invasive pneumococcal disease: a population-based cohort study. PLoS Med 6: e1000081.
-
(2009)
PLoS Med
, vol.6
-
-
Harboe, Z.B.1
Thomsen, R.W.2
Riis, A.3
Valentiner-Branth, P.4
Christensen, J.J.5
-
7
-
-
0035006428
-
Influence of patient age on Streptococcus pneumoniae serotypes causing invasive disease
-
Inostroza J, Vinet AM, Retamal G, Lorca P, Ossa G, et al. (2001) Influence of patient age on Streptococcus pneumoniae serotypes causing invasive disease. Clin Diagn Lab Immunol 8: 556-559.
-
(2001)
Clin Diagn Lab Immunol
, vol.8
, pp. 556-559
-
-
Inostroza, J.1
Vinet, A.M.2
Retamal, G.3
Lorca, P.4
Ossa, G.5
-
8
-
-
0029783747
-
Serogroup-specific epidemiology of Streptococcus pneumoniae: associations with age, sex, and geography in 7,000 episodes of invasive disease
-
Scott JA, Hall AJ, Dagan R, Dixon JM, Eykyn SJ, et al. (1996) Serogroup-specific epidemiology of Streptococcus pneumoniae: associations with age, sex, and geography in 7,000 episodes of invasive disease. Clin Infect Dis 22: 973-981.
-
(1996)
Clin Infect Dis
, vol.22
, pp. 973-981
-
-
Scott, J.A.1
Hall, A.J.2
Dagan, R.3
Dixon, J.M.4
Eykyn, S.J.5
-
9
-
-
0020636158
-
Antibody response to pneumococcal vaccination in children younger than five years of age
-
Douglas RM, Paton JC, Duncan SJ, Hansman DJ, (1983) Antibody response to pneumococcal vaccination in children younger than five years of age. J Infect Dis 148: 131-137.
-
(1983)
J Infect Dis
, vol.148
, pp. 131-137
-
-
Douglas, R.M.1
Paton, J.C.2
Duncan, S.J.3
Hansman, D.J.4
-
10
-
-
0033831618
-
Molecular epidemiology of Streptococcus pneumoniae causing invasive disease in 5 countries
-
Henriques B, Kalin M, Ortqvist A, Olsson Liljequist B, Almela M, et al. (2000) Molecular epidemiology of Streptococcus pneumoniae causing invasive disease in 5 countries. J Infect Dis 182: 833-839.
-
(2000)
J Infect Dis
, vol.182
, pp. 833-839
-
-
Henriques, B.1
Kalin, M.2
Ortqvist, A.3
Olsson Liljequist, B.4
Almela, M.5
-
11
-
-
79957602411
-
Death or survival from invasive pneumococcal disease in Scotland: associations with serogroups and multilocus sequence types
-
Inverarity D, Lamb K, Diggle M, Robertson C, Greenhalgh D, et al. (2011) Death or survival from invasive pneumococcal disease in Scotland: associations with serogroups and multilocus sequence types. J Med Microbiol 60: 793-802.
-
(2011)
J Med Microbiol
, vol.60
, pp. 793-802
-
-
Inverarity, D.1
Lamb, K.2
Diggle, M.3
Robertson, C.4
Greenhalgh, D.5
-
12
-
-
10444285205
-
Serotype-specific mortality from invasive Streptococcus pneumoniae disease revisited
-
Martens P, Worm SW, Lundgren B, Konradsen HB, Benfield T, (2004) Serotype-specific mortality from invasive Streptococcus pneumoniae disease revisited. BMC Infect Dis 4: 21.
-
(2004)
BMC Infect Dis
, vol.4
, pp. 21
-
-
Martens, P.1
Worm, S.W.2
Lundgren, B.3
Konradsen, H.B.4
Benfield, T.5
-
13
-
-
79551650452
-
A contribution to the epidemiology of lobar pneumonia
-
Stillman EG, (1916) A contribution to the epidemiology of lobar pneumonia. J Exp Med 24: 651.
-
(1916)
J Exp Med
, vol.24
, pp. 651
-
-
Stillman, E.G.1
-
14
-
-
0026542944
-
Strong association between capsular type and virulence for mice among human isolates of Streptococcus pneumoniae
-
Briles DE, Crain MJ, Gray BM, Forman C, Yother J, (1992) Strong association between capsular type and virulence for mice among human isolates of Streptococcus pneumoniae. Infect Immun 60: 111-116.
-
(1992)
Infect Immun
, vol.60
, pp. 111-116
-
-
Briles, D.E.1
Crain, M.J.2
Gray, B.M.3
Forman, C.4
Yother, J.5
-
15
-
-
0017338976
-
Changes in occurrence of capsular serotypes of Streptococcus pneumoniae at Boston City Hospital during selected years between 1935 and 1974
-
Finland M, Barnes MW, (1977) Changes in occurrence of capsular serotypes of Streptococcus pneumoniae at Boston City Hospital during selected years between 1935 and 1974. J Clin Microbiol 5: 154-166.
-
(1977)
J Clin Microbiol
, vol.5
, pp. 154-166
-
-
Finland, M.1
Barnes, M.W.2
-
16
-
-
4644323852
-
Differences in survival, brain damage, and cerebrospinal fluid cytokine kinetics due to meningitis caused by 3 different Streptococcus pneumoniae serotypes: evaluation in humans and in 2 experimental models
-
Ostergaard C, Brandt C, Konradsen Helle B, Samuelsson S, (2004) Differences in survival, brain damage, and cerebrospinal fluid cytokine kinetics due to meningitis caused by 3 different Streptococcus pneumoniae serotypes: evaluation in humans and in 2 experimental models. J Infect Dis 190: 1212-1220.
-
(2004)
J Infect Dis
, vol.190
, pp. 1212-1220
-
-
Ostergaard, C.1
Brandt, C.2
Konradsen Helle, B.3
Samuelsson, S.4
-
17
-
-
20644464506
-
Craniotomy and Total Dissection as a Method in the Treatment of Abscess of the Brain
-
Fincher EF, (1946) Craniotomy and Total Dissection as a Method in the Treatment of Abscess of the Brain. Ann Surgery 123: 789.
-
(1946)
Ann Surgery
, vol.123
, pp. 789
-
-
Fincher, E.F.1
-
18
-
-
0021049229
-
Systemic disease caused by pneumococci
-
Colman G, Hallas G, (1983) Systemic disease caused by pneumococci. J Infect 7: 248-255.
-
(1983)
J Infect
, vol.7
, pp. 248-255
-
-
Colman, G.1
Hallas, G.2
-
19
-
-
23144435334
-
The multilocus sequence typing network: mlst.net
-
Aanensen DM, Spratt BG, (2005) The multilocus sequence typing network: mlst.net. Nucleic Acids Res 33: W728-733.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Aanensen, D.M.1
Spratt, B.G.2
-
20
-
-
0034963344
-
Nomenclature of major antimicrobial-resistant clones of Streptococcus pneumoniae defined by the pneumococcal molecular epidemiology network
-
McGee L, McDougal L, Zhou J, Spratt BG, Tenover FC, et al. (2001) Nomenclature of major antimicrobial-resistant clones of Streptococcus pneumoniae defined by the pneumococcal molecular epidemiology network. J Clin Microbiol 39: 2565-2571.
-
(2001)
J Clin Microbiol
, vol.39
, pp. 2565-2571
-
-
McGee, L.1
McDougal, L.2
Zhou, J.3
Spratt, B.G.4
Tenover, F.C.5
-
21
-
-
0031764441
-
A multilocus sequence typing scheme for Streptococcus pneumoniae: identification of clones associated with serious invasive disease
-
Enright MC, Spratt BG, (1998) A multilocus sequence typing scheme for Streptococcus pneumoniae: identification of clones associated with serious invasive disease. Microbiology 144 (Pt 11) (): 3049-3060.
-
(1998)
Microbiology
, vol.144
, Issue.Pt 11
, pp. 3049-3060
-
-
Enright, M.C.1
Spratt, B.G.2
-
22
-
-
45749147817
-
Molecular characteristics of serotype 3 Streptococcus pneumoniae isolates among community-acquired pneumonia patients in Japan
-
Isozumi R, Ito Y, Ishida T, Hirai T, Ito I, et al. (2008) Molecular characteristics of serotype 3 Streptococcus pneumoniae isolates among community-acquired pneumonia patients in Japan. J Infect Chemother 14: 258-261.
-
(2008)
J Infect Chemother
, vol.14
, pp. 258-261
-
-
Isozumi, R.1
Ito, Y.2
Ishida, T.3
Hirai, T.4
Ito, I.5
-
23
-
-
33644917475
-
Pre- and postvaccination clonal compositions of invasive pneumococcal serotypes for isolates collected in the United States in 1999, 2001, and 2002
-
Beall B, McEllistrem MC, Gertz RE Jr, Wedel S, Boxrud DJ, et al. (2006) Pre- and postvaccination clonal compositions of invasive pneumococcal serotypes for isolates collected in the United States in 1999, 2001, and 2002. J Clin Microbiol 44: 999-1017.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 999-1017
-
-
Beall, B.1
McEllistrem, M.C.2
Gertz Jr., R.E.3
Wedel, S.4
Boxrud, D.J.5
-
24
-
-
50549099118
-
Transmission of Streptococcus pneumoniae in an urban slum community
-
Reis JN, Palma T, Ribeiro GS, Pinheiro RM, Ribeiro CT, et al. (2008) Transmission of Streptococcus pneumoniae in an urban slum community. J Infect 57: 204-213.
-
(2008)
J Infect
, vol.57
, pp. 204-213
-
-
Reis, J.N.1
Palma, T.2
Ribeiro, G.S.3
Pinheiro, R.M.4
Ribeiro, C.T.5
-
25
-
-
79960289448
-
Molecular epidemiology and genetic diversity of pneumococcal carriage among children in Beni State, Bolivia
-
Inverarity D, Diggle M, Ure R, Johnson P, Altstadt P, et al. (2011) Molecular epidemiology and genetic diversity of pneumococcal carriage among children in Beni State, Bolivia. Trans Royal Soc Trop Med Hyg 105: 445-451.
-
(2011)
Trans Royal Soc Trop Med Hyg
, vol.105
, pp. 445-451
-
-
Inverarity, D.1
Diggle, M.2
Ure, R.3
Johnson, P.4
Altstadt, P.5
-
26
-
-
77956295617
-
Immunogenicity and safety of 13-valent pneumococcal conjugate vaccine in infants and toddlers
-
Yeh SH, Gurtman A, Hurley DC, Block SL, Schwartz RH, et al. (2010) Immunogenicity and safety of 13-valent pneumococcal conjugate vaccine in infants and toddlers. Pediatrics 126: e493-e505.
-
(2010)
Pediatrics
, vol.126
-
-
Yeh, S.H.1
Gurtman, A.2
Hurley, D.C.3
Block, S.L.4
Schwartz, R.H.5
-
27
-
-
34447632837
-
Phase 1 trial of a 13-valent pneumococcal conjugate vaccine in healthy adults
-
Scott DA, Komjathy SF, Hu BT, Baker S, Supan LA, et al. (2007) Phase 1 trial of a 13-valent pneumococcal conjugate vaccine in healthy adults. Vaccine 25: 6164-6166.
-
(2007)
Vaccine
, vol.25
, pp. 6164-6166
-
-
Scott, D.A.1
Komjathy, S.F.2
Hu, B.T.3
Baker, S.4
Supan, L.A.5
-
28
-
-
79951566871
-
Identification, variation and transcription of pneumococcal repeat sequences
-
Croucher NJ, Vernikos GS, Parkhill J, Bentley SD, (2011) Identification, variation and transcription of pneumococcal repeat sequences. BMC Genomics 12: 120.
-
(2011)
BMC Genomics
, vol.12
, pp. 120
-
-
Croucher, N.J.1
Vernikos, G.S.2
Parkhill, J.3
Bentley, S.D.4
-
29
-
-
67749108065
-
Comparative genomic analysis of ten Streptococcus pneumoniae temperate bacteriophages
-
Romero P, Croucher NJ, Hiller NL, Hu FZ, Ehrlich GD, et al. (2009) Comparative genomic analysis of ten Streptococcus pneumoniae temperate bacteriophages. J Bacteriol 191: 4854-4862.
-
(2009)
J Bacteriol
, vol.191
, pp. 4854-4862
-
-
Romero, P.1
Croucher, N.J.2
Hiller, N.L.3
Hu, F.Z.4
Ehrlich, G.D.5
-
30
-
-
53849086545
-
Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae
-
Brochet M, Couvé E, Glaser P, Guédon G, Payot S, (2008) Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol 190: 6913-6917.
-
(2008)
J Bacteriol
, vol.190
, pp. 6913-6917
-
-
Brochet, M.1
Couvé, E.2
Glaser, P.3
Guédon, G.4
Payot, S.5
-
31
-
-
62649124308
-
Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81
-
Croucher NJ, Walker D, Romero P, Lennard N, Paterson GK, et al. (2009) Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. J Bacteriol 191: 1480-1489.
-
(2009)
J Bacteriol
, vol.191
, pp. 1480-1489
-
-
Croucher, N.J.1
Walker, D.2
Romero, P.3
Lennard, N.4
Paterson, G.K.5
-
32
-
-
79251544864
-
Rapid pneumococcal evolution in response to clinical interventions
-
Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, et al. (2011) Rapid pneumococcal evolution in response to clinical interventions. Science 331: 430-434.
-
(2011)
Science
, vol.331
, pp. 430-434
-
-
Croucher, N.J.1
Harris, S.R.2
Fraser, C.3
Quail, M.A.4
Burton, J.5
-
33
-
-
84855261123
-
Detection of recombination events in bacterial genomes from large population samples
-
Marttinen P, Hanage WP, Croucher NJ, Connor TR, Harris SR, et al. (2012) Detection of recombination events in bacterial genomes from large population samples. Nucleic Acids Res 40: e6-e6.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Marttinen, P.1
Hanage, W.P.2
Croucher, N.J.3
Connor, T.R.4
Harris, S.R.5
-
34
-
-
79960629871
-
Time-dependent rates of molecular evolution
-
Ho SY, Lanfear R, Bromham L, Phillips MJ, Soubrier J, et al. (2011) Time-dependent rates of molecular evolution. Mol Ecology 20: 3087-3101.
-
(2011)
Mol Ecology
, vol.20
, pp. 3087-3101
-
-
Ho, S.Y.1
Lanfear, R.2
Bromham, L.3
Phillips, M.J.4
Soubrier, J.5
-
35
-
-
0032721182
-
The pspC gene of Streptococcus pneumoniae encodes a polymorphic protein, PspC, which elicits cross-reactive antibodies to PspA and provides immunity to pneumococcal bacteremia
-
Brooks-Walter A, Briles DE, Hollingshead SK, (1999) The pspC gene of Streptococcus pneumoniae encodes a polymorphic protein, PspC, which elicits cross-reactive antibodies to PspA and provides immunity to pneumococcal bacteremia. Infect Immun 67: 6533-6542.
-
(1999)
Infect Immun
, vol.67
, pp. 6533-6542
-
-
Brooks-Walter, A.1
Briles, D.E.2
Hollingshead, S.K.3
-
36
-
-
0033801656
-
Diversity of PspA: mosaic genes and evidence for past recombination in Streptococcus pneumoniae
-
Hollingshead SK, Becker R, Briles DE, (2000) Diversity of PspA: mosaic genes and evidence for past recombination in Streptococcus pneumoniae. Infect Immun 68: 5889-5900.
-
(2000)
Infect Immun
, vol.68
, pp. 5889-5900
-
-
Hollingshead, S.K.1
Becker, R.2
Briles, D.E.3
-
37
-
-
0019761907
-
Evidence for conjugal transfer of a Streptococcus faecalis transposon (Tn916) from a chromosomal site in the absence of plasmid DNA
-
Franke AE, Clewell DB, (1981) Evidence for conjugal transfer of a Streptococcus faecalis transposon (Tn916) from a chromosomal site in the absence of plasmid DNA. Cold Spring Harb Symp Quant Biol 45 Pt 1: 77-80.
-
(1981)
Cold Spring Harb Symp Quant Biol
, vol.45
, Issue.Pt 1
, pp. 77-80
-
-
Franke, A.E.1
Clewell, D.B.2
-
38
-
-
75649084906
-
Evolution of MRSA during hospital transmission and intercontinental spread
-
Harris SR, Feil EJ, Holden MT, Quail MA, Nickerson EK, et al. (2010) Evolution of MRSA during hospital transmission and intercontinental spread. Science 327: 469-474.
-
(2010)
Science
, vol.327
, pp. 469-474
-
-
Harris, S.R.1
Feil, E.J.2
Holden, M.T.3
Quail, M.A.4
Nickerson, E.K.5
-
39
-
-
48349124258
-
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
-
Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, et al. (2008) High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet 40: 987-993.
-
(2008)
Nat Genet
, vol.40
, pp. 987-993
-
-
Holt, K.E.1
Parkhill, J.2
Mazzoni, C.J.3
Roumagnac, P.4
Weill, F.X.5
-
40
-
-
67650087598
-
Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance
-
Feng J, Lupien A, Gingras H, Wasserscheid J, Dewar K, et al. (2009) Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance. Genome Res 19: 1214-1223.
-
(2009)
Genome Res
, vol.19
, pp. 1214-1223
-
-
Feng, J.1
Lupien, A.2
Gingras, H.3
Wasserscheid, J.4
Dewar, K.5
-
41
-
-
77957802374
-
Studying bacterial transcriptomes using RNA-seq
-
Croucher NJ, Thomson NR, (2010) Studying bacterial transcriptomes using RNA-seq. Curr Opin Microbiol 13: 619-624.
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 619-624
-
-
Croucher, N.J.1
Thomson, N.R.2
-
42
-
-
75649147010
-
A simple method for directional transcriptome sequencing using Illumina technology
-
Croucher NJ, Fookes MC, Perkins TT, Turner DJ, Marguerat SB, et al. (2009) A simple method for directional transcriptome sequencing using Illumina technology. Nucleic Acids Res 37: e148.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Croucher, N.J.1
Fookes, M.C.2
Perkins, T.T.3
Turner, D.J.4
Marguerat, S.B.5
-
43
-
-
78650674693
-
Over-expression of patA and patB, which encode ABC transporters, is associated with fluoroquinolone resistance in clinical isolates of Streptococcus pneumoniae
-
Garvey MI, Baylay AJ, Wong RL, Piddock LJ, (2011) Over-expression of patA and patB, which encode ABC transporters, is associated with fluoroquinolone resistance in clinical isolates of Streptococcus pneumoniae. Antimicrob Agents Chemother 55: 190-196.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 190-196
-
-
Garvey, M.I.1
Baylay, A.J.2
Wong, R.L.3
Piddock, L.J.4
-
44
-
-
77957236210
-
Fluoroquinolones induce the expression of patA and patB, which encode ABC efflux pumps in Streptococcus pneumoniae
-
El Garch F, Lismond A, Piddock LJ, Courvalin P, Tulkens PM, et al. (2010) Fluoroquinolones induce the expression of patA and patB, which encode ABC efflux pumps in Streptococcus pneumoniae. J Antimicrob Chemother 65: 2076-2082.
-
(2010)
J Antimicrob Chemother
, vol.65
, pp. 2076-2082
-
-
El Garch, F.1
Lismond, A.2
Piddock, L.J.3
Courvalin, P.4
Tulkens, P.M.5
-
45
-
-
42949152261
-
The efflux pump inhibitor reserpine selects multidrug-resistant Streptococcus pneumoniae strains that overexpress the ABC transporters PatA and PatB
-
Garvey MI, Piddock LJ, (2008) The efflux pump inhibitor reserpine selects multidrug-resistant Streptococcus pneumoniae strains that overexpress the ABC transporters PatA and PatB. Antimicrob Agents Chemother 52: 1677-1685.
-
(2008)
Antimicrob Agents Chemother
, vol.52
, pp. 1677-1685
-
-
Garvey, M.I.1
Piddock, L.J.2
-
46
-
-
27644571508
-
Use of an efflux-deficient Streptococcus pneumoniae strain panel to identify ABC-class multidrug transporters involved in intrinsic resistance to antimicrobial agents
-
Robertson GT, Doyle TB, Lynch AS, (2005) Use of an efflux-deficient Streptococcus pneumoniae strain panel to identify ABC-class multidrug transporters involved in intrinsic resistance to antimicrobial agents. Antimicrob Agents Chemother 49: 4781-4783.
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 4781-4783
-
-
Robertson, G.T.1
Doyle, T.B.2
Lynch, A.S.3
-
47
-
-
0034911878
-
Phenotype microarrays for high-throughput phenotypic testing and assay of gene function
-
Bochner BR, Gadzinski P, Panomitros E, (2001) Phenotype microarrays for high-throughput phenotypic testing and assay of gene function. Genome Res 11: 1246-1255.
-
(2001)
Genome Res
, vol.11
, pp. 1246-1255
-
-
Bochner, B.R.1
Gadzinski, P.2
Panomitros, E.3
-
48
-
-
0023665601
-
Single base bulges in small RNA hairpins enhance ethidium binding and promote an allosteric transition
-
White SA, Draper DE, (1987) Single base bulges in small RNA hairpins enhance ethidium binding and promote an allosteric transition. Nuc Acids Res 15: 4049-4064.
-
(1987)
Nuc Acids Res
, vol.15
, pp. 4049-4064
-
-
White, S.A.1
Draper, D.E.2
-
49
-
-
0035919670
-
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
-
Tettelin H, Nelson KE, Paulsen IT, Eisen JA, Read TD, et al. (2001) Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science 293: 498-506.
-
(2001)
Science
, vol.293
, pp. 498-506
-
-
Tettelin, H.1
Nelson, K.E.2
Paulsen, I.T.3
Eisen, J.A.4
Read, T.D.5
-
50
-
-
0025601467
-
Therapeutic failure and selection of resistance to quinolones in a case of pneumococcal pneumonia treated with ciprofloxacin
-
Perez-Trallero E, Garcia-Arenzana JM, Jimenez JA, Peris A, (1990) Therapeutic failure and selection of resistance to quinolones in a case of pneumococcal pneumonia treated with ciprofloxacin. Eur J Clin Microbiol Infect Dis 9: 905-906.
-
(1990)
Eur J Clin Microbiol Infect Dis
, vol.9
, pp. 905-906
-
-
Perez-Trallero, E.1
Garcia-Arenzana, J.M.2
Jimenez, J.A.3
Peris, A.4
-
51
-
-
84863338394
-
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease
-
Young BC, Golubchik T, Batty EM, Fung R, Larner-Svensson H, et al. (2012) Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease. Proc Natl Acad Sci 109: 4550-4555.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 4550-4555
-
-
Young, B.C.1
Golubchik, T.2
Batty, E.M.3
Fung, R.4
Larner-Svensson, H.5
-
52
-
-
84872515273
-
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study
-
Harris SR, Cartwright EJ, Török ME, Holden MT, Brown NM, et al. (2012) Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study. Lancet Infect Dis 13 (2) ():: 130-136.
-
(2012)
Lancet Infect Dis
, vol.13
, Issue.2
, pp. 130-136
-
-
Harris, S.R.1
Cartwright, E.J.2
Török, M.E.3
Holden, M.T.4
Brown, N.M.5
-
53
-
-
84880507204
-
Genomic analysis of Extra-intestinal pathogenic Escherichia coli urosepsis
-
McNally A, Alhashash F, Collins M, Alqasim A, Paszckiewicz K, et al. (2013) Genomic analysis of Extra-intestinal pathogenic Escherichia coli urosepsis. Clin Microbiol Infect 19: E328-34.
-
(2013)
Clin Microbiol Infect
, vol.19
-
-
McNally, A.1
Alhashash, F.2
Collins, M.3
Alqasim, A.4
Paszckiewicz, K.5
-
54
-
-
78149294782
-
Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections
-
Levert M, Zamfir O, Clermont O, Bouvet O, Lespinats S, et al. (2010) Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections. PLoS Pathog 6: e1001125.
-
(2010)
PLoS Pathog
, vol.6
-
-
Levert, M.1
Zamfir, O.2
Clermont, O.3
Bouvet, O.4
Lespinats, S.5
-
55
-
-
0022892964
-
Transformation of encapsulated Streptococcus pneumoniae
-
Yother J, McDaniel LS, Briles DE, (1986) Transformation of encapsulated Streptococcus pneumoniae. J Bacteriol 168: 1463-1465.
-
(1986)
J Bacteriol
, vol.168
, pp. 1463-1465
-
-
Yother, J.1
McDaniel, L.S.2
Briles, D.E.3
-
56
-
-
84872050552
-
Functional Analysis of pneumococcal drug efflux pumps associates the MATE DinF transporter with quinolone susceptibility
-
Tocci N, Iannelli F, Bidossi A, Ciusa ML, Decorosi F, et al. (2013) Functional Analysis of pneumococcal drug efflux pumps associates the MATE DinF transporter with quinolone susceptibility. Antimicrob Agents Chemother 57: 248-253.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 248-253
-
-
Tocci, N.1
Iannelli, F.2
Bidossi, A.3
Ciusa, M.L.4
Decorosi, F.5
-
58
-
-
70349866672
-
Genomics. Genome project standards in a new era of sequencing
-
Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, et al. (2009) Genomics. Genome project standards in a new era of sequencing. Science 326: 236-237.
-
(2009)
Science
, vol.326
, pp. 236-237
-
-
Chain, P.S.1
Grafham, D.V.2
Fulton, R.S.3
Fitzgerald, M.G.4
Hostetler, J.5
-
59
-
-
77950658346
-
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
-
Tsai IJ, Otto TD, Berriman M, (2010) Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome Biol 11: R41.
-
(2010)
Genome Biol
, vol.11
-
-
Tsai, I.J.1
Otto, T.D.2
Berriman, M.3
-
60
-
-
77954523593
-
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
-
Otto TD, Sanders M, Berriman M, Newbold C, (2010) Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology. Bioinformatics 26: 1704-1707.
-
(2010)
Bioinformatics
, vol.26
, pp. 1704-1707
-
-
Otto, T.D.1
Sanders, M.2
Berriman, M.3
Newbold, C.4
-
61
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E, (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
62
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
Delcher AL, Bratke KA, Powers EC, Salzberg SL, (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23: 673-679.
-
(2007)
Bioinformatics
, vol.23
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
63
-
-
56649123520
-
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
-
Carver T, Berriman M, Tivey A, Patel C, Bohme U, et al. (2008) Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 24: 2672-2676.
-
(2008)
Bioinformatics
, vol.24
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Bohme, U.5
-
64
-
-
84864028194
-
A high-resolution view of genome-wide pneumococcal transformation
-
Croucher NJ, Harris SR, Barquist L, Parkhill J, Bentley SD, (2012) A high-resolution view of genome-wide pneumococcal transformation. PLoS Pathog 8: e1002745.
-
(2012)
PLoS Pathog
, vol.8
-
-
Croucher, N.J.1
Harris, S.R.2
Barquist, L.3
Parkhill, J.4
Bentley, S.D.5
-
65
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond AJ, Suchard MA, Xie D, Rambaut A, (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29: 1969-1973.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
67
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
Drummond AJ, Rambaut A, Shapiro B, Pybus OG, (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22: 1185-1192.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1185-1192
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
69
-
-
79551599525
-
Mugsy: fast multiple alignment of closely related whole genomes
-
Angiuoli SV, Salzberg SL, (2011) Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27: 334-342.
-
(2011)
Bioinformatics
, vol.27
, pp. 334-342
-
-
Angiuoli, S.V.1
Salzberg, S.L.2
-
70
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
71
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
72
-
-
1442268877
-
A two-component system that controls the expression of pneumococcal surface antigen A (PsaA) and regulates virulence and resistance to oxidative stress in Streptococcus pneumoniae
-
McCluskey J, Hinds J, Husain S, Witney A, Mitchell T, (2004) A two-component system that controls the expression of pneumococcal surface antigen A (PsaA) and regulates virulence and resistance to oxidative stress in Streptococcus pneumoniae. Mol Microbiol 51: 1661-1675.
-
(2004)
Mol Microbiol
, vol.51
, pp. 1661-1675
-
-
McCluskey, J.1
Hinds, J.2
Husain, S.3
Witney, A.4
Mitchell, T.5
-
73
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Smyth GK, (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
74
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W, (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
75
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker IL, (2003) Vienna RNA secondary structure server. Nucleic Acids Res 31: 3429-3431.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
76
-
-
57649123534
-
Global phenotypic characterization of bacteria
-
Bochner BR, (2009) Global phenotypic characterization of bacteria. FEMS Microbiol Rev 33: 191-205.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 191-205
-
-
Bochner, B.R.1
|