DNA damage triggers genetic exchange in Helicobacter pylori

PLoS Pathogens

Volumn 6, Issue 7, 2010, Pages 1-10

  Dorer, Marion S ^a   Fero, Jutta ^a   Salama, Nina R ^a  

^a Fred Hutchinson Cancer Research Center   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIPROFLOXACIN; RECA PROTEIN;

ALLELE; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GENE; DNA DAMAGE; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; HELICOBACTER PYLORI; NONHUMAN; PROTEIN EXPRESSION; RNA TRANSLATION; STOMACH; GENETIC TRANSFORMATION; GENETICS; HUMAN; PATHOGENICITY;

BACTERIA (MICROORGANISMS); HELICOBACTER PYLORI;

DNA DAMAGE; HELICOBACTER PYLORI; HUMANS; REC A RECOMBINASES; TRANSCRIPTION, GENETIC; TRANSFORMATION, GENETIC;

EID: 77957673732     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1001026     Document Type: Article

References (50)

1. Peek RM, Jr., Blaser MJ (2002) Helicobacter pylori and gastrointestinal tract adenocarcinomas. Nat Rev Cancer 2: 28-37.
2. Chey WD, Wong BC (2007) American College of Gastroenterology guideline on the management of Helicobacter pylori infection. Am J Gastroenterol 102: 1808-1825.
3. Graham DY (2009) Efficient identification and evaluation of effective Helicobacter pylori therapies. Clin Gastroenterol Hepatol 7: 145-148.
4. Suerbaum S, Smith JM, Bapumia K, Morelli G, Smith NH, et al. (1998) Free recombination within Helicobacter pylori. Proc Natl Acad Sci U S A 95: 12619-12624.
5. Alm RA, Ling LS, Moir DT, King BL, Brown ED, et al. (1999) Genomicsequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397: 176-180.
6. Gressmann H, Linz B, Ghai R, Pleissner KP, Schlapbach R, et al. (2005) Gain and loss of multiple genes during the evolution of Helicobacter pylori. PLoS Genet 1: e43.
7. Salama N, Guillemin K, McDaniel TK, Sherlock G, Tompkins L, et al. (2000) A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains. Proc Natl Acad Sci U S A 97: 14668-14673.
8. Baltrus DA, Guillemin K, Phillips PC (2008) Natural transformation increases the rate of adaptation in the human pathogen Helicobacter pylori. Evolution 62: 39-49.
9. Luria SE, Delbruck M (1943) Mutations of Bacteria from Virus Sensitivity to Virus Resistance. Genetics 28: 491-511.
10. Björkholm B, Sjolund M, Falk PG, Berg OG, Engstrand L, et al. (2001) Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori. Proc Natl Acad Sci U S A 98: 14607-14612.
11. Kang JM, Iovine NM, Blaser MJ (2006) A paradigm for direct stress-induced mutation in prokaryotes. FASEB J 20: 2476-2485.
12. Taylor NS, Fox JG, Akopyants NS, Berg DE, Thompson N, et al. (1995) Longterm colonization with single and multiple strains of Helicobacter pylori assessed by DNA fingerprinting. J Clin Microbiol 33: 918-923.
13. Berg DE, Gilman RH, Lelwala-Guruge J, Srivastava K, Valdez Y, et al. (1997) Helicobacter pylori populations in Peruvian patients. Clin Infect Dis 25: 996-1002.
14. Schwarz S, Morelli G, Kusecek B, Manica A, Balloux F, et al. (2008) Horizontal versus familial transmission of Helicobacter pylori. PLoS Pathog 4: e1000180.
15. Salama NR, Gonzalez-Valencia G, Deatherage B, Aviles-Jimenez F, Atherton JC, et al. (2007) Genetic analysis of Helicobacter pylori strain populations colonizing the stomach at different times postinfection. J Bacteriol 189: 3834-3845.
16. Talarico S, Gold BD, Fero J, Thompson DT, Guarner J, et al. (2009) Pediatric Helicobacter pylori isolates display distinct gene coding capacities and virulence gene marker profiles. J Clin Microbiol In Press.
17. Israel DA, Salama N, Krishna U, Rieger UM, Atherton JC, et al. (2001) Helicobacter pylori genetic diversity within the gastric niche of a single human host. Proc Natl Acad Sci U S A 98: 14625-14630.
18. Yeh YC, Chang KC, Yang JC, Fang CT, Wang JT (2002) Association of metronidazole resistance and natural competence in Helicobacter pylori. Antimicrob Agents Chemother 46: 1564-1567.
19. Hofreuter D, Odenbreit S, Haas R (2001) Natural transformation competence in Helicobacter pylori is mediated by the basic components of a type IV secretion system. Mol Microbiol 41: 379-391.
20. Alvarez-Martinez CE, Christie PJ (2009) Biological diversity of prokaryotic type IV secretion systems. Microbiol Mol Biol Rev 73: 775-808.
21. Baltrus DA, Guillemin K (2006) Multiple phases of competence occur during the Helicobacter pylori growth cycle. FEMS Microbiol Lett 255: 148-155.
22. Amundsen SK, Fero J, Hansen LM, Cromie GA, Solnick JV, et al. (2008) Helicobacter pylori AddAB helicase-nuclease and RecA promote recombinationrelated DNA repair and survival during stomach colonization. Mol Microbiol 69: 994-1007.
23. Amundsen SK, Fero J, Salama NR, Smith GR (2009) Dual Nuclease and Helicase Activities of Helicobacter pylori AddAB Are Required for DNA Repair, Recombination, and Mouse Infectivity. J Biol Chem 284: 16759-16766.
24. Galhardo RS, Hastings PJ, Rosenberg SM (2007) Mutation as a stress response and the regulation of evolvability. Crit Rev Biochem Mol Biol 42: 399-435.
25. Cirz RT, Jones MB, Gingles NA, Minogue TD, Jarrahi B, et al. (2007) Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin. J Bacteriol 189: 531-539.
26. Cirz RT, O'Neill BM, Hammond JA, Head SR, Romesberg FE (2006) Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. J Bacteriol 188: 7101-7110.
27. Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori [see comments] [published erratum appears in Nature 1997 Sep 25;389(6649):412]. Nature 388: 539-547.
28. Han J, Sahin O, Barton YW, Zhang Q (2008) Key role of Mfd in the development of fluoroquinolone resistance in Campylobacter jejuni. PLoS Pathog 4: e1000083.
29. Prudhomme M, Attaiech L, Sanchez G, Martin B, Claverys JP (2006) Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae. Science 313: 89-92.
30. Moore RA, Beckthold B, Wong S, Kureishi A, Bryan LE (1995) Nucleotide sequence of the gyrA gene and characterization of ciprofloxacin-resistant mutants of Helicobacter pylori. Antimicrob Agents Chemother 39: 107-111.
31. Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 98: 5116-5121.
32. Marsin S, Mathieu A, Kortulewski T, Guerois R, Radicella JP (2008) Unveiling novel RecO distant orthologues involved in homologous recombination. PLoS Genet 4: e1000146.
33. Miyagishima SY, Wolk CP, Osteryoung KW (2005) Identification of cyanobacterial cell division genes by comparative and mutational analyses. Mol Microbiol 56: 126-143.
34. Perez JC, Groisman EA (2009) Evolution of transcriptional regulatory circuits in bacteria. Cell 138: 233-244.
35. da Rocha RP, Paquola AC, Marques Mdo V, Menck CF, Galhardo RS (2008) Characterization of the SOS regulon of Caulobacter crescentus. J Bacteriol 190: 1209-1218.
36. Karnholz A, Hoefler C, Odenbreit S, Fischer W, Hofreuter D, et al. (2006) Functional and topological characterization of novel components of the comB DNA transformation competence system in Helicobacter pylori. J Bacteriol 188: 882-893.
37. Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, et al. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464: 250-255.
38. Claverys JP, Prudhomme M, Martin B (2006) Induction of competence regulons as a general response to stress in gram-positive bacteria. Annu Rev Microbiol 60: 451-475.
39. Kang J, Huang S, Blaser MJ (2005) Structural and functional divergence of MutS2 from bacterial MutS1 and eukaryotic MSH4-MSH5 homologs. J Bacteriol 187: 3528-3537.
40. Marsich E, Zuccato P, Rizzi S, Vetere A, Tonin E, et al. (2002) Helicobacter pylori expresses an autolytic enzyme: gene identification, cloning, and theoretical protein structure. J Bacteriol 184: 6270-6279.
41. Salama NR, Otto G, Tompkins L, Falkow S (2001) Vacuolating cytotoxin of Helicobacter pylori plays a role during colonization in a mouse model of infection. Infect Immun 69: 730-736.
42. Jazayeri A, Balestrini A, Garner E, Haber JE, Costanzo V (2008) Mre11-Rad50-Nbs1-dependent processing of DNA breaks generates oligonucleotides that stimulate ATM activity. EMBO J 27: 1953-1962.
43. Baldwin DN, Shepherd B, Kraemer P, Hall MK, Sycuro LK, et al. (2007) Identification of Helicobacter pylori genes that contribute to stomach colonization. Infect Immun 75: 1005-1016.
44. Merrell DS, Thompson LJ, Kim CC, Mitchell H, Tompkins LS, et al. (2003) Growth phase-dependent response of Helicobacter pylori to iron starvation. Infect Immun 71: 6510-6525.
45. Thompson LJ, Merrell DS, Neilan BA, Mitchell H, Lee A, et al. (2003) Gene expression profiling of Helicobacter pylori reveals a growth-phase-dependent switch in virulence gene expression. Infect Immun 71: 2643-2655.
46. Baltrus DA, Amieva MR, Covacci A, Lowe TM, Merrell DS, et al. (2008) The Complete Genome Sequence of Helicobacter pylori strain G27. J Bacteriol.
47. Hahne F, Huber W, Gentleman R, Falcon S (2008) Bioconductor Case Studies: Springer Verlag.
48. Langford ML, Zabaleta J, Ochoa AC, Testerman TL, McGee DJ (2006) In vitro and in vivo complementation of the Helicobacter pylori arginase mutant using an intergenic chromosomal site. Helicobacter 11: 477-493.
49. Rosche WA, Foster PL (2000) Determining mutation rates in bacterial populations. Methods 20: 4-17.
50. Hachem CY, Clarridge JE, Reddy R, Flamm R, Evans DG, et al. (1996) Antimicrobial susceptibility testing of Helicobacter pylori. Comparison of E-test, broth microdilution, and disk diffusion for ampicillin, clarithromycin, and metronidazole. Diagn Microbiol Infect Dis 24: 37-41.