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Volumn 7, Issue FEB, 2016, Pages

Metagenomic insights into the uncultured diversity and physiology of microbes in four hypersaline soda lake brines

Author keywords

Bacteroidetes; Cellulase; Chitinase; Halobacteria; Hydrolytics; Nanohaloarchaea; Rhodopsin; Soda lake brines

Indexed keywords

RNA 16S;

EID: 84962090377     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.00211     Document Type: Article
Times cited : (140)

References (121)
  • 1
    • 84879678051 scopus 로고    scopus 로고
    • Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
    • Albertsen, M., Hugenholtz, P., Skarshewski, A., Nielsen, K. L., Tyson, G. W., and Nielsen, P. H. (2013). Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat. Biotechnol. 31, 533-538. doi: 10.1038/nbt.2579
    • (2013) Nat. Biotechnol , vol.31 , pp. 533-538
    • Albertsen, M.1    Hugenholtz, P.2    Skarshewski, A.3    Nielsen, K.L.4    Tyson, G.W.5    Nielsen, P.H.6
  • 3
    • 84947611395 scopus 로고    scopus 로고
    • Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem
    • Andrade, K., Logemann, J., Heidelberg, K. B., Emerson, J. B., Comolli, L. R., Hug, L. A., et al. (2015). Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. ISME J. 9, 2697-2711. doi: 10.1038/ismej.2015.66
    • (2015) ISME J , vol.9 , pp. 2697-2711
    • Andrade, K.1    Logemann, J.2    Heidelberg, K.B.3    Emerson, J.B.4    Comolli, L.R.5    Hug, L.A.6
  • 4
    • 0036200510 scopus 로고    scopus 로고
    • Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the bacteria from saltern crystallizer ponds
    • Antón, J., Oren, A., Benlloch, S., Rodríguez-Valera, F., Amann, R., and Rosselló-Mora, R. (2002). Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the bacteria from saltern crystallizer ponds. Int. J. Syst. Evol. Microbiol. 52, 485-491. doi: 10.1099/00207713-52-2-485
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 485-491
    • Antón, J.1    Oren, A.2    Benlloch, S.3    Rodríguez-Valera, F.4    Amann, R.5    Rosselló-Mora, R.6
  • 5
    • 0033916431 scopus 로고    scopus 로고
    • Extremely halophilic bacteria in crystallizer ponds from solar salterns
    • Antón, J., Rosselló-Mora, R., Rodríguez-Valera, F., and Amann, R. (2000). Extremely halophilic bacteria in crystallizer ponds from solar salterns. Appl. Environ. Microbiol. 66, 3052-3057. doi: 10.1128/AEM.66.7.3052-3057.2000
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3052-3057
    • Antón, J.1    Rosselló-Mora, R.2    Rodríguez-Valera, F.3    Amann, R.4
  • 6
    • 80051936472 scopus 로고    scopus 로고
    • Diversity of extremophilic purple phototrophic bacteria in soap lake, a central washington (USA) soda lake
    • Asao, M., Pinkart, H. C., and Madigan, M. T. (2011). Diversity of extremophilic purple phototrophic bacteria in soap lake, a central washington (USA) soda lake. Environ. Microbiol. 13, 2146-2157. doi: 10.1111/j.1462-2920.2011.02449.x
    • (2011) Environ. Microbiol , vol.13 , pp. 2146-2157
    • Asao, M.1    Pinkart, H.C.2    Madigan, M.T.3
  • 7
    • 80053957236 scopus 로고    scopus 로고
    • Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes
    • Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., and Mandic-Mulec, I. (2011). Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 6:e25724. doi: 10.1371/journal.pone.0025724
    • (2011) PLoS ONE , vol.6
    • Ausec, L.1    Zakrzewski, M.2    Goesmann, A.3    Schlüter, A.4    Mandic-Mulec, I.5
  • 8
    • 84920499562 scopus 로고    scopus 로고
    • 'Adaptation in Haloalkaliphiles and Natronophilic bacteria, '
    • eds J. Seckbach, A. Oren, and H. Stan-Lotter (Dordrecht: Springer)
    • Banciu, H. L., and Sorokin, D. Y. (2013). "Adaptation in Haloalkaliphiles and Natronophilic bacteria, "in Polyextremophiles, eds J. Seckbach, A. Oren, and H. Stan-Lotter (Dordrecht: Springer), 121-178
    • (2013) Polyextremophiles , pp. 121-178
    • Banciu, H.L.1    Sorokin, D.Y.2
  • 10
    • 33750907710 scopus 로고    scopus 로고
    • Whole genome analysis of the marine Bacteroidetes 'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter
    • Bauer, M., Kube, M., Teeling, H., Richter, M., Lombardot, T., Allers, E., et al. (2006). Whole genome analysis of the marine Bacteroidetes 'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. Environ. Microbiol. 8, 2201-2213. doi: 10.1111/j.1462-2920.2006.01152.x
    • (2006) Environ. Microbiol , vol.8 , pp. 2201-2213
    • Bauer, M.1    Kube, M.2    Teeling, H.3    Richter, M.4    Lombardot, T.5    Allers, E.6
  • 11
  • 12
    • 0035984127 scopus 로고    scopus 로고
    • Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern
    • Benlloch, S., López-López, A., Casamayor, E. O., Øvreås, L., Goddard, V., Daae, F. L., et al. (2002). Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern. Environ. Microbiol. 4, 349-360. doi: 10.1046/j.1462-2920.2002.00306.x
    • (2002) Environ. Microbiol , vol.4 , pp. 349-360
    • Benlloch, S.1    López-López, A.2    Casamayor, E.O.3    Øvreås, L.4    Goddard, V.5    Daae, F.L.6
  • 13
    • 47549113279 scopus 로고    scopus 로고
    • Rhodobaca barguzinensis sp. nov., a new alkaliphilic purple nonsulfur bacterium isolated from a soda lake of the Barguzin Valley (Buryat Republic, Eastern Siberia)
    • Boldareva, E. N., Akimov, V. N., Boychenko, V. A., Stadnichuk, I. N., Moskalenko, A. A., Makhneva, Z. K., et al. (2008). Rhodobaca barguzinensis sp. nov., a new alkaliphilic purple nonsulfur bacterium isolated from a soda lake of the Barguzin Valley (Buryat Republic, Eastern Siberia). Microbiology 77, 206-218. doi: 10.1134/S0026261708020148
    • (2008) Microbiology , vol.77 , pp. 206-218
    • Boldareva, E.N.1    Akimov, V.N.2    Boychenko, V.A.3    Stadnichuk, I.N.4    Moskalenko, A.A.5    Makhneva, Z.K.6
  • 14
    • 33847674938 scopus 로고    scopus 로고
    • The new alkaliphilic bacteriochlorophyll a-containing bacterium Roseinatronobacter monicus sp. nov. from the hypersaline Soda Mono Lake (California, United States)
    • Boldareva, E. N., Bryantseva, I. A., Tsapin, A., Nelson, K., Sorokin, D. Y., Tourova, T. P., et al. (2007). The new alkaliphilic bacteriochlorophyll a-containing bacterium Roseinatronobacter monicus sp. nov. from the hypersaline Soda Mono Lake (California, United States). Microbiology 76, 82-92. doi: 10.1134/S0026261707010122
    • (2007) Microbiology , vol.76 , pp. 82-92
    • Boldareva, E.N.1    Bryantseva, I.A.2    Tsapin, A.3    Nelson, K.4    Sorokin, D.Y.5    Tourova, T.P.6
  • 15
    • 0031777276 scopus 로고    scopus 로고
    • Psychroflexus torquis ge. nov., sp. nov. a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al., 1993) as Psychroflexus gondwanense gen. nov., comb. nov
    • Bowman, J. P., McCammon, S. A., Lewis, T., Skerratt, J. H., Brown, J. L., Nichols, D. S., et al. (1998). Psychroflexus torquis gen. nov., sp. nov. a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al., 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144, 1601-1609. doi: 10.1099/00221287-144-6-1601
    • (1998) Microbiology , vol.144 , pp. 1601-1609
    • Bowman, J.P.1    McCammon, S.A.2    Lewis, T.3    Skerratt, J.H.4    Brown, J.L.5    Nichols, D.S.6
  • 16
    • 9144223171 scopus 로고    scopus 로고
    • Nitrate reduction and the nitrogen cycle in Archaea
    • Cabello, P., Roldán, M. D., and Moreno-Vivián, C. (2004). Nitrate reduction and the nitrogen cycle in Archaea. Microbiology 150, 3527-3546. doi: 10.1099/mic.0.27303-0
    • (2004) Microbiology , vol.150 , pp. 3527-3546
    • Cabello, P.1    Roldán, M.D.2    Moreno-Vivián, C.3
  • 17
    • 0033705961 scopus 로고    scopus 로고
    • 5S rRNA fingerprints of marine Bacteria, halophilic Archaea and natural prokaryotic assemblages along a salinity gradient
    • Casamayor, E. O., Calderón-Paz, J. I., and Pedrós-Alió, C. (2000). 5S rRNA fingerprints of marine Bacteria, halophilic Archaea and natural prokaryotic assemblages along a salinity gradient. FEMS Microbiol. Ecol. 34, 113-119. doi: 10.1111/j.1574-6941.2000.tb00760.x
    • (2000) FEMS Microbiol. Ecol , vol.34 , pp. 113-119
    • Casamayor, E.O.1    Calderón-Paz, J.I.2    Pedrós-Alió, C.3
  • 18
    • 0035984122 scopus 로고    scopus 로고
    • Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern
    • Casamayor, E. O., Massana, R., Benlloch, S., Øvreås, L., Díez, B., Goddard, V. J., et al. (2002). Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ. Microbiol. 4, 338-348. doi: 10.1046/j.1462-2920.2002.00297.x
    • (2002) Environ. Microbiol , vol.4 , pp. 338-348
    • Casamayor, E.O.1    Massana, R.2    Benlloch, S.3    Øvreås, L.4    Díez, B.5    Goddard, V.J.6
  • 19
    • 84926417610 scopus 로고    scopus 로고
    • Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling
    • Castelle, C. J., Wrighton, K. C., Thomas, B. C., Hug, L. A., Brown, C. T., Wilkins, M. J., et al. (2015). Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. Curr. Biol. 25, 690-701. doi: 10.1016/j.cub.2015.01.014
    • (2015) Curr. Biol , vol.25 , pp. 690-701
    • Castelle, C.J.1    Wrighton, K.C.2    Thomas, B.C.3    Hug, L.A.4    Brown, C.T.5    Wilkins, M.J.6
  • 20
    • 84887083055 scopus 로고    scopus 로고
    • Gracilimonas rosea sp. nov., isolated from tropical seawater, and emended description of the genus Gracilimonas
    • Cho, Y., Chung, H., Jang, G. I., Choi, D. H., Noh, J. H., and Cho, B. C. (2013). Gracilimonas rosea sp. nov., isolated from tropical seawater, and emended description of the genus Gracilimonas. Int. J. Syst. Evol. Microbiol. 63, 4006-4011. doi: 10.1099/ijs.0.052340-0
    • (2013) Int. J. Syst. Evol. Microbiol , vol.63 , pp. 4006-4011
    • Cho, Y.1    Chung, H.2    Jang, G.I.3    Choi, D.H.4    Noh, J.H.5    Cho, B.C.6
  • 21
    • 67649744171 scopus 로고    scopus 로고
    • Gracilimonas tropica gen. nov., sp. nov., isolated from a Synechococcus culture
    • Choi, D. H., Zhang, G. I., Noh, J. H., Kim, W. S., and Cho, B. C. (2009). Gracilimonas tropica gen. nov., sp. nov., isolated from a Synechococcus culture. Int. J. Syst. Evol. Microbiol. 59, 1167-1172. doi: 10.1099/ijs.0.005512-0
    • (2009) Int. J. Syst. Evol. Microbiol , vol.59 , pp. 1167-1172
    • Choi, D.H.1    Zhang, G.I.2    Noh, J.H.3    Kim, W.S.4    Cho, B.C.5
  • 22
    • 84891787231 scopus 로고    scopus 로고
    • Ribosomal database project: data and tools for high throughput rRNA analysis
    • (Database issue)
    • Cole, J. R., Wang, Q., Fish, J. A., Chai, B., McGarrell, D. M., Sun, Y., et al. (2014). Ribosomal database project: data and tools for high throughput rRNA analysis. Nucleic Acids Res. 41(Database issue):gkt1244. doi: 10.1093/nar/gkt1244
    • (2014) Nucleic Acids Res , vol.41
    • Cole, J.R.1    Wang, Q.2    Fish, J.A.3    Chai, B.4    McGarrell, D.M.5    Sun, Y.6
  • 23
    • 77957151956 scopus 로고    scopus 로고
    • SolexaQA: at-a-glance quality assessment of Illumina second-generation sequencing data
    • Cox, M. P., Peterson, D. A., and Biggs, P. J. (2010). SolexaQA: at-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics 11:485. doi: 10.1186/1471-2105-11-485
    • (2010) BMC Bioinformatics , vol.11 , pp. 485
    • Cox, M.P.1    Peterson, D.A.2    Biggs, P.J.3
  • 24
    • 79953029156 scopus 로고    scopus 로고
    • Correlating carbon monoxide oxidation with cox genes in the abundant marine Roseobacter clade
    • Cunliffe, M. (2011). Correlating carbon monoxide oxidation with cox genes in the abundant marine Roseobacter clade. ISME J. 5, 685-691. doi: 10.1038/ismej.2010.170
    • (2011) ISME J , vol.5 , pp. 685-691
    • Cunliffe, M.1
  • 26
    • 84892169240 scopus 로고    scopus 로고
    • Patterns of microbial diversity along a salinity gradient in the Guerrero Negro solar saltern, Baja CA Sur, Mexico
    • Dillon, J. G., Carlin, M., Gutierrez, A., Nguyen, V., and McLain, N. (2013). Patterns of microbial diversity along a salinity gradient in the Guerrero Negro solar saltern, Baja CA Sur, Mexico. Front. Microbiol. 4:399. doi: 10.3389/fmicb.2013.00399
    • (2013) Front. Microbiol , vol.4 , pp. 399
    • Dillon, J.G.1    Carlin, M.2    Gutierrez, A.3    Nguyen, V.4    McLain, N.5
  • 27
    • 49449100545 scopus 로고    scopus 로고
    • Spatial and temporal patterns in the microbial diversity of a meromictic soda lake in washington state
    • Dimitriu, P. A., Pinkart, H. C., Peyton, B. M., and Mormile, M. R. (2008). Spatial and temporal patterns in the microbial diversity of a meromictic soda lake in washington state. Appl. Environ. Microbiol. 74, 4877-4888. doi: 10.1128/AEM.00455-08
    • (2008) Appl. Environ. Microbiol , vol.74 , pp. 4877-4888
    • Dimitriu, P.A.1    Pinkart, H.C.2    Peyton, B.M.3    Mormile, M.R.4
  • 28
    • 0035902973 scopus 로고    scopus 로고
    • Crystal structure of a carbon monoxide dehydrogenase reveals a [Ni-4Fe-5S] cluster
    • Dobbek, H., Svetlitchnyi, V., Gremer, L., Huber, R., and Meyer, O. (2001). Crystal structure of a carbon monoxide dehydrogenase reveals a [Ni-4Fe-5S] cluster. Science 293, 1281-128510. doi: 10.1126/science.1061500
    • (2001) Science , vol.293 , pp. 1281-128510
    • Dobbek, H.1    Svetlitchnyi, V.2    Gremer, L.3    Huber, R.4    Meyer, O.5
  • 29
    • 2942637816 scopus 로고    scopus 로고
    • Psychroflexus tropicus sp. nov., an obligately halophilic Cytophaga-Flavobacterium-Bacteroides group bacterium from an Hawaiian hypersaline lake
    • Donachie, S. P., Bowman, J. P., and Alam, M. (2004). Psychroflexus tropicus sp. nov., an obligately halophilic Cytophaga-Flavobacterium-Bacteroides group bacterium from an Hawaiian hypersaline lake. Int. J. Syst. Evol. Microbiol. 54, 935-940. doi: 10.1099/ijs.0.02733-0
    • (2004) Int. J. Syst. Evol. Microbiol , vol.54 , pp. 935-940
    • Donachie, S.P.1    Bowman, J.P.2    Alam, M.3
  • 30
    • 84901688745 scopus 로고    scopus 로고
    • Prokaryotic taxonomic and metabolic diversity of an intermediate salinity hypersaline habitat assessed by metagenomics
    • Fernández, A. B., Ghai, R., Martin-Cuadrado, A., Sánchez-Porro, C., Rodriguez-Valera, F., and Ventosa, A. (2014a). Prokaryotic taxonomic and metabolic diversity of an intermediate salinity hypersaline habitat assessed by metagenomics. FEMS Microbiol. Ecol. 88, 623-635. doi: 10.1111/1574-6941.12329
    • (2014) FEMS Microbiol. Ecol , vol.88 , pp. 623-635
    • Fernández, A.B.1    Ghai, R.2    Martin-Cuadrado, A.3    Sánchez-Porro, C.4    Rodriguez-Valera, F.5    Ventosa, A.6
  • 31
    • 84905113877 scopus 로고    scopus 로고
    • Comparison of prokaryotic community structure from Mediterranean and Atlantic saltern concentrator ponds by a metagenomic approach
    • Fernández, A. B., Vera-Gargallo, B., Sánchez-Porro, C., Ghai, R., Papke, R. T., Rodriguez-Valera, F., et al. (2014b). Comparison of prokaryotic community structure from Mediterranean and Atlantic saltern concentrator ponds by a metagenomic approach. Front. Microbiol. 5:196. doi: 10.3389/fmicb.2014.00196
    • (2014) Front. Microbiol , vol.5 , pp. 196
    • Fernández, A.B.1    Vera-Gargallo, B.2    Sánchez-Porro, C.3    Ghai, R.4    Papke, R.T.5    Rodriguez-Valera, F.6
  • 32
    • 38049093437 scopus 로고    scopus 로고
    • Bacterial diversity and activity along a salinity gradient in soda lakes of the Kulunda Steppe (Altai, Russia)
    • Foti, M. J., Sorokin, D. Y., Zacharova, E. E., Pimenov, N. V., Kuenen, J. G., and Muyzer, G. (2008). Bacterial diversity and activity along a salinity gradient in soda lakes of the Kulunda Steppe (Altai, Russia). Extremophiles 12, 133-145. doi: 10.1007/s00792-007-0117-7
    • (2008) Extremophiles , vol.12 , pp. 133-145
    • Foti, M.J.1    Sorokin, D.Y.2    Zacharova, E.E.3    Pimenov, N.V.4    Kuenen, J.G.5    Muyzer, G.6
  • 33
    • 59649123898 scopus 로고    scopus 로고
    • Assessment of alkaliphilic haloarchaeal diversity in Sua pan evaporator ponds in Botswana
    • Gareeb, A. P., and Setati, M. E. (2009). Assessment of alkaliphilic haloarchaeal diversity in Sua pan evaporator ponds in Botswana. Afr. J. Biotechnol. 8, 259-267. doi: 10.5897/AJB2009.000-9046
    • (2009) Afr. J. Biotechnol , vol.8 , pp. 259-267
    • Gareeb, A.P.1    Setati, M.E.2
  • 35
    • 0346034961 scopus 로고    scopus 로고
    • A novel binuclear [CuSMo] cluster at the active site of carbon monoxide dehydrogenase: characterization by X-ray absorption spectroscopy
    • Gnida, M., Ferner, R., Gremer, L., Meyer, O., and Meyer-Klaucke, W. (2003). A novel binuclear [CuSMo] cluster at the active site of carbon monoxide dehydrogenase: characterization by X-ray absorption spectroscopy. Biochemistry 42, 222-230. doi: 10.1021/bi026514n
    • (2003) Biochemistry , vol.42 , pp. 222-230
    • Gnida, M.1    Ferner, R.2    Gremer, L.3    Meyer, O.4    Meyer-Klaucke, W.5
  • 37
    • 0033136102 scopus 로고    scopus 로고
    • Novel archaeal phylotypes from an East African alkaline saltern
    • Grant, S., Grant, W. D., Jones, B. E., Kato, C., and Li, L. (1999). Novel archaeal phylotypes from an East African alkaline saltern. Extremophiles 3, 139-145. doi: 10.1007/s007920050109
    • (1999) Extremophiles , vol.3 , pp. 139-145
    • Grant, S.1    Grant, W.D.2    Jones, B.E.3    Kato, C.4    Li, L.5
  • 38
    • 4344573472 scopus 로고    scopus 로고
    • Life at low water activity
    • Grant, W. D. (2004). Life at low water activity. Philos. Trans. R. Soc. B Biol. Sci. 359, 1249-1267. doi: 10.1098/rstb.2004.1502
    • (2004) Philos. Trans. R. Soc. B Biol. Sci , vol.359 , pp. 1249-1267
    • Grant, W.D.1
  • 39
    • 84925321451 scopus 로고    scopus 로고
    • Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov
    • Gupta, R. S., Naushad, S., and Baker, S. (2014). Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov. Int. J. Syst. Evol. Microbiol. 65, 1050-1069. doi: 10.1099/ijs.0.070136-0
    • (2014) Int. J. Syst. Evol. Microbiol , vol.65 , pp. 1050-1069
    • Gupta, R.S.1    Naushad, S.2    Baker, S.3
  • 40
    • 0035175673 scopus 로고    scopus 로고
    • TIGRFAMs: a protein family resource for the functional identification of proteins
    • Haft, D. H., Loftus, B. J., Richardson, D. L., Yang, F., Eisen, J. A., Paulsen, I. T., et al. (2001). TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Res. 29, 41-43. doi: 10.1093/nar/29.1.41
    • (2001) Nucleic Acids Res , vol.29 , pp. 41-43
    • Haft, D.H.1    Loftus, B.J.2    Richardson, D.L.3    Yang, F.4    Eisen, J.A.5    Paulsen, I.T.6
  • 41
    • 20044383778 scopus 로고    scopus 로고
    • Purification and characterization of the tungsten enzyme aldehyde: ferredoxin oxidoreductase from the hyperthermophilic denitrifier Pyrobaculum aerophilum
    • Hagedoorn, P. L., Chen, T., Schröder, I., Piersma, S. R., de Vries, S., and Hagen, W. R. (2005). Purification and characterization of the tungsten enzyme aldehyde: ferredoxin oxidoreductase from the hyperthermophilic denitrifier Pyrobaculum aerophilum. J. Biol. Inorg. Chem. 10, 259-269. doi: 10.1007/s00775-005-0637-5
    • (2005) J. Biol. Inorg. Chem , vol.10 , pp. 259-269
    • Hagedoorn, P.L.1    Chen, T.2    Schröder, I.3    Piersma, S.R.4    de Vries, S.5    Hagen, W.R.6
  • 42
    • 65549160988 scopus 로고    scopus 로고
    • Identification of ribosomal RNA genes in metagenomic fragments
    • Huang, Y., Gilna, P., and Li, W. (2009). Identification of ribosomal RNA genes in metagenomic fragments. Bioinformatics 25, 1338-1340. doi: 10.1093/bioinformatics/btp161
    • (2009) Bioinformatics , vol.25 , pp. 1338-1340
    • Huang, Y.1    Gilna, P.2    Li, W.3
  • 43
    • 33846109956 scopus 로고    scopus 로고
    • 2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: evidence for two ways of citrate cleavage
    • 2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: evidence for two ways of citrate cleavage. Environ. Microbiol. 9, 81-92. doi: 10.1111/j.1462-2920.2006.01118.x
    • (2007) Environ. Microbiol , vol.9 , pp. 81-92
    • Hügler, M.1    Huber, H.2    Molyneaux, S.J.3    Vetriani, C.4    Sievert, S.M.5
  • 44
    • 0037315929 scopus 로고    scopus 로고
    • Depth distribution of microbial diversity in mono lake, a meromictic soda lake in California
    • Humayoun, S. B., Bano, N., and Hollibaugh, J. T. (2003). Depth distribution of microbial diversity in mono lake, a meromictic soda lake in California. Appl. Environ. Microbiol. 69, 1030-1042. doi: 10.1128/AEM.69.2.1030-1042.2003
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 1030-1042
    • Humayoun, S.B.1    Bano, N.2    Hollibaugh, J.T.3
  • 45
    • 77952299957 scopus 로고    scopus 로고
    • Prodigal: prokaryotic gene recognition and translation initiation site identification
    • Hyatt, D., Chen, G. L., LoCascio, P. F., Land, M. L., Larimer, F. W., and Hauser, L. J. (2010). Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. doi: 10.1186/1471-2105-11-119
    • (2010) BMC Bioinformatics , vol.11 , pp. 119
    • Hyatt, D.1    Chen, G.L.2    LoCascio, P.F.3    Land, M.L.4    Larimer, F.W.5    Hauser, L.J.6
  • 46
    • 0002558837 scopus 로고
    • 'Taxonomy and physiology of phototrophic purple bacteria and green sulfur bacteria, '
    • eds R. E. Blankenship, M. T. Madigan and C. E. Bauer (Dordrecht: Springer)
    • Imhoff, J. F. (1995). "Taxonomy and physiology of phototrophic purple bacteria and green sulfur bacteria, "in Anoxygenic Photosynthetic Bacteria, eds R. E. Blankenship, M. T. Madigan and C. E. Bauer (Dordrecht: Springer), 1-15
    • (1995) Anoxygenic Photosynthetic Bacteria , pp. 1-15
    • Imhoff, J.F.1
  • 48
    • 0005444127 scopus 로고
    • "Chloride, sulfate and soda lakes of the Kulunda steppe and the biogenic process in them, "
    • (Leningrad: Academy of Sciences USSR)
    • Isachenko, B. L. (1951). "Chloride, sulfate and soda lakes of the Kulunda steppe and the biogenic process in them, "in Selected Works, Vol. 2 (Leningrad: Academy of Sciences USSR), 143-162
    • (1951) Selected Works , vol.2 , pp. 143-162
    • Isachenko, B.L.1
  • 49
    • 0035106495 scopus 로고    scopus 로고
    • Different glycolytic pathways for glucose and fructose in the halophilic archaeon Halococcus saccharolyticus
    • Johnsen, U., Selig, M., Xavier, K. B., Santos, H., and Schönheit, P. (2001). Different glycolytic pathways for glucose and fructose in the halophilic archaeon Halococcus saccharolyticus. Arch. Microbiol. 175, 52-61. doi: 10.1007/s002030000237
    • (2001) Arch. Microbiol , vol.175 , pp. 52-61
    • Johnsen, U.1    Selig, M.2    Xavier, K.B.3    Santos, H.4    Schönheit, P.5
  • 50
    • 0000609148 scopus 로고
    • Hydrochemistry of the Lake Magadi basin, Kenya
    • Jones, B. F., Eugster, H. P., and Rettig, S. L. (1977). Hydrochemistry of the Lake Magadi basin, Kenya. Geochim. Cosmochim. Acta 41, 53-72. doi: 10.1016/0016-7037(77)90186-7
    • (1977) Geochim. Cosmochim. Acta , vol.41 , pp. 53-72
    • Jones, B.F.1    Eugster, H.P.2    Rettig, S.L.3
  • 51
    • 84872967050 scopus 로고    scopus 로고
    • The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink
    • Jones, C. M., Graf, D. R., Bru, D., Philippot, L., and Hallin, S. (2013). The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink. ISME J. 7, 417-426. doi: 10.1038/ismej.2012.125
    • (2013) ISME J , vol.7 , pp. 417-426
    • Jones, C.M.1    Graf, D.R.2    Bru, D.3    Philippot, L.4    Hallin, S.5
  • 53
    • 84878065011 scopus 로고    scopus 로고
    • Bacterial community structure in a semi-arid haloalkaline soil using culture independent method
    • Keshri, J., Mody, K., and Jha, B. (2013). Bacterial community structure in a semi-arid haloalkaline soil using culture independent method. Geomicrobiol. J. 30, 517-529. doi: 10.1080/01490451.2012.737092
    • (2013) Geomicrobiol. J , vol.30 , pp. 517-529
    • Keshri, J.1    Mody, K.2    Jha, B.3
  • 55
    • 84928910791 scopus 로고    scopus 로고
    • Carbon monoxide as a metabolic energy source for extremely halophilic microbes: implications for microbial activity in Mars regolith
    • King, G. M. (2015). Carbon monoxide as a metabolic energy source for extremely halophilic microbes: implications for microbial activity in Mars regolith. Proc. Natl. Acad. Sci. U.S.A. 112, 4465-4470. doi: 10.1073/pnas.1424989112
    • (2015) Proc. Natl. Acad. Sci. U.S.A , vol.112 , pp. 4465-4470
    • King, G.M.1
  • 56
    • 33846476676 scopus 로고    scopus 로고
    • Distribution, diversity and ecology of aerobic CO-oxidizing bacteria
    • King, G. M., and Weber, C. F. (2007). Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nat. Rev. Microbiol. 5, 107-118. doi: 10.1038/nrmicro1595
    • (2007) Nat. Rev. Microbiol , vol.5 , pp. 107-118
    • King, G.M.1    Weber, C.F.2
  • 57
    • 34447281277 scopus 로고    scopus 로고
    • The structure of phototrophic communities of soda lakes of the southeastern Transbaikal Region
    • Kompantseva, E. I., Bryantseva, I. A., Komova, A. V., and Namsaraev, B. B. (2007). The structure of phototrophic communities of soda lakes of the southeastern Transbaikal Region. Microbiology 76, 211-219. doi: 10.1134/S0026261707020130
    • (2007) Microbiology , vol.76 , pp. 211-219
    • Kompantseva, E.I.1    Bryantseva, I.A.2    Komova, A.V.3    Namsaraev, B.B.4
  • 58
    • 77449157532 scopus 로고    scopus 로고
    • Communities of anoxygenic phototrophic bacteria in the saline soda lakes of the Kulunda Steppe (Altai region)
    • Kompantseva, E. I., Komova, A. V., and Sorokin, D. Y. (2010). Communities of anoxygenic phototrophic bacteria in the saline soda lakes of the Kulunda Steppe (Altai region). Microbiology 79, 89-95. doi: 10.1134/S0026261710010121
    • (2010) Microbiology , vol.79 , pp. 89-95
    • Kompantseva, E.I.1    Komova, A.V.2    Sorokin, D.Y.3
  • 59
    • 84876527252 scopus 로고    scopus 로고
    • Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins
    • Kwon, S. K., Kim, B. K., Song, J. Y., Kwak, M. J., Lee, C. H., Yoon, J. H., et al. (2013). Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins. Genome Biol. Evol. 5, 187-199. doi: 10.1093/gbe/evs134
    • (2013) Genome Biol. Evol , vol.5 , pp. 187-199
    • Kwon, S.K.1    Kim, B.K.2    Song, J.Y.3    Kwak, M.J.4    Lee, C.H.5    Yoon, J.H.6
  • 60
    • 84883326200 scopus 로고    scopus 로고
    • Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes
    • Lanzen, A., Simachew, A., Gessesse, A., Chmolowska, D., Jonassen, I., and Øvreås, L. (2013). Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes. PLoS ONE 8:e72577. doi: 10.1371/journal.pone.0072577
    • (2013) PLoS ONE , vol.8
    • Lanzen, A.1    Simachew, A.2    Gessesse, A.3    Chmolowska, D.4    Jonassen, I.5    Øvreås, L.6
  • 61
    • 29244447181 scopus 로고    scopus 로고
    • Kalign-an accurate and fast multiple sequence alignment algorithm
    • Lassmann, T., and Sonnhammer, E. L. (2005). Kalign-an accurate and fast multiple sequence alignment algorithm. BMC Bioinformatics 6:298. doi: 10.1186/1471-2105-6-298
    • (2005) BMC Bioinformatics , vol.6 , pp. 298
    • Lassmann, T.1    Sonnhammer, E.L.2
  • 62
    • 79955071958 scopus 로고    scopus 로고
    • An integrative study of a meromictic lake ecosystem in Antarctica
    • Lauro, F. M., DeMaere, M. Z., Yau, S., Brown, M. V., Ng, C., Wilkins, D., et al. (2011). An integrative study of a meromictic lake ecosystem in Antarctica. ISME J. 5, 879-895. doi: 10.1038/ismej.2010.185
    • (2011) ISME J , vol.5 , pp. 879-895
    • Lauro, F.M.1    DeMaere, M.Z.2    Yau, S.3    Brown, M.V.4    Ng, C.5    Wilkins, D.6
  • 63
    • 84902210672 scopus 로고    scopus 로고
    • From metagenomics to pure culture: isolation and characterization of the moderately halophilic bacterium Spiribacter salinus gen. nov., sp. nov
    • León, M. J., Fernández, A. B., Ghai, R., Sánchez-Porro, C., Rodriguez-Valera, F., and Ventosa, A. (2014). From metagenomics to pure culture: isolation and characterization of the moderately halophilic bacterium Spiribacter salinus gen. nov., sp. nov. Appl. Environ. Microbiol. 80, 3850-3857. doi: 10.1128/AEM.00430-14
    • (2014) Appl. Environ. Microbiol , vol.80 , pp. 3850-3857
    • León, M.J.1    Fernández, A.B.2    Ghai, R.3    Sánchez-Porro, C.4    Rodriguez-Valera, F.5    Ventosa, A.6
  • 64
    • 84929626808 scopus 로고    scopus 로고
    • MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
    • Li, D., Liu, C. M., Luo, R., Sadakane, K., and Lam, T. W. (2015). MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics 31, 1674-1676. doi: 10.1093/bioinformatics/btv033
    • (2015) Bioinformatics , vol.31 , pp. 1674-1676
    • Li, D.1    Liu, C.M.2    Luo, R.3    Sadakane, K.4    Lam, T.W.5
  • 65
    • 54249158402 scopus 로고    scopus 로고
    • The nos gene cluster from gram-positive bacterium Geobacillus thermodenitrificans NG80-2 and functional characterization of the recombinant NosZ
    • Liu, X., Gao, C., Zhang, A., Jin, P., Wang, L., and Feng, L. (2008). The nos gene cluster from gram-positive bacterium Geobacillus thermodenitrificans NG80-2 and functional characterization of the recombinant NosZ. FEMS Microbiol. Lett. 289, 46-52. doi: 10.1111/j.1574-6968.2008.01362.x
    • (2008) FEMS Microbiol. Lett , vol.289 , pp. 46-52
    • Liu, X.1    Gao, C.2    Zhang, A.3    Jin, P.4    Wang, L.5    Feng, L.6
  • 66
    • 84932192645 scopus 로고    scopus 로고
    • Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics
    • Llorens-Marès, T., Yooseph, S., Goll, J., Hoffman, J., Vila-Costa, M., Borrego, C. M., et al. (2015). Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics. ISME J. 9, 1648-1661. doi: 10.1038/ismej.2014.254
    • (2015) ISME J , vol.9 , pp. 1648-1661
    • Llorens-Marès, T.1    Yooseph, S.2    Goll, J.3    Hoffman, J.4    Vila-Costa, M.5    Borrego, C.M.6
  • 67
    • 84891763855 scopus 로고    scopus 로고
    • The carbohydrate-active enzymes database (CAZy) in 2013
    • (Database issue)
    • Lombard, V., Golaconda Ramulu, H., Drula, E., Coutinho, P. M., and Henrissat, B. (2014). The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res. 42(Database issue):D490-D495. doi: 10.1093/nar/gkt1178
    • (2014) Nucleic Acids Res , vol.42 , pp. D490-D495
    • Lombard, V.1    Golaconda Ramulu, H.2    Drula, E.3    Coutinho, P.M.4    Henrissat, B.5
  • 69
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and Eddy, S. R. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964. doi: 10.1093/nar/25.5.0955
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 70
    • 84925163899 scopus 로고    scopus 로고
    • Ecology and exploration of the rare biosphere
    • Lynch, M. D., and Neufeld, J. D. (2015). Ecology and exploration of the rare biosphere. Nat. Rev. Microbiol. 13, 217-229. doi: 10.1038/nrmicro3400
    • (2015) Nat. Rev. Microbiol , vol.13 , pp. 217-229
    • Lynch, M.D.1    Neufeld, J.D.2
  • 71
    • 85010439719 scopus 로고
    • A procedure for isolation of DNA from microorganisms
    • Marmur, J. (1961). A procedure for isolation of DNA from microorganisms. J. Mol. Biol. 3, 208-214. doi: 10.1016/S0022-2836(61)80047-8
    • (1961) J. Mol. Biol , vol.3 , pp. 208-214
    • Marmur, J.1
  • 72
    • 72949103084 scopus 로고    scopus 로고
    • CO dehydrogenase genes found in metagenomic fosmid clones from the deep Mediterranean Sea
    • Martin-Cuadrado, A. B., Ghai, R., Gonzaga, A., and Rodriguez-Valera, F. (2009). CO dehydrogenase genes found in metagenomic fosmid clones from the deep Mediterranean Sea. Appl. Environ. Microbiol. 75, 7436-7444. doi: 10.1128/AEM.01283-09
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 7436-7444
    • Martin-Cuadrado, A.B.1    Ghai, R.2    Gonzaga, A.3    Rodriguez-Valera, F.4
  • 73
    • 84939135559 scopus 로고    scopus 로고
    • Diversity of the cell-wall associated genomic island of the archaeon Haloquadratum walsbyi
    • Martin-Cuadrado, A. B., Pašiæ, L., and Rodriguez-Valera, F. (2015). Diversity of the cell-wall associated genomic island of the archaeon Haloquadratum walsbyi. BMC Genomics 16:603. doi: 10.1186/s12864-015-1794-8
    • (2015) BMC Genomics , vol.16 , pp. 603
    • Martin-Cuadrado, A.B.1    Pašiæ, L.2    Rodriguez-Valera, F.3
  • 74
    • 84907351624 scopus 로고    scopus 로고
    • Unveiling viral-host interactions within the 'microbial dark matter'
    • Martínez-García, M., Santos, F., Moreno-Paz, M., Parro, V., and Antón, J. (2014). Unveiling viral-host interactions within the 'microbial dark matter'. Nat. Commun. 5:4542. doi: 10.1038/ncomms5542
    • (2014) Nat. Commun , vol.5 , pp. 4542
    • Martínez-García, M.1    Santos, F.2    Moreno-Paz, M.3    Parro, V.4    Antón, J.5
  • 75
    • 0003077896 scopus 로고
    • Photosynthetic activity of phytoplankton in tropical African soda lakes
    • Melack, J. M. (1981). Photosynthetic activity of phytoplankton in tropical African soda lakes. Hydrobiologia 81, 71-85. doi: 10.1007/BF00048707
    • (1981) Hydrobiologia , vol.81 , pp. 71-85
    • Melack, J.M.1
  • 76
    • 35448992467 scopus 로고    scopus 로고
    • Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi An Natrun, Egypt
    • Mesbah, N. M., Abou-El-Ela, S. H., and Wiegel, J. (2007). Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi An Natrun, Egypt. Microbiol. Ecol. 54, 598-617. doi: 10.1007/s00248-006-9193-y
    • (2007) Microbiol. Ecol , vol.54 , pp. 598-617
    • Mesbah, N.M.1    Abou-El-Ela, S.H.2    Wiegel, J.3
  • 77
    • 0033900361 scopus 로고    scopus 로고
    • Rhodobaca bogoriensis gen. nov. and sp. nov., an alkaliphilic purple nonsulfur bacterium from African Rift Valley soda lakes
    • Milford, A. D., Achenbach, L. A., Jung, D. O., and Madigan, M. T. (2000). Rhodobaca bogoriensis gen. nov. and sp. nov., an alkaliphilic purple nonsulfur bacterium from African Rift Valley soda lakes. Arch. Microbiol. 174, 18-27. doi: 10.1007/s002030000166
    • (2000) Arch. Microbiol , vol.174 , pp. 18-27
    • Milford, A.D.1    Achenbach, L.A.2    Jung, D.O.3    Madigan, M.T.4
  • 78
    • 29144485325 scopus 로고    scopus 로고
    • The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic Bacteria and Archaea
    • Mongodin, E. F., Nelson, K. E., Daugherty, S., Deboy, R. T., Wister, J., Khouri, H., et al. (2005). The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic Bacteria and Archaea. Proc. Natl. Acad. Sci. U.S.A. 102, 18147-18152. doi: 10.1073/pnas.0509073102
    • (2005) Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 18147-18152
    • Mongodin, E.F.1    Nelson, K.E.2    Daugherty, S.3    Deboy, R.T.4    Wister, J.5    Khouri, H.6
  • 79
    • 34547588704 scopus 로고    scopus 로고
    • KAAS: an automatic genome annotation and pathway reconstruction server
    • Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A., and Kanehisa, M. (2007). KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35, 182-185. doi: 10.1093/nar/gkm321
    • (2007) Nucleic Acids Res , vol.35 , pp. 182-185
    • Moriya, Y.1    Itoh, M.2    Okuda, S.3    Yoshizawa, A.4    Kanehisa, M.5
  • 80
    • 79151484027 scopus 로고    scopus 로고
    • Bacterial diversity in the haloalkaline Lake Elmenteita, Kenya
    • Mwirichia, R., Cousin, S., Muigai, A. W., Boga, H. I., and Stackebrandt, E. (2011). Bacterial diversity in the haloalkaline Lake Elmenteita, Kenya. Curr. Microbiol. 62, 209-221. doi: 10.1007/s00284-010-9692-4
    • (2011) Curr. Microbiol , vol.62 , pp. 209-221
    • Mwirichia, R.1    Cousin, S.2    Muigai, A.W.3    Boga, H.I.4    Stackebrandt, E.5
  • 81
    • 84355162254 scopus 로고    scopus 로고
    • De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
    • Narasingarao, P., Podell, S., Ugalde, J. A., Brochier-Armanet, C., Emerson, J. B., Brocks, J. J., et al. (2012). De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME J. 6, 81-93. doi: 10.1038/ismej.2011.78
    • (2012) ISME J , vol.6 , pp. 81-93
    • Narasingarao, P.1    Podell, S.2    Ugalde, J.A.3    Brochier-Armanet, C.4    Emerson, J.B.5    Brocks, J.J.6
  • 82
    • 0036688885 scopus 로고    scopus 로고
    • Diversity of Archaea in hypersaline environments characterized by molecular-phylogenetic and cultivation studies
    • Ochsenreiter, T., Pfeifer, F., and Schleper, C. (2002). Diversity of Archaea in hypersaline environments characterized by molecular-phylogenetic and cultivation studies. Extremophiles 6, 267-274. doi: 10.1007/s00792-001-0253-4
    • (2002) Extremophiles , vol.6 , pp. 267-274
    • Ochsenreiter, T.1    Pfeifer, F.2    Schleper, C.3
  • 83
    • 0027954763 scopus 로고
    • The ecology of the extremely halophilic Archaea
    • Oren, A. (1994). The ecology of the extremely halophilic Archaea. FEMS Microbiol. Rev. 13, 415-439. doi: 10.1111/j.1574-6976.1994.tb00060.x
    • (1994) FEMS Microbiol. Rev , vol.13 , pp. 415-439
    • Oren, A.1
  • 84
    • 84890305097 scopus 로고    scopus 로고
    • Life at high salt concentrations, intracellular KCl concentrations, and acidic proteomes
    • Oren, A. (2013). Life at high salt concentrations, intracellular KCl concentrations, and acidic proteomes. Front. Microbiol. 4:315. doi: 10.3389/fmicb.2013.00315
    • (2013) Front. Microbiol , vol.4 , pp. 315
    • Oren, A.1
  • 85
    • 84929502563 scopus 로고    scopus 로고
    • Taxonomy of halophilic Archaea: current status and future challenges
    • Oren, A. (2014). Taxonomy of halophilic Archaea: current status and future challenges. Extremophiles 18, 825-834. doi: 10.1007/s00792-014-0654-9
    • (2014) Extremophiles , vol.18 , pp. 825-834
    • Oren, A.1
  • 86
    • 70149120519 scopus 로고    scopus 로고
    • Microbial biogeography of six salt lakes in inner Mongolia, China, and a salt lake in Argentina
    • Pagaling, E., Wang, H., Venables, M., Wallace, A., Grant, W. D., Cowan, D. A., et al. (2009). Microbial biogeography of six salt lakes in inner Mongolia, China, and a salt lake in Argentina. Appl. Environ. Microbiol. 75, 5750-5760. doi: 10.1128/AEM.00040-09
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 5750-5760
    • Pagaling, E.1    Wang, H.2    Venables, M.3    Wallace, A.4    Grant, W.D.5    Cowan, D.A.6
  • 87
    • 78149297086 scopus 로고    scopus 로고
    • CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database
    • Park, B. H., Karpinets, T. V., Syed, M. H., Leuze, M. R., and Uberbacher, E. C. (2010). CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. Glycobiology 20, 1574-84. doi: 10.1093/glycob/cwq106
    • (2010) Glycobiology , vol.20 , pp. 1574-1584
    • Park, B.H.1    Karpinets, T.V.2    Syed, M.H.3    Leuze, M.R.4    Uberbacher, E.C.5
  • 88
    • 84930239260 scopus 로고    scopus 로고
    • 'The family Rhodothermaceae, '
    • eds E. Rosenberg, E. F. DeLong, S. Lory, E. Stackebrandt, and F. Thompson (Berlin Heidelberg: Springer-Verlag)
    • Park, S., Akira, Y., and Kazuhiro, K. (2014). "The family Rhodothermaceae, "in The Prokaryotes-Other Major Lineages of Bacteria and the Archaea, eds E. Rosenberg, E. F. DeLong, S. Lory, E. Stackebrandt, and F. Thompson (Berlin Heidelberg: Springer-Verlag), 849-856
    • (2014) The Prokaryotes-Other Major Lineages of Bacteria and the Archaea , pp. 849-856
    • Park, S.1    Akira, Y.2    Kazuhiro, K.3
  • 89
    • 84937040910 scopus 로고    scopus 로고
    • CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    • Parks, D. H., Imelfort, M., Skennerton, C. T., Hugenholtz, P., and Tyson, G. W. (2014). CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res. 25, 1043-1055. doi: 10.1101/gr.186072.114
    • (2014) Genome Res , vol.25 , pp. 1043-1055
    • Parks, D.H.1    Imelfort, M.2    Skennerton, C.T.3    Hugenholtz, P.4    Tyson, G.W.5
  • 90
    • 84924406832 scopus 로고    scopus 로고
    • Rooting the domain Archaea by phylogenomic analysis supports the foundation of the new kingdom Proteoarchaeota
    • Petitjean, C., Deschamps, P., López-García, P., and Moreira, D. (2015). Rooting the domain Archaea by phylogenomic analysis supports the foundation of the new kingdom Proteoarchaeota. Genome Biol. Evol. 7, 191-204. doi: 10.1093/gbe/evu274
    • (2015) Genome Biol. Evol , vol.7 , pp. 191-204
    • Petitjean, C.1    Deschamps, P.2    López-García, P.3    Moreira, D.4
  • 91
    • 4644232773 scopus 로고    scopus 로고
    • Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods
    • Rees, H. C., Grant, W. D., Jones, B. E., and Heaphy, S. (2004). Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods. Extremophiles 8, 63-71. doi: 10.1007/s00792-003-0361-4
    • (2004) Extremophiles , vol.8 , pp. 63-71
    • Rees, H.C.1    Grant, W.D.2    Jones, B.E.3    Heaphy, S.4
  • 92
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European molecular biology open software suite
    • Rice, P., Longden, I., and Bleasby, A. (2000). EMBOSS: the European molecular biology open software suite. Trends Genet. 16, 276-277. doi: 10.1016/S0168-9525(00)02024-2
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 93
    • 84881138595 scopus 로고    scopus 로고
    • Insights into the phylogeny and coding potential of microbial dark matter
    • Rinke, C., Schwientek, P., Sczyrba, A., Ivanova, N. N., Anderson, I. J., Cheng, J., et al. (2013). Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431-437. doi: 10.1038/nature12352
    • (2013) Nature , vol.499 , pp. 431-437
    • Rinke, C.1    Schwientek, P.2    Sczyrba, A.3    Ivanova, N.N.4    Anderson, I.J.5    Cheng, J.6
  • 94
    • 0001265751 scopus 로고
    • Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern
    • Rodriguez-Valera, F., Ventosa, A., Juez, G., and Imhoff, J. F. (1985). Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern. Microbiol. Ecol. 11, 107-115. doi: 10.1007/BF02010483
    • (1985) Microbiol. Ecol , vol.11 , pp. 107-115
    • Rodriguez-Valera, F.1    Ventosa, A.2    Juez, G.3    Imhoff, J.F.4
  • 95
    • 77951112274 scopus 로고    scopus 로고
    • Fructose 1, 6-bisphosphate aldolase/phosphatase may be an ancestral gluconeogenic enzyme
    • Say, R. F., and Fuchs, G. (2010). Fructose 1, 6-bisphosphate aldolase/phosphatase may be an ancestral gluconeogenic enzyme. Nature 464, 1077-1081. doi: 10.1038/nature08884
    • (2010) Nature , vol.464 , pp. 1077-1081
    • Say, R.F.1    Fuchs, G.2
  • 96
    • 84888774923 scopus 로고    scopus 로고
    • Genomes from metagenomics
    • Sharon, I., and Banfield, J. F. (2013). Genomes from metagenomics. Science 342, 1057-1058. doi: 10.1126/science.1247023
    • (2013) Science , vol.342 , pp. 1057-1058
    • Sharon, I.1    Banfield, J.F.2
  • 97
    • 0035800865 scopus 로고    scopus 로고
    • Archaeal fructose-1, 6-bisphosphate aldolases constitute a new family of archaeal type class I aldolase
    • Siebers, B., Brinkmann, H., Dörr, C., Tjaden, B., Lilie, H., van der Oost, J., et al. (2001). Archaeal fructose-1, 6-bisphosphate aldolases constitute a new family of archaeal type class I aldolase. J. Biol. Chem. 276, 28710-28718. doi: 10.1074/jbc. M103447200
    • (2001) J. Biol. Chem , vol.276 , pp. 28710-28718
    • Siebers, B.1    Brinkmann, H.2    Dörr, C.3    Tjaden, B.4    Lilie, H.5    van der Oost, J.6
  • 98
    • 27844507018 scopus 로고    scopus 로고
    • Unusual pathways and enzymes of central carbohydrate metabolism in Archaea
    • Siebers, B., and Schönheit, P. (2005). Unusual pathways and enzymes of central carbohydrate metabolism in Archaea. Curr. Opin. Microbiol. 8, 695-705. doi: 10.1016/j.mib.2005.10.014
    • (2005) Curr. Opin. Microbiol , vol.8 , pp. 695-705
    • Siebers, B.1    Schönheit, P.2
  • 99
    • 84955646377 scopus 로고    scopus 로고
    • Prokaryotic community diversity along an increasing salt gradient in a soda ash concentration pond
    • Simachew, A., Lanzén, A., Gessesse, A., and Øvreås, L. (2015). Prokaryotic community diversity along an increasing salt gradient in a soda ash concentration pond. Microb. Ecol. 71, 326-338. doi: 10.1007/s00248-015-0675-7
    • (2015) Microb. Ecol , vol.71 , pp. 326-338
    • Simachew, A.1    Lanzén, A.2    Gessesse, A.3    Øvreås, L.4
  • 101
    • 84931291879 scopus 로고    scopus 로고
    • Functional microbiology of soda lakes
    • Sorokin, D. Y., Banciu, H. L., and Muyzer, G. (2015a). Functional microbiology of soda lakes. Curr. Opin. Microbiol. 25, 88-96. doi: 10.1016/j.mib.2015.05.004
    • (2015) Curr. Opin. Microbiol , vol.25 , pp. 88-96
    • Sorokin, D.Y.1    Banciu, H.L.2    Muyzer, G.3
  • 103
    • 84991739984 scopus 로고    scopus 로고
    • Biodegradation potential of halo (alkali) philic prokaryotes
    • Sorokin, D. Y., Janssen, A. J., and Muyzer, G. (2012). Biodegradation potential of halo (alkali) philic prokaryotes. Crit. Rev. Environ. Sci. Technol. 42, 811-856. doi: 10.1080/10643389.2010.534037
    • (2012) Crit. Rev. Environ. Sci. Technol , vol.42 , pp. 811-856
    • Sorokin, D.Y.1    Janssen, A.J.2    Muyzer, G.3
  • 104
    • 84929430531 scopus 로고    scopus 로고
    • Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon
    • Sorokin, D. Y., Kublanov, I. V., Gavrilov, S. N., Rojo, D., Roman, P., Golyshin, P. N., et al. (2015c). Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon. ISME J. 9, 240-252. doi: 10.1038/ismej.2015.79
    • (2015) ISME J , vol.9 , pp. 240-252
    • Sorokin, D.Y.1    Kublanov, I.V.2    Gavrilov, S.N.3    Rojo, D.4    Roman, P.5    Golyshin, P.N.6
  • 105
    • 84946744075 scopus 로고    scopus 로고
    • Halo(natrono)archaea isolated from hypersaline lakes utilize cellulose and chitin as growth substrates
    • Sorokin, D. Y., Toshchakov, S. V., Kolganova, T. V., and Kublanov, I. V. (2015d). Halo(natrono)archaea isolated from hypersaline lakes utilize cellulose and chitin as growth substrates. Front. Microbiol. 6:942. doi: 10.3389/fmicb.2015.00942
    • (2015) Front. Microbiol , vol.6 , pp. 942
    • Sorokin, D.Y.1    Toshchakov, S.V.2    Kolganova, T.V.3    Kublanov, I.V.4
  • 106
    • 33244486516 scopus 로고    scopus 로고
    • Extremely halophilic denitrifying bacteria from hypersaline inland lakes Halovibrio denitrificans. nov. and Halospina denitrificans gen. nov., sp. nov., and evidence that the genus name Halovibrio (Fendrich 1989) with the type species H. variabilis should be associated with DSM 3050
    • Sorokin, D. Y., Tourova, T. P., Galinski, E. A., Belloch, C., and Tindall, B. J. (2006). Extremely halophilic denitrifying bacteria from hypersaline inland lakes Halovibrio denitrificans sp. nov. and Halospina denitrificans gen. nov., sp. nov., and evidence that the genus name Halovibrio (Fendrich 1989) with the type species H. variabilis should be associated with DSM 3050. Int. J. Syst. Evol. Microbiol. 56, 379-388. doi: 10.1099/ijs.0.63964-0
    • (2006) Int. J. Syst. Evol. Microbiol , vol.56 , pp. 379-388
    • Sorokin, D.Y.1    Tourova, T.P.2    Galinski, E.A.3    Belloch, C.4    Tindall, B.J.5
  • 107
    • 0008432158 scopus 로고    scopus 로고
    • Roseinatronobacter thiooxidans gen. nov., sp. nov., a new alkaliphilic aerobic bacteriochlorophyll a-containing bacterium isolated from a soda lake
    • Sorokin, D. Y., Tourova, T. P., Kuznetsov, B. B., Bryantseva, I. A., and Gorlenko, V. M. (2000). Roseinatronobacter thiooxidans gen. nov., sp. nov., a new alkaliphilic aerobic bacteriochlorophyll a-containing bacterium isolated from a soda lake. Microbiology 69, 75-82. doi: 10.1007/BF02757261
    • (2000) Microbiology , vol.69 , pp. 75-82
    • Sorokin, D.Y.1    Tourova, T.P.2    Kuznetsov, B.B.3    Bryantseva, I.A.4    Gorlenko, V.M.5
  • 108
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: molecular evolutionary genetics analysis version 6
    • Tamura, K., Strecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6. Mol. Biol. Evol. 30, 2725-2729. doi: 10.1093/molbev/mst197
    • (2013) Mol. Biol. Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Strecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 110
    • 0008916337 scopus 로고
    • 'Prokaryotic life in the alkaline, saline, athalassic environment, '
    • ed. F. Rodriguez-Valera (Boca Raton, FL: CRC Press)
    • Tindall, B. J. (1988). "Prokaryotic life in the alkaline, saline, athalassic environment, "in Halophilic Bacteria, ed F. Rodriguez-Valera (Boca Raton, FL: CRC Press), 31-67
    • (1988) Halophilic Bacteria , pp. 31-67
    • Tindall, B.J.1
  • 111
    • 84911912117 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacteria in soda lake stratified sediments
    • Tourova, T. P., Grechnikova, M. A., Kuznetsov, B. B., and Sorokin, D. Y. (2014). Phylogenetic diversity of bacteria in soda lake stratified sediments. Microbiology 83, 869-879. doi: 10.1134/S0026261714060186
    • (2014) Microbiology , vol.83 , pp. 869-879
    • Tourova, T.P.1    Grechnikova, M.A.2    Kuznetsov, B.B.3    Sorokin, D.Y.4
  • 112
    • 82555202570 scopus 로고    scopus 로고
    • Application of ribulose-1, 5-bisphosphate carboxylase/oxygenase genes as molecular markers for assessment of the diversity of autotrophic microbial communities inhabiting the upper sediment horizons of the saline and soda lakes of the Kulunda Steppe
    • Tourova, T. P., Kovaleva, O. L., Bumazhkin, B. K., Patutina, E. O., Kuznetsov, B. B., Bryantseva, I. A., et al. (2011). Application of ribulose-1, 5-bisphosphate carboxylase/oxygenase genes as molecular markers for assessment of the diversity of autotrophic microbial communities inhabiting the upper sediment horizons of the saline and soda lakes of the Kulunda Steppe. Microbiology 80, 812-825. doi: 10.1134/S0026261711060221
    • (2011) Microbiology , vol.80 , pp. 812-825
    • Tourova, T.P.1    Kovaleva, O.L.2    Bumazhkin, B.K.3    Patutina, E.O.4    Kuznetsov, B.B.5    Bryantseva, I.A.6
  • 113
    • 84940984953 scopus 로고    scopus 로고
    • Primer and platform effects on 16S rRNA tag sequencing
    • Tremblay, J., Singh, K., Fern, A., Kirton, E. S., He, S., Woyke, T., et al. (2015). Primer and platform effects on 16S rRNA tag sequencing. Front. Microbiol. 6:771. doi: 10.3389/fmicb.2015.00771
    • (2015) Front. Microbiol , vol.6 , pp. 771
    • Tremblay, J.1    Singh, K.2    Fern, A.3    Kirton, E.S.4    He, S.5    Woyke, T.6
  • 114
    • 1542377296 scopus 로고    scopus 로고
    • Community structure metabolism through reconstruction of microbial genomes
    • Tyson, G. W., Chapman, J., Hugenholtz, P., Allen, E. E., Ram, R. J., Richardson, P. M., et al. (2004) Community structure metabolism through reconstruction of microbial genomes. Nature 428, 37-43. doi: 10.1038/nature02340
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1    Chapman, J.2    Hugenholtz, P.3    Allen, E.E.4    Ram, R.J.5    Richardson, P.M.6
  • 115
    • 80053597562 scopus 로고    scopus 로고
    • Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria
    • Ugalde, J. A., Podell, S., Narasingarao, P., and Allen, E. E. (2011). Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria. Biol. Direct 6:52. doi: 10.1186/1745-6150-6-52
    • (2011) Biol. Direct , vol.6 , pp. 52
    • Ugalde, J.A.1    Podell, S.2    Narasingarao, P.3    Allen, E.E.4
  • 116
    • 33747873708 scopus 로고    scopus 로고
    • Balneola vulgaris gen. nov., sp. nov., a member of the phylum Bacteroidetes from the north-western Mediterranean Sea
    • Urios, L., Agogué, H., Lesongeur, F., Stackebrandt, E., and Lebaron, P. (2006). Balneola vulgaris gen. nov., sp. nov., a member of the phylum Bacteroidetes from the north-western Mediterranean Sea. Int. J. Syst. Evol. Microbiol. 56, 1883-1887. doi: 10.1099/ijs.0.64285-0
    • (2006) Int. J. Syst. Evol. Microbiol , vol.56 , pp. 1883-1887
    • Urios, L.1    Agogué, H.2    Lesongeur, F.3    Stackebrandt, E.4    Lebaron, P.5
  • 117
    • 70350724345 scopus 로고    scopus 로고
    • Salisaeta longa gen. nov., sp. nov., a red, halophilic member of the Bacteroidetes
    • Vaisman, N., and Oren, A. (2009). Salisaeta longa gen. nov., sp. nov., a red, halophilic member of the Bacteroidetes. Int. J. Syst. Evol. Microbiol. 59, 2571-2574. doi: 10.1099/ijs.0.010892-0
    • (2009) Int. J. Syst. Evol. Microbiol , vol.59 , pp. 2571-2574
    • Vaisman, N.1    Oren, A.2
  • 118
    • 84887101500 scopus 로고    scopus 로고
    • Gracilimonas mengyeensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-western China
    • Wang, Y. X., Li, Y. P., Liu, J. H., Xiao, W., Lai, Y. H., Li, Z. Y., et al. (2013). Gracilimonas mengyeensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-western China. Int. J. Syst. Evol. Microbiol. 63, 3989-3993. doi: 10.1099/ijs.0.052043-0
    • (2013) Int. J. Syst. Evol. Microbiol , vol.63 , pp. 3989-3993
    • Wang, Y.X.1    Li, Y.P.2    Liu, J.H.3    Xiao, W.4    Lai, Y.H.5    Li, Z.Y.6
  • 119
    • 0035861496 scopus 로고    scopus 로고
    • The genome of the natural genetic engineer Agrobacterium tumefaciens C58
    • Wood, D., Setubal, J., Kaul, R., Monks, D., Kitajima, J., Okura, V., et al. (2001). The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science 294, 2317-2323. doi: 10.1126/science.1066804
    • (2001) Science , vol.294 , pp. 2317-2323
    • Wood, D.1    Setubal, J.2    Kaul, R.3    Monks, D.4    Kitajima, J.5    Okura, V.6
  • 120
    • 70350728617 scopus 로고    scopus 로고
    • Psychroflexus salinarum sp. nov., isolated from a marine solar saltern
    • Yoon, J. H., Kang, S. J., Jung, Y. T., and Oh, T. K. (2009). Psychroflexus salinarum sp. nov., isolated from a marine solar saltern. Int. J. Syst. Evol. Microbiol. 59, 2404-2407. doi: 10.1099/ijs.0.008359-0
    • (2009) Int. J. Syst. Evol. Microbiol , vol.59 , pp. 2404-2407
    • Yoon, J.H.1    Kang, S.J.2    Jung, Y.T.3    Oh, T.K.4
  • 121
    • 84894319739 scopus 로고    scopus 로고
    • Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake are widely spread mechanisms for osmoadaptation in the Halobacteriales
    • Youssef, N. H., Savage-Ashlock, K. N., McCully, A. L., Luedtke, B., Shaw, E. I., Hoff, W. D., et al. (2014). Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake are widely spread mechanisms for osmoadaptation in the Halobacteriales. ISME J. 8, 636-649. doi: 10.1038/ismej.2013.165
    • (2014) ISME J , vol.8 , pp. 636-649
    • Youssef, N.H.1    Savage-Ashlock, K.N.2    McCully, A.L.3    Luedtke, B.4    Shaw, E.I.5    Hoff, W.D.6


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