Correlating carbon monoxide oxidation with cox genes in the abundant Marine Roseobacter Clade

ISME Journal

Volumn 5, Issue 4, 2011, Pages 685-691

  Cunliffe, Michael ^a  

^a THE LABORATORY   (United Kingdom)

Author keywords

carbon monoxide; carbon monoxide dehydrogenase; coxL; Marine Roseobacter Clade

Indexed keywords

ALDEHYDE DEHYDROGENASE; CARBON MONOXIDE; CARBON MONOXIDE DEHYDROGENASE; MULTIENZYME COMPLEX;

BACTERIOPLANKTON; BACTERIUM; BIOGEOCHEMICAL CYCLE; CARBON MONOXIDE; ENZYME ACTIVITY; GENE; MARINE ECOSYSTEM;

ARTICLE; CLASSIFICATION; ENZYMOLOGY; GENETICS; METABOLISM; OXIDATION REDUCTION REACTION; PHYLOGENY; PLANKTON; ROSEOBACTER;

ALDEHYDE OXIDOREDUCTASES; CARBON MONOXIDE; MULTIENZYME COMPLEXES; OXIDATION-REDUCTION; PHYLOGENY; PLANKTON; ROSEOBACTER;

ROSEOBACTER;

EID: 79953029156     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2010.170     Document Type: Article

References (27)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. (1990). Basic local alignment search tool. J Mol Biol 215: 403-410.
2. Brinkhoff T, Giebel HA, Simon M. (2008). Diversity, ecology, and genomics of the Roseobacter clade: a short overview. Arch Microbiol 189: 531-539.
3. Cunliffe M, Schafer H, Harrison E, Cleave S, Upstill-Goddard RC, Murrell JC. (2008). Phylogenetic and functional gene analysis of the bacterial and archaeal communities associated with the surface microlayer of an estuary. ISMEJ2: 776-789. (Pubitemid 351951563)
4. Daniel LS, Solomon S. (1998). On the climate forcing of carbon monoxide. J Geophys Res 103: 13249-13260. (Pubitemid 28469507)
5. Dunfield KE, King GM. (2004). Molecular analysis of carbon monoxide-oxidizing bacteria associated with recent Hawaiian volcanic deposits. Appl Environ Microbiol 70: 4242-4248. (Pubitemid 38969772)
6. Dunfield KE, King GM. (2005). Analysis of the distribution and diversity in recent Hawaiian volcanic deposits of a putative carbon monoxide dehydrogenase large subunit gene. Environ Microbiol 7: 1405-1412. (Pubitemid 41204934)
7. 2 and CO2. Gene 32: 67-75. (Pubitemid 37485983)
8. Giovannoni S, Rappé M. (2000). Evolution, diversity and molecular ecology of marine prokaryotes. In: Kirchman DL (ed). Microbial Ecology of the Oceans. Wiley-Liss: New Jersey, USA.
9. González JM, Kiene RP, Moran MA. (1999). Transforma-tion of sulfur compounds by an abundant lineage of marine bacteria in the α-subclass of the class Proteo-bacteria. Appl Environ Microbiol 65: 3810-3819.
10. Hansel CM, Francis CA. (2006). Coupled photochemical and enzymatic Mn(II) oxidation pathways of a plank-tonic Roseobacter-like bacterium. Appl Environ Micro-biol 72: 3543-3549. (Pubitemid 43728009)
11. King GM. (2003). Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity. Appl Environ Microbiol 69: 7257-7265. (Pubitemid 38585377)
12. King GM, Weber CF. (2007). Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nat Rev Microbiol 5: 107-118. (Pubitemid 46151869)
13. Lorite MJ, Tachil J, Sanjuin J, Meyer O, Bedmar EJ. (2000). Carbon monoxide dehydrogenase activity in Bradyr-hizobium japonicum. Appl Environ Microbiol 66: 1871-1876. (Pubitemid 30253704)
14. Meyer O, Schlegel HG. (1983). Biology of aerobic carbon monoxide-oxidizing bacteria. Annu Rev Microbiol 37: 277-310.
15. Moran MA, Belas R, Schell MA. (2007). Ecological genomics of marine Roseobacters. Appl Environ Microbiol 73: 4559-4569. (Pubitemid 47122601)
16. Moran MA, Buchan A, Gonzalez JM, Heidelberg JF, Whitman WB, Kiene RP et al. (2004). Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432: 910-913. (Pubitemid 40037153)
17. Moran MA, Miller WL. (2007). Resourceful heterotrophs make the most of light in the coastal ocean. Nat Rev Microbiol 5: 792-800. (Pubitemid 47423767)
18. Newton RJ, Griffin LE, Bowles KM, Meile C, Gifford S, Givens CE et al. (2010). Genome characteristics of a generalist marine bacterial lineage. ISME J 4: 784-798.
19. 2] cluster. J Biol Chem 284: 9578-9586.
20. Schafer H, McDonald IR, Nightingale PD, Murrell JC. (2005). Evidence for the presence of a CmuA methyl transferase pathway in novel marine methyl halide-oxidizing bacteria. Environ Microbiol 7: 839-852. (Pubitemid 40697642)
21. Tamura K, Dudley J, Nei M, Kumar S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599. (Pubitemid 47236692)
22. Tolli JD, Taylor CD. (2005). Biological CO oxidation in the Sargasso Sea and in Vineyard Sound, Massachusetts. Limnol Oceanogr 50: 1205-1212. (Pubitemid 41033842)
23. Wagner-Döbler I, Biebl H. (2006). Environmental biology of the marine Roseobacter lineage. Annu Rev Micro-biol 60: 255-280. (Pubitemid 44627949)
24. Weber CF, King GM. (2007). Physiological, ecological and phylogenetic characterization of Stappia, a marine CO-oxidizing bacterial genus. Appl Environ Microbiol 73: 1266-1276.
25. Yurkov VV, Beatty JT. (1998). Aerobic anoxygenic phototrophic bacteria. Microbiol Mol Biol Rev 62: 695-724. (Pubitemid 28415551)
26. Zafiriou OC, Andrews SS, Wang W. (2003). Concordant estimates of oceanic carbon monoxide source and sink processes in the Pacific yield a balanced global 'blue-water' CO budget. Global Biogeochem Cy 17: 15-11-15-13.
27. Zuo Y, Jones RD. (1995). Formation of carbon monoxide by photolysis of dissolved marine organic material and its significance in the carbon cycling of the oceans. Naturwiss 82: 472-474.