-
1
-
-
0021779934
-
Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
-
10.1146/annurev.mi.39.100185.001541, 3904603
-
Staley JT, Konopka A. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 1985, 39:321-346. 10.1146/annurev.mi.39.100185.001541, 3904603.
-
(1985)
Annu Rev Microbiol
, vol.39
, pp. 321-346
-
-
Staley, J.T.1
Konopka, A.2
-
2
-
-
84879932140
-
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
-
10.1073/pnas.1304246110, 3710821, 23801761
-
Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, et al. Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proc Natl Acad Sci 2013, 110:11463-11468. 10.1073/pnas.1304246110, 3710821, 23801761.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. 11463-11468
-
-
Swan, B.K.1
Tupper, B.2
Sczyrba, A.3
Lauro, F.M.4
Martinez-Garcia, M.5
González, J.M.6
Luo, H.7
Wright, J.J.8
Landry, Z.C.9
Hanson, N.W.10
-
3
-
-
84868369211
-
Streamlining and core genome conservation among highly divergent members of the SAR11 clade
-
Grote J, Thrash JC, Huggett MJ, Landry ZC, Carini P, Giovannoni SJ, Rappé MS. Streamlining and core genome conservation among highly divergent members of the SAR11 clade. mBio 2012, 3:1434-1437.
-
(2012)
mBio
, vol.3
, pp. 1434-1437
-
-
Grote, J.1
Thrash, J.C.2
Huggett, M.J.3
Landry, Z.C.4
Carini, P.5
Giovannoni, S.J.6
Rappé, M.S.7
-
4
-
-
84856742115
-
Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC
-
10.1111/j.1758-2229.2011.00274.x, 23757226
-
Ghai R, McMahon KD, Rodriguez-Valera F. Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC. Environ Microbiol Rep 2012, 4:29-35. 10.1111/j.1758-2229.2011.00274.x, 23757226.
-
(2012)
Environ Microbiol Rep
, vol.4
, pp. 29-35
-
-
Ghai, R.1
McMahon, K.D.2
Rodriguez-Valera, F.3
-
5
-
-
84883136008
-
Metagenomics uncovers a new group of low GC and ultra-small marine actinobacteria
-
3747508, 23959135
-
Ghai R, Mizuno CM, Picazo A, Camacho A, Rodriguez-Valera F. Metagenomics uncovers a new group of low GC and ultra-small marine actinobacteria. Sci Rep 2013, 3:2471. 3747508, 23959135.
-
(2013)
Sci Rep
, vol.3
, pp. 2471
-
-
Ghai, R.1
Mizuno, C.M.2
Picazo, A.3
Camacho, A.4
Rodriguez-Valera, F.5
-
6
-
-
84879678051
-
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
-
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat Biotech 2013, 31:533-538.
-
(2013)
Nat Biotech
, vol.31
, pp. 533-538
-
-
Albertsen, M.1
Hugenholtz, P.2
Skarshewski, A.3
Nielsen, K.L.4
Tyson, G.W.5
Nielsen, P.H.6
-
7
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
10.1038/nature12352, 23851394
-
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng J-F, Darling A, Malfatti S, Swan BK, Gies EA, et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature 2013, 499:431-437. 10.1038/nature12352, 23851394.
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
Cheng, J.-F.6
Darling, A.7
Malfatti, S.8
Swan, B.K.9
Gies, E.A.10
-
8
-
-
0030062396
-
Sequencing of bacterial and archaeal 16S rRNA genes directly amplified from a hypersaline environment
-
Benlloch S, Martínez-Murcia AJ, Rodríguez-Valera F. Sequencing of bacterial and archaeal 16S rRNA genes directly amplified from a hypersaline environment. Syst Appl Microbiol 1995, 18:574-581.
-
(1995)
Syst Appl Microbiol
, vol.18
, pp. 574-581
-
-
Benlloch, S.1
Martínez-Murcia, A.J.2
Rodríguez-Valera, F.3
-
9
-
-
0035984127
-
Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern
-
10.1046/j.1462-2920.2002.00306.x, 12071980
-
Benlloch S, López-López A, Casamayor EO, Øvreås L, Goddard V, Daae FL, Smerdon G, Massana R, Joint I, Thingstad F, et al. Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern. Environ Microbiol 2002, 4:349-360. 10.1046/j.1462-2920.2002.00306.x, 12071980.
-
(2002)
Environ Microbiol
, vol.4
, pp. 349-360
-
-
Benlloch, S.1
López-López, A.2
Casamayor, E.O.3
Øvreås, L.4
Goddard, V.5
Daae, F.L.6
Smerdon, G.7
Massana, R.8
Joint, I.9
Thingstad, F.10
-
10
-
-
0033301308
-
Fluorescence in situ hybridization analysis of the prokaryotic community inhabiting crystallizer ponds
-
10.1046/j.1462-2920.1999.00065.x, 11207773
-
Antón J, Llobet-Brossa E, Rodríguez-Valera F, Amann R. Fluorescence in situ hybridization analysis of the prokaryotic community inhabiting crystallizer ponds. Environ Microbiol 1999, 1:517-523. 10.1046/j.1462-2920.1999.00065.x, 11207773.
-
(1999)
Environ Microbiol
, vol.1
, pp. 517-523
-
-
Antón, J.1
Llobet-Brossa, E.2
Rodríguez-Valera, F.3
Amann, R.4
-
11
-
-
10044226982
-
Isolation and cultivation of Walsby's square archaeon
-
10.1111/j.1462-2920.2004.00692.x, 15560825
-
Bolhuis H, Poele EM, Rodriguez-Valera F. Isolation and cultivation of Walsby's square archaeon. Environ Microbiol 2004, 6:1287-1291. 10.1111/j.1462-2920.2004.00692.x, 15560825.
-
(2004)
Environ Microbiol
, vol.6
, pp. 1287-1291
-
-
Bolhuis, H.1
Poele, E.M.2
Rodriguez-Valera, F.3
-
12
-
-
84883703281
-
New abundant microbial groups in aquatic hypersaline environments
-
3216616, 22355652
-
Ghai R, Pašić L, Fernández AB, Martin-Cuadrado A-B, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, et al. New abundant microbial groups in aquatic hypersaline environments. Sci Rep 2011, 1:135. 3216616, 22355652.
-
(2011)
Sci Rep
, vol.1
, pp. 135
-
-
Ghai, R.1
Pašić, L.2
Fernández, A.B.3
Martin-Cuadrado, A.-B.4
Mizuno, C.M.5
McMahon, K.D.6
Papke, R.T.7
Stepanauskas, R.8
Rodriguez-Brito, B.9
Rohwer, F.10
-
13
-
-
84355162254
-
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
-
10.1038/ismej.2011.78, 3246234, 21716304
-
Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME J 2012, 6:81-93. 10.1038/ismej.2011.78, 3246234, 21716304.
-
(2012)
ISME J
, vol.6
, pp. 81-93
-
-
Narasingarao, P.1
Podell, S.2
Ugalde, J.A.3
Brochier-Armanet, C.4
Emerson, J.B.5
Brocks, J.J.6
Heidelberg, K.B.7
Banfield, J.F.8
Allen, E.E.9
-
14
-
-
84876310485
-
Assembly-driven community genomics of a hypersaline microbial ecosystem
-
10.1371/journal.pone.0061692, 3630111, 23637883
-
Podell S, Ugalde JA, Narasingarao P, Banfield JF, Heidelberg KB, Allen EE. Assembly-driven community genomics of a hypersaline microbial ecosystem. PLoS ONE 2013, 8:e61692. 10.1371/journal.pone.0061692, 3630111, 23637883.
-
(2013)
PLoS ONE
, vol.8
-
-
Podell, S.1
Ugalde, J.A.2
Narasingarao, P.3
Banfield, J.F.4
Heidelberg, K.B.5
Allen, E.E.6
-
15
-
-
50649122735
-
Nanoarchaeal 16S rRNA gene sequences are widely dispersed in hyperthermophilic and mesophilic halophilic environments
-
10.1007/s00792-008-0170-x, 18553053
-
Casanueva A, Galada N, Baker G, Grant W, Heaphy S, Jones B, Yanhe M, Ventosa A, Blamey J, Cowan D. Nanoarchaeal 16S rRNA gene sequences are widely dispersed in hyperthermophilic and mesophilic halophilic environments. Extremophiles 2008, 12:651-656. 10.1007/s00792-008-0170-x, 18553053.
-
(2008)
Extremophiles
, vol.12
, pp. 651-656
-
-
Casanueva, A.1
Galada, N.2
Baker, G.3
Grant, W.4
Heaphy, S.5
Jones, B.6
Yanhe, M.7
Ventosa, A.8
Blamey, J.9
Cowan, D.10
-
16
-
-
0031810562
-
Biology of moderately halophilic aerobic bacteria
-
98923, 9618450
-
Ventosa A, Nieto JJ, Oren A. Biology of moderately halophilic aerobic bacteria. Microbiol Mol Biol Rev 1998, 62:504-544. 98923, 9618450.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 504-544
-
-
Ventosa, A.1
Nieto, J.J.2
Oren, A.3
-
17
-
-
35648941632
-
Phylogeny and evolution of the family Ectothiorhodospiraceae based on comparison of 16S rRNA, cbbL and nifH gene sequences
-
10.1099/ijs.0.65041-0, 17911316
-
Tourova TP, Spiridonova EM, Berg IA, Slobodova NV, Boulygina ES, Sorokin DY. Phylogeny and evolution of the family Ectothiorhodospiraceae based on comparison of 16S rRNA, cbbL and nifH gene sequences. Int J Syst Evol Microbiol 2007, 57:2387-2398. 10.1099/ijs.0.65041-0, 17911316.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 2387-2398
-
-
Tourova, T.P.1
Spiridonova, E.M.2
Berg, I.A.3
Slobodova, N.V.4
Boulygina, E.S.5
Sorokin, D.Y.6
-
18
-
-
0036794790
-
Anaerobic oxidation of arsenite in mono lake water and by a facultative, arsenite-oxidizing chemoautotroph, strain MLHE-1
-
10.1128/AEM.68.10.4795-4802.2002, 126446, 12324322
-
Oremland RS, Hoeft SE, Santini JM, Bano N, Hollibaugh RA, Hollibaugh JT. Anaerobic oxidation of arsenite in mono lake water and by a facultative, arsenite-oxidizing chemoautotroph, strain MLHE-1. Appl Environ Microbiol 2002, 68:4795-4802. 10.1128/AEM.68.10.4795-4802.2002, 126446, 12324322.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4795-4802
-
-
Oremland, R.S.1
Hoeft, S.E.2
Santini, J.M.3
Bano, N.4
Hollibaugh, R.A.5
Hollibaugh, J.T.6
-
19
-
-
0027166039
-
Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a Subterranean Brine
-
10.1099/00207713-43-3-514, 8347510
-
Adkins JP, Madigan MT, Mandelco L, Woese CR, Tanner RS. Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a Subterranean Brine. Int J Syst Bacteriol 1993, 43:514-520. 10.1099/00207713-43-3-514, 8347510.
-
(1993)
Int J Syst Bacteriol
, vol.43
, pp. 514-520
-
-
Adkins, J.P.1
Madigan, M.T.2
Mandelco, L.3
Woese, C.R.4
Tanner, R.S.5
-
20
-
-
0000301525
-
Characteristics of two marine nitrite oxidizing bacteria, Nitrospina gracilis nov. gen. nov. sp. and Nitrococcus mobilis nov. gen. nov. sp
-
Watson S, Waterbury J. Characteristics of two marine nitrite oxidizing bacteria, Nitrospina gracilis nov. gen. nov. sp. and Nitrococcus mobilis nov. gen. nov. sp. Archiv Mikrobiol 1971, 77:203-230.
-
(1971)
Archiv Mikrobiol
, vol.77
, pp. 203-230
-
-
Watson, S.1
Waterbury, J.2
-
21
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
10.1073/pnas.0409727102, 549018, 15701695
-
Konstantinidis KT, Tiedje JM. Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A 2005, 102:2567-2572. 10.1073/pnas.0409727102, 549018, 15701695.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
22
-
-
77952670727
-
Viral and microbial community dynamics in four aquatic environments
-
10.1038/ismej.2010.1, 20147985
-
Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, et al. Viral and microbial community dynamics in four aquatic environments. ISME J 2010, 4:739-751. 10.1038/ismej.2010.1, 20147985.
-
(2010)
ISME J
, vol.4
, pp. 739-751
-
-
Rodriguez-Brito, B.1
Li, L.2
Wegley, L.3
Furlan, M.4
Angly, F.5
Breitbart, M.6
Buchanan, J.7
Desnues, C.8
Dinsdale, E.9
Edwards, R.10
-
23
-
-
70350180460
-
Explaining microbial population genomics through phage predation
-
Rodriguez-Valera F, Martin-Cuadrado A-B, Rodriguez-Brito B, Pasic L, Thingstad TF, Rohwer F, Mira A. Explaining microbial population genomics through phage predation. Nat Rev Micro 2009, 7:828-836.
-
(2009)
Nat Rev Micro
, vol.7
, pp. 828-836
-
-
Rodriguez-Valera, F.1
Martin-Cuadrado, A.-B.2
Rodriguez-Brito, B.3
Pasic, L.4
Thingstad, T.F.5
Rohwer, F.6
Mira, A.7
-
25
-
-
38049032445
-
Interrelationships between Dunaliella and halophilic prokaryotes in saltern crystallizer ponds
-
10.1007/s00792-006-0053-y, 17186316
-
Elevi Bardavid R, Khristo P, Oren A. Interrelationships between Dunaliella and halophilic prokaryotes in saltern crystallizer ponds. Extremophiles 2008, 12:5-14. 10.1007/s00792-006-0053-y, 17186316.
-
(2008)
Extremophiles
, vol.12
, pp. 5-14
-
-
Elevi Bardavid, R.1
Khristo, P.2
Oren, A.3
-
26
-
-
67649389656
-
Glycerol-mediated repression of glucose metabolism and glycerol kinase as the sole route of glycerol catabolism in the haloarchaeon Haloferax volcanii
-
10.1128/JB.00131-09, 2698487, 19411322
-
Sherwood KE, Cano DJ, Maupin-Furlow JA. Glycerol-mediated repression of glucose metabolism and glycerol kinase as the sole route of glycerol catabolism in the haloarchaeon Haloferax volcanii. J Bacteriol 2009, 191:4307-4315. 10.1128/JB.00131-09, 2698487, 19411322.
-
(2009)
J Bacteriol
, vol.191
, pp. 4307-4315
-
-
Sherwood, K.E.1
Cano, D.J.2
Maupin-Furlow, J.A.3
-
27
-
-
0035702148
-
Bacterial phosphotransferase system (PTS) in carbohydrate uptake and control of carbon metabolism
-
Kotrba P, Inui M, Yukawa H. Bacterial phosphotransferase system (PTS) in carbohydrate uptake and control of carbon metabolism. J Biosci Bioeng 2001, 92:502-517.
-
(2001)
J Biosci Bioeng
, vol.92
, pp. 502-517
-
-
Kotrba, P.1
Inui, M.2
Yukawa, H.3
-
28
-
-
33747334086
-
The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity
-
10.1186/1471-2164-7-169, 1544339, 16820047
-
Bolhuis H, Palm P, Wende A, Falb M, Rampp M, Rodriguez-Valera F, Pfeiffer F, Oesterhelt D. The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity. BMC Genomics 2006, 7:169. 10.1186/1471-2164-7-169, 1544339, 16820047.
-
(2006)
BMC Genomics
, vol.7
, pp. 169
-
-
Bolhuis, H.1
Palm, P.2
Wende, A.3
Falb, M.4
Rampp, M.5
Rodriguez-Valera, F.6
Pfeiffer, F.7
Oesterhelt, D.8
-
29
-
-
0022974540
-
Bacterial sarcosine oxidase: comparison of two multisubunit enzymes containing both covalent and noncovalent flavin
-
10.1021/bi00368a034, 3790506
-
Kvalnes-Krick K, Jorns MS. Bacterial sarcosine oxidase: comparison of two multisubunit enzymes containing both covalent and noncovalent flavin. Biochemistry 1986, 25:6061-6069. 10.1021/bi00368a034, 3790506.
-
(1986)
Biochemistry
, vol.25
, pp. 6061-6069
-
-
Kvalnes-Krick, K.1
Jorns, M.S.2
-
30
-
-
1242269905
-
Genomics of the ccoNOQP-encoded cbb 3 oxidase complex in bacteria
-
10.1007/s00203-003-0641-5, 14714103
-
Cosseau C, Batut J. Genomics of the ccoNOQP-encoded cbb 3 oxidase complex in bacteria. Arch Microbiol 2004, 181:89-96. 10.1007/s00203-003-0641-5, 14714103.
-
(2004)
Arch Microbiol
, vol.181
, pp. 89-96
-
-
Cosseau, C.1
Batut, J.2
-
31
-
-
33750957249
-
Genome-enabled analysis of the utilization of taurine as sole source of carbon or of nitrogen by Rhodobacter sphaeroides 2.4.1
-
10.1099/mic.0.29195-0, 17074891
-
Denger K, Smits THM, Cook AM. Genome-enabled analysis of the utilization of taurine as sole source of carbon or of nitrogen by Rhodobacter sphaeroides 2.4.1. Microbiology 2006, 152:3197-3206. 10.1099/mic.0.29195-0, 17074891.
-
(2006)
Microbiology
, vol.152
, pp. 3197-3206
-
-
Denger, K.1
Smits, T.H.M.2
Cook, A.M.3
-
32
-
-
84875038227
-
The genes and enzymes of phosphonate metabolism by bacteria, and their distribution in the marine environment
-
3266647, 22303297
-
Villarreal-Chiu JF, Quinn JP, McGrath JW. The genes and enzymes of phosphonate metabolism by bacteria, and their distribution in the marine environment. Front Microbiol 2012, 3:19. 3266647, 22303297.
-
(2012)
Front Microbiol
, vol.3
, pp. 19
-
-
Villarreal-Chiu, J.F.1
Quinn, J.P.2
McGrath, J.W.3
-
33
-
-
0027385183
-
Regulation of the heat-shock response in bacteria
-
10.1146/annurev.mi.47.100193.001541, 7504905
-
Yura T, Nagai H, Mori H. Regulation of the heat-shock response in bacteria. Annu Rev Microbiol 1993, 47:321-350. 10.1146/annurev.mi.47.100193.001541, 7504905.
-
(1993)
Annu Rev Microbiol
, vol.47
, pp. 321-350
-
-
Yura, T.1
Nagai, H.2
Mori, H.3
-
34
-
-
0024799191
-
Prokaryotic signal transduction mediated by sensor and regulator protein pairs
-
10.1146/annurev.ge.23.120189.001523, 2694934
-
Albright LM, Huala E, Ausubel FM. Prokaryotic signal transduction mediated by sensor and regulator protein pairs. Annu Rev Genet 1989, 23:311-336. 10.1146/annurev.ge.23.120189.001523, 2694934.
-
(1989)
Annu Rev Genet
, vol.23
, pp. 311-336
-
-
Albright, L.M.1
Huala, E.2
Ausubel, F.M.3
-
35
-
-
0003338719
-
Phosphorus assimilation and control of the phosphate regulon
-
Washington, D. C: ASM Press, Neidhardt FC, Curtiss RIII, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE
-
Wanner BL. Phosphorus assimilation and control of the phosphate regulon. Escherichia coli and Salmonella typhimurium: cellular and molecular biology 1996, 1357-1381. Washington, D. C: ASM Press, Neidhardt FC, Curtiss RIII, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE.
-
(1996)
Escherichia coli and Salmonella typhimurium: cellular and molecular biology
, pp. 1357-1381
-
-
Wanner, B.L.1
-
36
-
-
35448984675
-
Nitrogen regulation in bacteria and archaea
-
10.1146/annurev.micro.61.080706.093409, 17506680
-
Leigh JA, Dodsworth JA. Nitrogen regulation in bacteria and archaea. Annu Rev Microbiol 2007, 61:349-377. 10.1146/annurev.micro.61.080706.093409, 17506680.
-
(2007)
Annu Rev Microbiol
, vol.61
, pp. 349-377
-
-
Leigh, J.A.1
Dodsworth, J.A.2
-
37
-
-
54349101579
-
Osmoadaptation mechanisms in prokaryotes: distribution of compatible solutes
-
Empadinhas N, da Costa M. Osmoadaptation mechanisms in prokaryotes: distribution of compatible solutes. Int Microbiol 2008, 11:151-161.
-
(2008)
Int Microbiol
, vol.11
, pp. 151-161
-
-
Empadinhas, N.1
da Costa, M.2
-
38
-
-
44849113111
-
Regulation of osmoadaptation in the moderate halophile Halobacillus halophilus: chloride, glutamate and switching osmolyte strategies
-
10.1186/1746-1448-4-4, 2412884, 18442383
-
Saum S, Muller V. Regulation of osmoadaptation in the moderate halophile Halobacillus halophilus: chloride, glutamate and switching osmolyte strategies. Saline Systems 2008, 4:4. 10.1186/1746-1448-4-4, 2412884, 18442383.
-
(2008)
Saline Systems
, vol.4
, pp. 4
-
-
Saum, S.1
Muller, V.2
-
39
-
-
0033965298
-
Genes for the synthesis of the osmoprotectant glycine betaine from choline in the moderately halophilic bacterium Halomonas elongata DSM 3043
-
Cánovas D, Vargas C, Kneip S, Morón Ma J, Ventosa A, Bremer E, Nieto JJ. Genes for the synthesis of the osmoprotectant glycine betaine from choline in the moderately halophilic bacterium Halomonas elongata DSM 3043. Microbiology 2000, 146:455-463.
-
(2000)
Microbiology
, vol.146
, pp. 455-463
-
-
Cánovas, D.1
Vargas, C.2
Kneip, S.3
Morón Ma, J.4
Ventosa, A.5
Bremer, E.6
Nieto, J.J.7
-
40
-
-
29144439151
-
Characterization of the ectoine biosynthesis genes of haloalkalotolerant obligate methanotroph "Methylomicrobium alcaliphilum 20Z"
-
10.1007/s00203-005-0042-z, 16283251
-
Reshetnikov A, Khmelenina V, Trotsenko Y. Characterization of the ectoine biosynthesis genes of haloalkalotolerant obligate methanotroph "Methylomicrobium alcaliphilum 20Z" Arch Microbiol 2006, 184:286-297. 10.1007/s00203-005-0042-z, 16283251.
-
(2006)
Arch Microbiol
, vol.184
, pp. 286-297
-
-
Reshetnikov, A.1
Khmelenina, V.2
Trotsenko, Y.3
-
41
-
-
0032443691
-
Characterization of the genes for the biosynthesis of the compatible solute ectoine in the moderately halophilic bacterium Halomonas elongata DSM 3043
-
10.1016/S0723-2020(98)80060-X, 9924816
-
Cánovas D, Vargas C, Calderón MI, Ventosa A, Nieto JJ. Characterization of the genes for the biosynthesis of the compatible solute ectoine in the moderately halophilic bacterium Halomonas elongata DSM 3043. Syst Appl Microbiol 1998, 21:487-497. 10.1016/S0723-2020(98)80060-X, 9924816.
-
(1998)
Syst Appl Microbiol
, vol.21
, pp. 487-497
-
-
Cánovas, D.1
Vargas, C.2
Calderón, M.I.3
Ventosa, A.4
Nieto, J.J.5
-
42
-
-
84865821766
-
Acid-shifted isoelectric point profiles of the proteins in a hypersaline microbial mat: an adaptation to life at high salt concentrations?
-
10.1007/s00792-012-0476-6, 22907126
-
Elevi Bardavid R, Oren A. Acid-shifted isoelectric point profiles of the proteins in a hypersaline microbial mat: an adaptation to life at high salt concentrations?. Extremophiles 2012, 16:787-792. 10.1007/s00792-012-0476-6, 22907126.
-
(2012)
Extremophiles
, vol.16
, pp. 787-792
-
-
Elevi Bardavid, R.1
Oren, A.2
-
43
-
-
84872054814
-
An extremely halophilic proteobacterium combines a highly acidic proteome with a low cytoplasmic potassium content
-
10.1074/jbc.M112.420505, 23144460
-
Deole R, Challacombe J, Raiford DW, Hoff WD. An extremely halophilic proteobacterium combines a highly acidic proteome with a low cytoplasmic potassium content. J Biol Chem 2013, 288:581-588. 10.1074/jbc.M112.420505, 23144460.
-
(2013)
J Biol Chem
, vol.288
, pp. 581-588
-
-
Deole, R.1
Challacombe, J.2
Raiford, D.W.3
Hoff, W.D.4
-
44
-
-
78649982124
-
Tripartite ATP-independent periplasmic (TRAP) transporters in bacteria and archaea
-
10.1111/j.1574-6976.2010.00236.x, 20584082
-
Mulligan C, Fischer M, Thomas GH. Tripartite ATP-independent periplasmic (TRAP) transporters in bacteria and archaea. FEMS Microbiol Rev 2011, 35:68-86. 10.1111/j.1574-6976.2010.00236.x, 20584082.
-
(2011)
FEMS Microbiol Rev
, vol.35
, pp. 68-86
-
-
Mulligan, C.1
Fischer, M.2
Thomas, G.H.3
-
45
-
-
26444578862
-
The Mrp system: a giant among monovalent cation/proton antiporters?
-
10.1007/s00792-005-0451-6, 15980940
-
Swartz T, Ikewada S, Ishikawa O, Ito M, Krulwich T. The Mrp system: a giant among monovalent cation/proton antiporters?. Extremophiles 2005, 9:345-354. 10.1007/s00792-005-0451-6, 15980940.
-
(2005)
Extremophiles
, vol.9
, pp. 345-354
-
-
Swartz, T.1
Ikewada, S.2
Ishikawa, O.3
Ito, M.4
Krulwich, T.5
-
46
-
-
0022349278
-
Regulation of cytoplasmic pH in bacteria
-
373043, 3912654
-
Brooth IR. Regulation of cytoplasmic pH in bacteria. Microbiol Rev 1985, 49:359-378. 373043, 3912654.
-
(1985)
Microbiol Rev
, vol.49
, pp. 359-378
-
-
Brooth, I.R.1
-
47
-
-
0022610802
-
Osmoregulation by potassium transport in Escherichia coli
-
Epstein W. Osmoregulation by potassium transport in Escherichia coli. FEMS Microbiol Lett 1986, 39:73-78.
-
(1986)
FEMS Microbiol Lett
, vol.39
, pp. 73-78
-
-
Epstein, W.1
-
48
-
-
77954678407
-
Potassium and sodium transport in non-animal cells: the Trk/Ktr/HKT transporter family
-
10.1007/s00018-010-0317-7, 20333436
-
Corratgé-Faillie C, Jabnoune M, Zimmermann S, Véry AA, Fizames C, Sentenac H. Potassium and sodium transport in non-animal cells: the Trk/Ktr/HKT transporter family. Cell Mol Life Sci 2010, 67:2511-2532. 10.1007/s00018-010-0317-7, 20333436.
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 2511-2532
-
-
Corratgé-Faillie, C.1
Jabnoune, M.2
Zimmermann, S.3
Véry, A.A.4
Fizames, C.5
Sentenac, H.6
-
49
-
-
29144485325
-
The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea
-
10.1073/pnas.0509073102, 1312414, 16330755
-
Mongodin EF, Nelson KE, Daugherty S, DeBoy RT, Wister J, Khouri H, Weidman J, Walsh DA, Papke RT, Sanchez Perez G, et al. The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea. Proc Natl Acad Sci USA 2005, 102:18147-18152. 10.1073/pnas.0509073102, 1312414, 16330755.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 18147-18152
-
-
Mongodin, E.F.1
Nelson, K.E.2
Daugherty, S.3
DeBoy, R.T.4
Wister, J.5
Khouri, H.6
Weidman, J.7
Walsh, D.A.8
Papke, R.T.9
Sanchez Perez, G.10
-
50
-
-
84889439782
-
Microbial rhodopsins: phylogenetic and functional diversity
-
Weinheim, FRG: Wiley-VCH Verlag GmbH & Co. KGaA
-
Spudich JL, Jung K-H. Microbial rhodopsins: phylogenetic and functional diversity. Handbook of Photosensory Receptors 2005, 1-23. Weinheim, FRG: Wiley-VCH Verlag GmbH & Co. KGaA.
-
(2005)
Handbook of Photosensory Receptors
, pp. 1-23
-
-
Spudich, J.L.1
Jung, K.-H.2
-
51
-
-
84877090640
-
Poles apart: arctic and antarctic Octadecabacter strains share high genome plasticity and a New type of xanthorhodopsin
-
10.1371/journal.pone.0063422, 3646047, 23671678
-
Vollmers J, Voget S, Dietrich S, Gollnow K, Smits M, Meyer K, Brinkhoff T, Simon M, Daniel R. Poles apart: arctic and antarctic Octadecabacter strains share high genome plasticity and a New type of xanthorhodopsin. PLoS ONE 2013, 8:e63422. 10.1371/journal.pone.0063422, 3646047, 23671678.
-
(2013)
PLoS ONE
, vol.8
-
-
Vollmers, J.1
Voget, S.2
Dietrich, S.3
Gollnow, K.4
Smits, M.5
Meyer, K.6
Brinkhoff, T.7
Simon, M.8
Daniel, R.9
-
52
-
-
84875294543
-
Carotenoid biosynthesis and overproduction in Corynebacterium glutamicum
-
10.1186/1471-2180-12-198, 3598387, 22963379
-
Heider S, Peters-Wendisch P, Wendisch V. Carotenoid biosynthesis and overproduction in Corynebacterium glutamicum. BMC Microbiol 2012, 12:198. 10.1186/1471-2180-12-198, 3598387, 22963379.
-
(2012)
BMC Microbiol
, vol.12
, pp. 198
-
-
Heider, S.1
Peters-Wendisch, P.2
Wendisch, V.3
-
53
-
-
62549105255
-
MUST: a system for identification of miniature inverted-repeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi
-
10.1016/j.gene.2009.01.019, 19393167
-
Chen Y, Zhou F, Li G, Xu Y. MUST: a system for identification of miniature inverted-repeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi. Gene 2009, 436:1-7. 10.1016/j.gene.2009.01.019, 19393167.
-
(2009)
Gene
, vol.436
, pp. 1-7
-
-
Chen, Y.1
Zhou, F.2
Li, G.3
Xu, Y.4
-
54
-
-
34547299728
-
Genomic plasticity in prokaryotes: the case of the square haloarchaeon
-
10.1038/ismej.2007.35, 18043634
-
Cuadros-Orellana S, Martin-Cuadrado A-B, Legault B, D'Auria G, Zhaxybayeva O, Papke RT, Rodriguez-Valera F. Genomic plasticity in prokaryotes: the case of the square haloarchaeon. ISME J 2007, 1:235-245. 10.1038/ismej.2007.35, 18043634.
-
(2007)
ISME J
, vol.1
, pp. 235-245
-
-
Cuadros-Orellana, S.1
Martin-Cuadrado, A.-B.2
Legault, B.3
D'Auria, G.4
Zhaxybayeva, O.5
Papke, R.T.6
Rodriguez-Valera, F.7
-
55
-
-
79959307357
-
Haloquadratum walsbyi: limited diversity in a global pond
-
10.1371/journal.pone.0020968, 3119063, 21701686
-
Dyall-Smith ML, Pfeiffer F, Klee K, Palm P, Gross K, Schuster SC, Rampp M, Oesterhelt D. Haloquadratum walsbyi: limited diversity in a global pond. PLoS ONE 2011, 6:e20968. 10.1371/journal.pone.0020968, 3119063, 21701686.
-
(2011)
PLoS ONE
, vol.6
-
-
Dyall-Smith, M.L.1
Pfeiffer, F.2
Klee, K.3
Palm, P.4
Gross, K.5
Schuster, S.C.6
Rampp, M.7
Oesterhelt, D.8
-
56
-
-
84874400864
-
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea
-
10.1073/pnas.1209119109, 3528564, 23184964
-
Nelson-Sathi S, Dagan T, Landan G, Janssen A, Steel M, McInerney JO, Deppenmeier U, Martin WF. Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proc Natl Acad Sci 2012, 109:20537-20542. 10.1073/pnas.1209119109, 3528564, 23184964.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 20537-20542
-
-
Nelson-Sathi, S.1
Dagan, T.2
Landan, G.3
Janssen, A.4
Steel, M.5
McInerney, J.O.6
Deppenmeier, U.7
Martin, W.F.8
-
57
-
-
0004741270
-
Isolation of extreme halophiles from seawater
-
243452, 16345409
-
Rodriguez-Valera F, Ruiz-Berraquero F, Ramos-Cormenzana A. Isolation of extreme halophiles from seawater. Appl Environ Microbiol 1979, 38:164-165. 243452, 16345409.
-
(1979)
Appl Environ Microbiol
, vol.38
, pp. 164-165
-
-
Rodriguez-Valera, F.1
Ruiz-Berraquero, F.2
Ramos-Cormenzana, A.3
-
58
-
-
0026805942
-
Rapid isolation of genomic DNA from Gram-negative bacteria
-
Neumann B, Pospiech A, Schairer HU. Rapid isolation of genomic DNA from Gram-negative bacteria. Trends Genet 1992, 8:332-333.
-
(1992)
Trends Genet
, vol.8
, pp. 332-333
-
-
Neumann, B.1
Pospiech, A.2
Schairer, H.U.3
-
59
-
-
84863651532
-
Hybrid error correction and de novo assembly of single-molecule sequencing reads
-
Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Phillippy AM. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat Biotech 2012, 30:693-700.
-
(2012)
Nat Biotech
, vol.30
, pp. 693-700
-
-
Koren, S.1
Schatz, M.C.2
Walenz, B.P.3
Martin, J.4
Howard, J.T.5
Ganapathy, G.6
Wang, Z.7
Rasko, D.A.8
McCombie, W.R.9
Jarvis, E.D.10
Phillippy, A.M.11
-
61
-
-
84995948097
-
Draft genome of Spiribacter salinus M19-40, an abundant gammaproteobacterium in aquatic hypersaline environments
-
Leon MJ, Ghai R, Fernandez AB, Sanchez-Porro C, Rodriguez-Valera F, Ventosa A. Draft genome of Spiribacter salinus M19-40, an abundant gammaproteobacterium in aquatic hypersaline environments. Genome Announcements 2013, 1:1.
-
(2013)
Genome Announcements
, vol.1
, pp. 1
-
-
Leon, M.J.1
Ghai, R.2
Fernandez, A.B.3
Sanchez-Porro, C.4
Rodriguez-Valera, F.5
Ventosa, A.6
-
62
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT
-
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 1999, 41:95-98.
-
(1999)
Nucleic Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
63
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
10.1016/S0168-9525(00)02024-2, 10827456
-
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet 2000, 16:276-277. 10.1016/S0168-9525(00)02024-2, 10827456.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
64
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
10.1093/bioinformatics/16.10.944, 11120685
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. Artemis: sequence visualization and annotation. Bioinformatics 2000, 16:944-945. 10.1093/bioinformatics/16.10.944, 11120685.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
65
-
-
24044433279
-
ACT: the Artemis comparison tool
-
10.1093/bioinformatics/bti553, 15976072
-
Carver TJ, Rutherford KM, Berriman M, Rajandream M-A, Barrell BG, Parkhill J. ACT: the Artemis comparison tool. Bioinformatics 2005, 21:3422-3423. 10.1093/bioinformatics/bti553, 15976072.
-
(2005)
Bioinformatics
, vol.21
, pp. 3422-3423
-
-
Carver, T.J.1
Rutherford, K.M.2
Berriman, M.3
Rajandream, M.-A.4
Barrell, B.G.5
Parkhill, J.6
-
66
-
-
33846040629
-
TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels
-
10.1093/nar/gkl925, 1747178, 17135193
-
Ren Q, Chen K, Paulsen IT. TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels. Nucleic Acids Res 2007, 35:D274-D279. 10.1093/nar/gkl925, 1747178, 17135193.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Ren, Q.1
Chen, K.2
Paulsen, I.T.3
-
67
-
-
29244447181
-
Kalign - an accurate and fast multiple sequence alignment algorithm
-
Lassmann T, Sonnhammer E. Kalign - an accurate and fast multiple sequence alignment algorithm. BMC Bioinforma 2005, 6:298.
-
(2005)
BMC Bioinforma
, vol.6
, pp. 298
-
-
Lassmann, T.1
Sonnhammer, E.2
-
68
-
-
77949718257
-
FastTree 2 - approximately maximum-likelihood trees for large alignments
-
10.1371/journal.pone.0009490, 2835736, 20224823
-
Price MN, Dehal PS, Arkin AP. FastTree 2 - approximately maximum-likelihood trees for large alignments. PLoS ONE 2010, 5:e9490. 10.1371/journal.pone.0009490, 2835736, 20224823.
-
(2010)
PLoS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
69
-
-
72749109806
-
Reconstitution of Gloeobacter violaceus rhodopsin with a light-harvesting carotenoid antenna
-
10.1021/bi901552x, 2795404, 19842712
-
Imasheva ES, Balashov SP, Choi AR, Jung K-H, Lanyi JK. Reconstitution of Gloeobacter violaceus rhodopsin with a light-harvesting carotenoid antenna. Biochemistry 2009, 48:10948-10955. 10.1021/bi901552x, 2795404, 19842712.
-
(2009)
Biochemistry
, vol.48
, pp. 10948-10955
-
-
Imasheva, E.S.1
Balashov, S.P.2
Choi, A.R.3
Jung, K.-H.4
Lanyi, J.K.5
|