Extremely halophilic denitrifying bacteria from hypersaline inland lakes, Halovibrio denitrificans sp nov. and Halospina denitrificans gen. nov., sp. nov., and evidence that the genus name Halovibrio Fendrich 1989 with the type species Halovibrio variabilis should be associated with DSM 3050

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 2, 2006, Pages 379-388

  Sorokin, D Yu ^a,b   Tourova, T P ^a   Galinski, E A ^c   Belloch, C ^d,e   Tindall, B J ^d  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

^b DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^c UNIVERSITY OF BONN   (Germany)

^d LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^e INSTITUTO DE AGROQUÍMICA Y TECNOLOGÍA DE ALIMENTOS CSIC   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

NITRATE; RNA 16S; SODIUM CHLORIDE;

ARTICLE; BACTERIAL CELL; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; GAMMAPROTEOBACTERIA; HALOPHILIC BACTERIUM; HALOSPINA DENITRIFICANS; HALOVIBRIO DENITRIFICANS; HALOVIBRIO VARIABILIS; LAKE; NEW GENUS; NEW SPECIES; NOMENCLATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; PSEUDOMONAS; RNA SEQUENCE; SEQUENCE ANALYSIS; SPECIES DIFFERENCE;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; FRESH WATER; GAMMAPROTEOBACTERIA; GENES, RRNA; GEOLOGIC SEDIMENTS; HALOMONAS; MOLECULAR SEQUENCE DATA; NITRATES; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; HALOMONAS; HALOMONAS VARIABILIS; PSEUDOMONAS; PSEUDOMONAS HALOPHILA; VIBRIO;

EID: 33244486516     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63964-0     Document Type: Article

References (39)

1. Anzai, Y., Kim, H., Park, J.-Y., Wakabayashi, H. & Oyaizu, H. (2000). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50, 1563-1589.
2. Baik, K. S., Seong, C. N., Kim, E. M., Yi, H., Bae, K. S. & Chun, J. (2005). Hahella ganghwensis sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 55, 681-684.
3. Clifford, D. & Liu, X. (1993). Ion exchange for nitrate removal. AWWA J 85, 135-142.
4. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-140.
5. Dobson, S. J. & Franzmann, P. D. (1996). Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae. Int J Syst Bacteriol 46, 550-558.
6. Dobson, S. J., McMeekin, T. A. & Franzmann, P. D. (1993). Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio. Int J Syst Bacteriol 43, 665-673.
7. Felsenstein, J. (1989). PHYLIP - phylogenetic inference package (version 3.2). Cladistics 5, 164-166.
8. Fendrich, C. (1988). Halovibrio variabilis gen. nov. sp. nov., Pseudomonas halophila sp. nov. and new halophilic aerobic coccoid Eubacterium from Great Salt Lake, Utah, USA. Syst Appl Microbiol 11, 36-43.
9. Franzmann, P. D. & Tindall, B. J. (1990). A chemotaxonomic study of members of the family Halomonadaceae. Syst Appl Microbiol 13, 142-147.
10. Galinski, E. A. (1995). Osmoadaptation in bacteria. Adv Microb Physiol 37, 272-328.
11. Galinski, E. A. & Herzog, R. M. (1990). The role of trehalose as a substitute for nitrogen-containing compatible solutes (Ectothiorhodospira halochloris). Arch Microbiol 153, 607-613.
12. Garriga, M., Ehrmann, M. A., Arnau, J., Hugas, M. & Vogel, R. F. (1998). Carnimonas nigrificans gen. nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products. Int J Syst Bacteriol 48, 677-686.
13. Gorshkova, N. M., Ivanova, E. P., Sergeev, A. F., Zhukova, N. V., Alexeeva, Y., Wright, J. P., Nicolau, D. V., Mikhailov, V. V. & Christen, R. (2003). Marinobacter excellens sp. nov., isolated from sediments of the Sea of Japan. Int J Syst Evol Microbiol 53, 2073-2078.
14. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
15. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Braker, G. & Hirsch, P. (1998). Antarctobacter heliothermus gen. nov., sp. nov., a budding bacterium from hypersaline and heliothermal Ekho Lake. Int J Syst Bacteriol 48, 1363-1372.
16. Lapage, S. P., Sneath, P. H. A., Lessel, E. F., Skerman, V. B. D., Seeliger, H. P. R. & Clark, W. A. (editors) (1992). International Code of Nomenclature of Bacteria (1990 Revision): Bacteriological Code. Washington, DC: American Society for Microbiology.
17. Lee, H. K., Chun, J., Moon, E. Y., Ko, S.-H., Lee, D.-S., Lee, H. S. & Bae, K. S. (2001). Hahella chejuensis gen. nov., sp. nov., an extracellular-polysaccharide-producing marine bacterium. Int J Syst Evol Microbiol 51, 661-666.
18. Liu, C. & Shao, Z. (2005). Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55, 1181-1186.
19. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
20. Okamoto, T., Taguchi, H., Nakamura, K., Ikenaga, H., Kuraishi, H. & Yamasato, K. (1993). Zymobacter palmae gen. nov., sp. nov., a new ethanol-fermenting peritrichous bacterium isolated from palm sap. Arch Microbiol 160, 333-337.
21. Oren, A. (2002). Halophilic Microorganisms and their Environments. Dordrecht: Kluwer Academic.
22. 12 - bedürfnis phototropher Schwefel bacterien. Arch Microbiol 55, 245-256 (in German).
23. Romanenko, L. A., Schumann, P., Rohde, M., Zhukova, N. V., Mikhailov, V. V. & Stackebrandt, E. (2005). Marinobacter bryozoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environment. Int J Syst Evol Microbiol 55, 143-148.
24. Sorokin, D. Yu. & Tindall, B. J. (2006). The status of the genus name Halovibrio Fendrich 1989 and the identity of the strains Pseudomonas halophila DSM 3050 and Halomonas variabilis DSM 3051. Request for an Opinion. Int J Syst Evol Microbiol 56, 487-489.
25. Sorokin, D. Yu., Kuenen, J. G. & Jetten, M. S. M. (2001). Denitrification at extremely high pH values by the alkaliphilic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium Thioalkalivibrio denitrificans strain ALJD. Arch Microbiol 175, 94-101.
26. Spröer, C., Lang, E., Hobeck, P., Burghardt, J., Stackebrandt, E. & Tindall, B. J. (1998). Transfer of Pseudomonas nautica to Marinobacter hydrocarbonoclasticus. Int J Syst Bacteriol 48, 1445-1448.
27. Strömpl, C., Tindall, B. J., Jarvis, G. N., Lünsdorf, H., Moore, E. R. B. & Hippe, H. (1999). A re-evaluation of the taxonomy of the genus Anaerovibrio, with the reclassification of Anaerovibrio glycerini as Anaerosinus glycerini gen. nov., comb. nov., and Anaerovibrio burkinabensis as Anaeroarcus burkinabensis [corrig.] gen. nov., comb. nov. Int J Syst Bacteriol 49, 1861-1872.
28. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
29. Tindall, B. J. (1994). Chemical analysis of archaea and bacteria: a critical evaluation of its use in taxonomy and identification. In Bacterial Diversity and Systematics (FEMS Symposium no. 75), pp. 243-258. Edited by F. G. Priest, A. Ramos-Cormenzana & B. J. Tindall. New York: Plenum Press.
30. Vancanneyt, M., Witt, S., Abraham, W.-R., Kersters, K. & Fredrickson, H. L. (1996). Fatty acid content in whole-cell hydrolysates and phospholipid fractions of pseudomonads: a taxonomic evaluation. Syst Appl Microbiol 19, 528-540.
31. Van de Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
32. Ventosa, A., Nieto, J. J. & Oren, A. (1998). Biology of moderately halophilic aerobic bacteria. Microbiol Mol Biol Rev 62, 504-544.
33. Wilkinson, S. G. (1988). Gram-positive bacteria. In Microbial Lipids, pp. 117-201. Edited by C. Ratledge & S. G. Wilkinson. London: Academic Press.
34. Wohlfarth, A., Severin, J. & Galinski, E. A. (1990). The spectrum of compatible solutes in heterotrophic halophilic eubacteria of the family Halomonadaceae. J Gen Microbiol 136, 705-712.
35. Yakimov, M. M., Golyshin, P. N., Lang, S., Moore, E. R. B., Abraham, W.-R., Lünsdorf, H. & Timmis, K. N. (1998). Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium. Int J Syst Bacteriol 48, 339-348.
36. Yi, H., Chang, Y.-H., Oh, H. W., Bae, K. S. & Chun, J. (2003). Zooshikella ganghwensis gen. nov., sp. nov., isolated from tidal flat sediments. Int J Syst Evol Microbiol 53, 1013-1018.
37. Yoon, J.-H., Kim, I.-G., Oh, T.-K. & Park, Y.-H. (2004a). Microbulbifer maritimus sp. nov., isolated from an intertidal sediment from the Yellow Sea, Korea. Int J Syst Evol Microbiol 54, 1111-1116.
38. Yoon, J.-H., Yeo, S.-H., Kim, I.-G. & Oh, T.-K. (2004b). Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 54, 1799-1803.
39. Zumft, W. G. (1997). Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61, 533-616.