메뉴 건너뛰기




Volumn 7, Issue , 2016, Pages

Function and evolution of local repeats in the Firre locus

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FIRRE PROTEIN; LONG UNTRANSLATED RNA; MESSENGER RNA; RNA; UNCLASSIFIED DRUG; FIRRE LONG NON CODING RNA, MOUSE; LONG NONCODING RNA FIRRE, HUMAN;

EID: 84961654646     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms11021     Document Type: Article
Times cited : (64)

References (69)
  • 1
    • 84855281420 scopus 로고    scopus 로고
    • Repetitive elements may comprise over two-thirds of the human genome
    • de Koning, A. P., Gu, W., Castoe, T. A., Batzer, M. A., Pollock, D. D. Repetitive elements may comprise over two-thirds of the human genome. PLoS Genet. 7, e1002384 (2011).
    • (2011) PLoS Genet. , vol.7 , pp. e1002384
    • De Koning, A.P.1    Gu, W.2    Castoe, T.A.3    Batzer, M.A.4    Pollock, D.D.5
  • 2
    • 36249023071 scopus 로고    scopus 로고
    • A unified classification system for eukaryotic transposable elements
    • Wicker, T. et al. A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 8, 973-982 (2007).
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 973-982
    • Wicker, T.1
  • 3
    • 0018894384 scopus 로고
    • Selfish genes, the phenotype paradigm and genome evolution
    • Doolittle, W. F., Sapienza, C. Selfish genes, the phenotype paradigm and genome evolution. Nature 284, 601-603 (1980).
    • (1980) Nature , vol.284 , pp. 601-603
    • Doolittle, W.F.1    Sapienza, C.2
  • 4
    • 12344300804 scopus 로고    scopus 로고
    • Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome
    • Athanasiadis, A., Rich, A., Maas, S. Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome. PLoS Biol. 2, e391 (2004).
    • (2004) PLoS Biol. , vol.2 , pp. e391
    • Athanasiadis, A.1    Rich, A.2    Maas, S.3
  • 5
    • 84990931802 scopus 로고    scopus 로고
    • Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions
    • Kelley, D. R., Hendrickson, D. G., Tenen, D., Rinn, J. L. Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions. Genome Biol. 15, 537 (2014).
    • (2014) Genome Biol. , vol.15 , pp. 537
    • Kelley, D.R.1    Hendrickson, D.G.2    Tenen, D.3    Rinn, J.L.4
  • 6
    • 84876864345 scopus 로고    scopus 로고
    • Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
    • Kapusta, A. et al. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet. 9, e1003470 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003470
    • Kapusta, A.1
  • 7
    • 84869881863 scopus 로고    scopus 로고
    • Transposable elements reveal a stem cell-specific class of long noncoding RNAs
    • Kelley, D., Rinn, J. Transposable elements reveal a stem cell-specific class of long noncoding RNAs. Genome Biol. 13, R107 (2012).
    • (2012) Genome Biol. , vol.13 , pp. R107
    • Kelley, D.1    Rinn, J.2
  • 8
    • 84870998415 scopus 로고    scopus 로고
    • Genomic impact of eukaryotic transposable elements
    • Arkhipova, I. R. et al. Genomic impact of eukaryotic transposable elements. Mob DNA 3, 19 (2012).
    • (2012) Mob DNA , vol.3 , pp. 19
    • Arkhipova, I.R.1
  • 9
    • 34250776711 scopus 로고    scopus 로고
    • A family of human microRNA genes from miniature inverted-repeat transposable elements
    • Piriyapongsa, J., Jordan, I. K. A family of human microRNA genes from miniature inverted-repeat transposable elements. PLoS ONE 2, e203 (2007).
    • (2007) PLoS ONE , vol.2 , pp. e203
    • Piriyapongsa, J.1    Jordan, I.K.2
  • 10
    • 70350231929 scopus 로고    scopus 로고
    • Marsupial-specific microRNAs evolved from marsupial-specific transposable elements
    • Devor, E. J., Peek, A. S., Lanier, W., Samollow, P. B. Marsupial-specific microRNAs evolved from marsupial-specific transposable elements. Gene 448, 187-191 (2009).
    • (2009) Gene , vol.448 , pp. 187-191
    • Devor, E.J.1    Peek, A.S.2    Lanier, W.3    Samollow, P.B.4
  • 11
    • 42349096534 scopus 로고    scopus 로고
    • Transposable elements and the evolution of regulatory networks
    • Feschotte, C. Transposable elements and the evolution of regulatory networks. Nat. Rev. Genet. 9, 397-405 (2008).
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 397-405
    • Feschotte, C.1
  • 12
    • 84863393570 scopus 로고    scopus 로고
    • Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
    • Schmidt, D. et al. Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell 148, 335-348 (2012).
    • (2012) Cell , vol.148 , pp. 335-348
    • Schmidt, D.1
  • 13
    • 36749061982 scopus 로고    scopus 로고
    • Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53
    • Wang, T. et al. Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proc. Natl Acad. Sci. USA 104, 18613-18618 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 18613-18618
    • Wang, T.1
  • 14
    • 77954100084 scopus 로고    scopus 로고
    • Transposable elements have rewired the core regulatory network of human embryonic stem cells
    • Kunarso, G. et al. Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nature Genet. 42, 631-634 (2010).
    • (2010) Nature Genet. , vol.42 , pp. 631-634
    • Kunarso, G.1
  • 15
    • 57049118443 scopus 로고    scopus 로고
    • Analysis of the largest tandemly repeated DNA families in the human genome
    • Warburton, P. E. et al. Analysis of the largest tandemly repeated DNA families in the human genome. BMC Genomics 9, 533 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 533
    • Warburton, P.E.1
  • 16
    • 0033151949 scopus 로고    scopus 로고
    • A fast algorithm for genomewide analysis of proteins with repeated sequences
    • Pellegrini, M., Marcotte, E. M., Yeates, T. O. A fast algorithm for genomewide analysis of proteins with repeated sequences. Proteins 35, 440-446 (1999).
    • (1999) Proteins , vol.35 , pp. 440-446
    • Pellegrini, M.1    Marcotte, E.M.2    Yeates, T.O.3
  • 17
    • 67249104052 scopus 로고    scopus 로고
    • RNA transcripts, miRNA-sized fragments and proteins produced from D4Z4 units: New candidates for the pathophysiology of facioscapulohumeral dystrophy
    • Snider, L. et al. RNA transcripts, miRNA-sized fragments and proteins produced from D4Z4 units: new candidates for the pathophysiology of facioscapulohumeral dystrophy. Hum. Mol. Genet. 18, 2414-2430 (2009).
    • (2009) Hum. Mol. Genet. , vol.18 , pp. 2414-2430
    • Snider, L.1
  • 18
    • 27744570711 scopus 로고    scopus 로고
    • Mammalian BEX WEX and GASP genes: Coding and non-coding chimaerism sustained by gene conversion events
    • Winter, E. E., Ponting, C. P. Mammalian BEX, WEX and GASP genes: coding and non-coding chimaerism sustained by gene conversion events. BMC Evol. Biol. 5, 54 (2005).
    • (2005) BMC Evol. Biol. , vol.5 , pp. 54
    • Winter, E.E.1    Ponting, C.P.2
  • 19
    • 48949102889 scopus 로고    scopus 로고
    • DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts
    • Chadwick, B. P. DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts. Genome Res. 18, 1259-1269 (2008).
    • (2008) Genome Res. , vol.18 , pp. 1259-1269
    • Chadwick, B.P.1
  • 20
    • 80052423475 scopus 로고    scopus 로고
    • XIST RNA and architecture of the inactive X chromosome: Implications for the repeat genome
    • Hall, L. L., Lawrence, J. B. XIST RNA and architecture of the inactive X chromosome: implications for the repeat genome. Cold Spring Harb. Symp. Quant. Biol. 75, 345-356 (2010).
    • (2010) Cold Spring Harb. Symp. Quant. Biol. , vol.75 , pp. 345-356
    • Hall, L.L.1    Lawrence, J.B.2
  • 21
    • 80054719512 scopus 로고    scopus 로고
    • The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization
    • Duszczyk, M. M., Wutz, A., Rybin, V., Sattler, M. The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization. RNA 17, 1973-1982 (2011).
    • (2011) RNA , vol.17 , pp. 1973-1982
    • Duszczyk, M.M.1    Wutz, A.2    Rybin, V.3    Sattler, M.4
  • 22
    • 79959948197 scopus 로고    scopus 로고
    • YY1 tethers Xist RNA to the inactive X nucleation center
    • Jeon, Y., Lee, J. T. YY1 tethers Xist RNA to the inactive X nucleation center. Cell 146, 119-133 (2011).
    • (2011) Cell , vol.146 , pp. 119-133
    • Jeon, Y.1    Lee, J.T.2
  • 23
    • 78650675579 scopus 로고    scopus 로고
    • Locked nucleic acids (LNAs) reveal sequence requirements and kinetics of Xist RNA localization to the X chromosome
    • Sarma, K., Levasseur, P., Aristarkhov, A., Lee, J. T. Locked nucleic acids (LNAs) reveal sequence requirements and kinetics of Xist RNA localization to the X chromosome. Proc. Natl Acad. Sci. USA 107, 22196-22201 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 22196-22201
    • Sarma, K.1    Levasseur, P.2    Aristarkhov, A.3    Lee, J.T.4
  • 24
    • 0036479009 scopus 로고    scopus 로고
    • Chromosomal silencing and localization are mediated by different domains of Xist RNA
    • Wutz, A., Rasmussen, T. P., Jaenisch, R. Chromosomal silencing and localization are mediated by different domains of Xist RNA. Nature Genet. 30, 167-174 (2002).
    • (2002) Nature Genet. , vol.30 , pp. 167-174
    • Wutz, A.1    Rasmussen, T.P.2    Jaenisch, R.3
  • 25
    • 55349109963 scopus 로고    scopus 로고
    • Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
    • Zhao, J., Sun, B. K., Erwin, J. A., Song, J. J., Lee, J. T. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 322, 750-756 (2008).
    • (2008) Science , vol.322 , pp. 750-756
    • Zhao, J.1    Sun, B.K.2    Erwin, J.A.3    Song, J.J.4    Lee, J.T.5
  • 26
    • 9144233713 scopus 로고    scopus 로고
    • Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila
    • Costas, J., Vieira, C. P., Casares, F., Vieira, J. Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila. BMC Genomics 4, 52 (2003).
    • (2003) BMC Genomics , vol.4 , pp. 52
    • Costas, J.1    Vieira, C.P.2    Casares, F.3    Vieira, J.4
  • 27
    • 84893767092 scopus 로고    scopus 로고
    • Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre
    • Hacisuleyman, E. et al. Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre. Nat. Struct. Mol. Biol. 21, 198-206 (2014).
    • (2014) Nat. Struct. Mol. Biol. , vol.21 , pp. 198-206
    • Hacisuleyman, E.1
  • 28
    • 84867116639 scopus 로고    scopus 로고
    • The macrosatellite DXZ4 mediates CTCF-dependent longrange intrachromosomal interactions on the human inactive X chromosome
    • Horakova, A. H., Moseley, S. C., McLaughlin, C. R., Tremblay, D. C., Chadwick, B. P. The macrosatellite DXZ4 mediates CTCF-dependent longrange intrachromosomal interactions on the human inactive X chromosome. Hum. Mol. Genet. 21, 4367-4377 (2012).
    • (2012) Hum. Mol. Genet. , vol.21 , pp. 4367-4377
    • Horakova, A.H.1    Moseley, S.C.2    McLaughlin, C.R.3    Tremblay, D.C.4    Chadwick, B.P.5
  • 29
    • 84908145469 scopus 로고    scopus 로고
    • Differentially methylated CpG island within human XIST mediates alternative P2 transcription and YY1 binding
    • Chapman, A. G., Cotton, A. M., Kelsey, A. D., Brown, C. J. Differentially methylated CpG island within human XIST mediates alternative P2 transcription and YY1 binding. BMC Genet. 15, 89 (2014).
    • (2014) BMC Genet. , vol.15 , pp. 89
    • Chapman, A.G.1    Cotton, A.M.2    Kelsey, A.D.3    Brown, C.J.4
  • 30
    • 84857864826 scopus 로고    scopus 로고
    • YY1 associates with the macrosatellite DXZ4 on the inactive X chromosome and binds with CTCF to a hypomethylated form in some male carcinomas
    • Moseley, S. C. et al. YY1 associates with the macrosatellite DXZ4 on the inactive X chromosome and binds with CTCF to a hypomethylated form in some male carcinomas. Nucleic Acids Res. 40, 1596-1608 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. 1596-1608
    • Moseley, S.C.1
  • 31
    • 84936091491 scopus 로고    scopus 로고
    • Landscape of DNA methylation on the X chromosome reflects CpG density, functional chromatin state and X-chromosome inactivation
    • Cotton, A. M. et al. Landscape of DNA methylation on the X chromosome reflects CpG density, functional chromatin state and X-chromosome inactivation. Hum. Mol. Genet. 24, 1528-1539 (2015).
    • (2015) Hum. Mol. Genet. , vol.24 , pp. 1528-1539
    • Cotton, A.M.1
  • 32
    • 84894051999 scopus 로고    scopus 로고
    • Spread of X-chromosome inactivation into autosomal sequences: Role for DNA elements, chromatin features and chromosomal domains
    • Cotton, A. M. et al. Spread of X-chromosome inactivation into autosomal sequences: role for DNA elements, chromatin features and chromosomal domains. Hum. Mol. Genet. 23, 1211-1223 (2014).
    • (2014) Hum. Mol. Genet. , vol.23 , pp. 1211-1223
    • Cotton, A.M.1
  • 33
    • 84949085429 scopus 로고    scopus 로고
    • Two novel DXZ4-associated long noncoding RNAs show developmental changes in expression coincident with heterochromatin formation at the human (Homo sapiens) macrosatellite repeat
    • Figueroa, D. M., Darrow, E. M., Chadwick, B. P. Two novel DXZ4-associated long noncoding RNAs show developmental changes in expression coincident with heterochromatin formation at the human (Homo sapiens) macrosatellite repeat. Chromosome Res. 23, 733-752 (2015).
    • (2015) Chromosome Res. , vol.23 , pp. 733-752
    • Figueroa, D.M.1    Darrow, E.M.2    Chadwick, B.P.3
  • 34
    • 84906057642 scopus 로고    scopus 로고
    • A region of euchromatin coincides with an extensive tandem repeat on the mouse (Mus musculus) inactive X chromosome
    • Darrow, E. M. et al. A region of euchromatin coincides with an extensive tandem repeat on the mouse (Mus musculus) inactive X chromosome. Chromosome Res. 22, 335-350 (2014).
    • (2014) Chromosome Res. , vol.22 , pp. 335-350
    • Darrow, E.M.1
  • 35
    • 79953884651 scopus 로고    scopus 로고
    • Characterization of DXZ4 conservation in primates implies important functional roles for CTCF binding, array expression and tandem repeat organization on the X chromosome
    • McLaughlin, C. R., Chadwick, B. P. Characterization of DXZ4 conservation in primates implies important functional roles for CTCF binding, array expression and tandem repeat organization on the X chromosome. Genome Biol. 12, R37 (2011).
    • (2011) Genome Biol. , vol.12 , pp. R37
    • McLaughlin, C.R.1    Chadwick, B.P.2
  • 37
    • 84939483651 scopus 로고    scopus 로고
    • Bipartite structure of the inactive mouse X chromosome
    • Deng, X. et al. Bipartite structure of the inactive mouse X chromosome. Genome Biol. 16, 152 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 152
    • Deng, X.1
  • 38
    • 70450224476 scopus 로고    scopus 로고
    • Macrosatellite epigenetics: The two faces of DXZ4 and D4Z4
    • Chadwick, B. P. Macrosatellite epigenetics: the two faces of DXZ4 and D4Z4. Chromosoma 118, 675-681 (2009).
    • (2009) Chromosoma , vol.118 , pp. 675-681
    • Chadwick, B.P.1
  • 39
    • 84919949716 scopus 로고    scopus 로고
    • A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
    • Rao, S. S. et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159, 1665-1680 (2014).
    • (2014) Cell , vol.159 , pp. 1665-1680
    • Rao, S.S.1
  • 40
    • 84938412430 scopus 로고    scopus 로고
    • The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation
    • Yang, F. et al. The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation. Genome Biol. 16, 52 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 52
    • Yang, F.1
  • 41
    • 84961575727 scopus 로고    scopus 로고
    • Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions
    • Sheffield, N. C. et al. Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions. Genome Res. 24, 1224-1235 (2014).
    • (2014) Genome Res. , vol.24 , pp. 1224-1235
    • Sheffield, N.C.1
  • 42
    • 84874500772 scopus 로고    scopus 로고
    • Long noncoding RNAs regulate adipogenesis
    • Sun, L. et al. Long noncoding RNAs regulate adipogenesis. Proc. Natl Acad. Sci. USA 110, 3387-3392 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 3387-3392
    • Sun, L.1
  • 43
    • 84911373046 scopus 로고    scopus 로고
    • Xq26.1-26.2 gain identified on array comparative genomic hybridization in bilateral periventricular nodular heterotopia with overlying polymicrogyria
    • Abe, Y. et al. Xq26.1-26.2 gain identified on array comparative genomic hybridization in bilateral periventricular nodular heterotopia with overlying polymicrogyria. Dev. Med. Child. Neurol. 56, 1221-1224 (2014).
    • (2014) Dev. Med. Child. Neurol. , vol.56 , pp. 1221-1224
    • Abe, Y.1
  • 44
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    • Derrien, T. et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 22, 1775-1789 (2012).
    • (2012) Genome Res. , vol.22 , pp. 1775-1789
    • Derrien, T.1
  • 45
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili, M. N. et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927 (2011).
    • (2011) Genes Dev. , vol.25 , pp. 1915-1927
    • Cabili, M.N.1
  • 46
    • 29144455282 scopus 로고    scopus 로고
    • De novo identification of repeat families in large genomes
    • Price, A. L., Jones, N. C., Pevzner, P. A. De novo identification of repeat families in large genomes. Bioinformatics 21, i351-i358 (2005).
    • (2005) Bioinformatics , vol.21 , pp. i351-i358
    • Price, A.L.1    Jones, N.C.2    Pevzner, P.A.3
  • 47
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson, G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27, 573-580 (1999).
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 48
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh, K., Misawa, K., Kuma, K., Miyata, T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30, 3059-3066 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 49
    • 85003047870 scopus 로고    scopus 로고
    • Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements
    • Ellison, C. E., Bachtrog, D. Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements. Elife. doi:10.7554/eLife.05899 (2015).
    • (2015) Elife
    • Ellison, C.E.1    Bachtrog, D.2
  • 50
    • 70349667200 scopus 로고    scopus 로고
    • Fast mapping of short sequences with mismatches, insertions and deletions using index structures
    • Hoffmann, S. et al. Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput. Biol. 5, e1000502 (2009).
    • (2009) PLoS Comput. Biol. , vol.5 , pp. e1000502
    • Hoffmann, S.1
  • 51
    • 0347125328 scopus 로고    scopus 로고
    • JASPAR: An open-access database for eukaryotic transcription factor binding profiles
    • Sandelin, A., Alkema, W., Engstrom, P., Wasserman, W. W., Lenhard, B. JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res. 32, D91-D94 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. D91-D94
    • Sandelin, A.1    Alkema, W.2    Engstrom, P.3    Wasserman, W.W.4    Lenhard, B.5
  • 52
    • 33750959240 scopus 로고    scopus 로고
    • Fast index based algorithms and software for matching position specific scoring matrices
    • Beckstette, M., Homann, R., Giegerich, R., Kurtz, S. Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7, 389 (2006).
    • (2006) BMC Bioinformatics , vol.7 , pp. 389
    • Beckstette, M.1    Homann, R.2    Giegerich, R.3    Kurtz, S.4
  • 53
    • 79959354832 scopus 로고    scopus 로고
    • CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells
    • Degner, S. C. et al. CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells. Proc. Natl Acad. Sci. USA 108, 9566-9571 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 9566-9571
    • Degner, S.C.1
  • 54
    • 38849121606 scopus 로고    scopus 로고
    • Cohesins functionally associate with CTCF on mammalian chromosome arms
    • Parelho, V. et al. Cohesins functionally associate with CTCF on mammalian chromosome arms. Cell 132, 422-433 (2008).
    • (2008) Cell , vol.132 , pp. 422-433
    • Parelho, V.1
  • 55
    • 84899415536 scopus 로고    scopus 로고
    • CTCF: An architectural protein bridging genome topology and function
    • Ong, C. T., Corces, V. G. CTCF: an architectural protein bridging genome topology and function. Nat. Rev. Genet. 15, 234-246 (2014).
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 234-246
    • Ong, C.T.1    Corces, V.G.2
  • 56
    • 84902212007 scopus 로고    scopus 로고
    • The 3D genome in transcriptional regulation and pluripotency
    • Gorkin, D. U., Leung, D., Ren, B. The 3D genome in transcriptional regulation and pluripotency. Cell Stem Cell 14, 762-775 (2014).
    • (2014) Cell Stem Cell , vol.14 , pp. 762-775
    • Gorkin, D.U.1    Leung, D.2    Ren, B.3
  • 57
    • 46149113242 scopus 로고    scopus 로고
    • CTCF physically links cohesin to chromatin
    • Rubio, E. D. et al. CTCF physically links cohesin to chromatin. Proc. Natl Acad. Sci. USA 105, 8309-8314 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 8309-8314
    • Rubio, E.D.1
  • 58
    • 84939171986 scopus 로고    scopus 로고
    • Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
    • Cabili, M. N. et al. Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution. Genome Biol. 16, 20 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 20
    • Cabili, M.N.1
  • 60
    • 84922115236 scopus 로고    scopus 로고
    • Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells
    • Wang, J. et al. Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells. Nature 516, 405-409 (2014).
    • (2014) Nature , vol.516 , pp. 405-409
    • Wang, J.1
  • 61
    • 78649467088 scopus 로고    scopus 로고
    • Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
    • Loewer, S. et al. Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nature Genet. 42, 1113-1117 (2010).
    • (2010) Nature Genet. , vol.42 , pp. 1113-1117
    • Loewer, S.1
  • 62
    • 84901651635 scopus 로고    scopus 로고
    • Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
    • Fort, A. et al. Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance. Nature Genet. 46, 558-566 (2014).
    • (2014) Nature Genet. , vol.46 , pp. 558-566
    • Fort, A.1
  • 63
    • 84898010302 scopus 로고    scopus 로고
    • The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
    • Lu, X. et al. The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity. Nat. Struct. Mol. Biol. 21, 423-425 (2014).
    • (2014) Nat. Struct. Mol. Biol. , vol.21 , pp. 423-425
    • Lu, X.1
  • 64
    • 77956607961 scopus 로고    scopus 로고
    • The matrix protein hnRNPU is required for chromosomal localization of Xist RNA
    • Hasegawa, Y. et al. The matrix protein hnRNPU is required for chromosomal localization of Xist RNA. Dev. Cell 19, 469-476 (2010).
    • (2010) Dev. Cell , vol.19 , pp. 469-476
    • Hasegawa, Y.1
  • 65
    • 34547627357 scopus 로고    scopus 로고
    • CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex
    • Holohan, E. E. et al. CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex. PLoS Genet. 3, e112 (2007).
    • (2007) PLoS Genet. , vol.3 , pp. e112
    • Holohan, E.E.1
  • 66
    • 39149121436 scopus 로고    scopus 로고
    • Cohesin mediates transcriptional insulation by CCCTC-binding factor
    • Wendt, K. S. et al. Cohesin mediates transcriptional insulation by CCCTC-binding factor. Nature 451, 796-801 (2008).
    • (2008) Nature , vol.451 , pp. 796-801
    • Wendt, K.S.1
  • 67
    • 84859916280 scopus 로고    scopus 로고
    • Effects of sequence variation on different allelic transcription factor occupancy and gene expression
    • Reddy, T. E. Effects of sequence variation on different allelic transcription factor occupancy and gene expression. Genome Res. 22, 860-869 (2012).
    • (2012) Genome Res. , vol.22 , pp. 860-869
    • Reddy, T.E.1
  • 68
    • 84865051224 scopus 로고    scopus 로고
    • The mouse DXZ4 homolog retains Ctcf binding and proximity to Pls3 despite substantial organizational differences compared to the primate macrosatellite
    • Horakova, A. H. et al. The mouse DXZ4 homolog retains Ctcf binding and proximity to Pls3 despite substantial organizational differences compared to the primate macrosatellite. Genome Biol. 13, R70 (2012).
    • (2012) Genome Biol. , vol.13 , pp. R70
    • Horakova, A.H.1
  • 69
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 (1987).
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.