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Volumn 9, Issue , 2008, Pages

Analysis of the largest tandemly repeated DNA families in the human genome

Author keywords

[No Author keywords available]

Indexed keywords

DNA; SATELLITE DNA;

EID: 57049118443     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-533     Document Type: Article
Times cited : (119)

References (43)
  • 1
    • 33847059221 scopus 로고    scopus 로고
    • Centromere assembly and propagation
    • 10.1016/j.cell.2007.02.002 17320502
    • Morris CA Moazed D Centromere assembly and propagation Cell 2007, 128(4):647-650. 10.1016/j.cell.2007.02.002 17320502
    • (2007) Cell , vol.128 , Issue.4 , pp. 647-650
    • Morris, C.A.1    Moazed, D.2
  • 2
    • 0036682518 scopus 로고    scopus 로고
    • Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation
    • 186425 10.1101/gad.1006702
    • Stam M Belele C Dorweiler JE Chandler VL Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation Genes Dev 2002, 16(15):1906-1918. 186425 12154122 10.1101/gad.1006702
    • (2002) Genes Dev , vol.16 , Issue.15 , pp. 1906-1918
    • Stam, M.1    Belele, C.2    Dorweiler, J.E.3    Chandler, V.L.4
  • 4
    • 33751045998 scopus 로고    scopus 로고
    • Two-step recruitment of RNA-directed DNA methylation to tandem repeats
    • 1618421 10.1371/journal.pbio.0040363
    • Chan SW Zhang X Bernatavichute YV Jacobsen SE Two-step recruitment of RNA-directed DNA methylation to tandem repeats PLoS Biol 2006, 4(11):e363. 1618421 17105345 10.1371/journal.pbio.0040363
    • (2006) PLoS Biol , vol.4 , Issue.11
    • Chan, S.W.1    Zhang, X.2    Bernatavichute, Y.V.3    Jacobsen, S.E.4
  • 5
    • 0242298325 scopus 로고    scopus 로고
    • Maintenance of heterochromatin by RNA interference of tandem repeats
    • 10.1038/ng1252 14593407
    • Martienssen RA Maintenance of heterochromatin by RNA interference of tandem repeats Nat Genet 2003, 35(3):213-214. 10.1038/ng1252 14593407
    • (2003) Nat Genet , vol.35 , pp. 213-214
    • Martienssen, R.A.1
  • 6
    • 33846070952 scopus 로고    scopus 로고
    • TRDB-the Tandem Repeats Database
    • (Database). 1781109 17175540 10.1093/nar/gkl1013
    • Gelfand Y Rodriguez A Benson G TRDB-the Tandem Repeats Database Nucleic Acids Res 2007, 35(Database):80-87. 1781109 17175540 10.1093/nar/gkl1013
    • (2007) Nucleic Acids Res
    • Gelfand, Y.1    Rodriguez, A.2    Benson, G.3
  • 7
    • 52049100082 scopus 로고    scopus 로고
    • Comparative analyses of human single- and multilocus tandem repeats
    • 2475761
    • Ames D Murphy N Helentjaris T Sun N Chandler V Comparative analyses of human single- and multilocus tandem repeats Genetics 2008, 179(3):1693-1704. 2475761 18562644 10.1534/genetics.108.087882
    • (2008) Genetics , vol.179 , Issue.3 , pp. 1693-1704
    • Ames, D.1    Murphy, N.2    Helentjaris, T.3    Sun, N.4    Chandler, V.5
  • 9
    • 36749026295 scopus 로고    scopus 로고
    • DUX4, a candidate gene of facioscapulohumeral muscular dystrophy, encodes a transcriptional activator of PITX1
    • 2084313 17984056 1073/pnas.078659104
    • Dixit M Ansseau E Tassin A Winokur S Shi R Qian H Sauvage S Matteotti C van Acker AM Leo O et al DUX4, a candidate gene of facioscapulohumeral muscular dystrophy, encodes a transcriptional activator of PITX1 Proc Natl Acad Sci USA 2007, 104(46):18157-18162. 2084313 17984056 1073/ pnas.078659104
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.46 , pp. 18157-18162
    • Dixit, M.1    Ansseau, E.2    Tassin, A.3    Winokur, S.4    Shi, R.5    Qian, H.6    Sauvage, S.7    Matteotti, C.8    van Acker, A.M.9    Leo, O.10
  • 12
    • 33748292822 scopus 로고    scopus 로고
    • Human lineage-specific amplification, selection, and neuronal expression of DUF1220 domains
    • 10.1126/science.1127980 16946073
    • Popesco MC Maclaren EJ Hopkins J Dumas L Cox M Meltesen L McGavran L Wyckoff GJ Sikela JM Human lineage-specific amplification, selection, and neuronal expression of DUF1220 domains Science 2006, 313(5791):1304-1307. 10.1126/science.1127980 16946073
    • (2006) Science , vol.313 , Issue.5791 , pp. 1304-1307
    • Popesco, M.C.1    Maclaren, E.J.2    Hopkins, J.3    Dumas, L.4    Cox, M.5    Meltesen, L.6    McGavran, L.7    Wyckoff, G.J.8    Sikela, J.M.9
  • 13
    • 48949102889 scopus 로고    scopus 로고
    • DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X specific role involving CTCF and anti-sense transcripts
    • 18456864
    • Chadwick BP DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X specific role involving CTCF and anti-sense transcripts Genome Res 2008. 18456864
    • (2008) Genome Res
    • Chadwick, B.P.1
  • 14
    • 0000199459 scopus 로고    scopus 로고
    • Evolution of centromeric alpha satellite DNA: Molecular organization within and between human and primate chromosomes
    • Oxford: BIOS Scientific Publishers Jackson M, Strachan T, Dover G
    • Warburton PE Willard HF Evolution of centromeric alpha satellite DNA: molecular organization within and between human and primate chromosomes Human Genome Evolution Oxford: BIOS Scientific Publishers Jackson M, Strachan T, Dover G 1996, 121-145.
    • (1996) Human Genome Evolution , pp. 121-145
    • Warburton, P.E.1    Willard, H.F.2
  • 15
    • 30044449656 scopus 로고    scopus 로고
    • The evolutionary dynamics of alpha-satellite
    • 1356132 10.1101/gr.3810906
    • Rudd MK Wray GA Willard HF The evolutionary dynamics of alpha-satellite Genome Res 2006, 16(1):88-96. 1356132 16344556 10.1101/gr.3810906
    • (2006) Genome Res , vol.16 , Issue.1 , pp. 88-96
    • Rudd, M.K.1    Wray, G.A.2    Willard, H.F.3
  • 16
    • 0035812788 scopus 로고    scopus 로고
    • Genomic and genetic definition of a functional human centromere
    • 10.1126/science.1065042 11588252
    • Schueler MG Higgins AW Rudd MK Gustashaw K Willard HF Genomic and genetic definition of a functional human centromere Science 2001, 294(5540):109-115. 10.1126/science.1065042 11588252
    • (2001) Science , vol.294 , Issue.5540 , pp. 109-115
    • Schueler, M.G.1    Higgins, A.W.2    Rudd, M.K.3    Gustashaw, K.4    Willard, H.F.5
  • 17
    • 4744339350 scopus 로고    scopus 로고
    • Analysis of the centromeric regions of the human genome assembly
    • 10.1016/j.tig.2004.08.008 15475110
    • Rudd MK Willard HF Analysis of the centromeric regions of the human genome assembly Trends Genet 2004, 20(11):529-533. 10.1016/ j.tig.2004.08.008 15475110
    • (2004) Trends Genet , vol.20 , Issue.11 , pp. 529-533
    • Rudd, M.K.1    Willard, H.F.2
  • 18
    • 4344672526 scopus 로고    scopus 로고
    • The structure and evolution of centromeric transition regions within the human genome
    • 10.1038/nature02806 15318213
    • She X Horvath JE Jiang Z Liu G Furey TS Christ L Clark R Graves T Gulden CL Alkan C et al The structure and evolution of centromeric transition regions within the human genome Nature 2004, 430(7002):857-864. 10.1038/ nature02806 15318213
    • (2004) Nature , vol.430 , Issue.7002 , pp. 857-864
    • She, X.1    Horvath, J.E.2    Jiang, Z.3    Liu, G.4    Furey, T.S.5    Christ, L.6    Clark, R.7    Graves, T.8    Gulden, C.L.9    Alkan, C.10
  • 20
    • 0032784908 scopus 로고    scopus 로고
    • Interspersed repeats and other mementos of transposable elements in mammalian genomes
    • 10.1016/S0959-437X(99)00031-3 10607616
    • Smit AF Interspersed repeats and other mementos of transposable elements in mammalian genomes Curr Opin Genet Dev 1999, 9(6):657-663. 10.1016/ S0959-437X(99)00031-3 10607616
    • (1999) Curr Opin Genet Dev , vol.9 , pp. 657-663
    • Smit, A.F.1
  • 21
    • 42349111552 scopus 로고    scopus 로고
    • A universal classification of eukaryotic transposable elements implemented in Repbase
    • author reply 414. 10.1038/nrg2165-c1 18421312
    • Kapitonov VV Jurka J A universal classification of eukaryotic transposable elements implemented in Repbase Nat Rev Genet 2008, 9(5):411-412. author reply 414. 10.1038/nrg2165-c1 18421312
    • (2008) Nat Rev Genet , vol.9 , pp. 411-412
    • Kapitonov, V.V.1    Jurka, J.2
  • 22
    • 0022512703 scopus 로고
    • Sequence relationships of three human satellite DNAs
    • 10.1016/0022-2836(86)90224-X 3701863
    • Prosser J Frommer M Paul C Vincent PC Sequence relationships of three human satellite DNAs J Mol Biol 1986, 187(2):145-155. 10.1016/ 0022-2836(86)90224-X 3701863
    • (1986) J Mol Biol , vol.187 , pp. 145-155
    • Prosser, J.1    Frommer, M.2    Paul, C.3    Vincent, P.C.4
  • 23
    • 0023807229 scopus 로고
    • Localisation of satellite DNA sequences on human metaphase chromosomes using bromodeoxyuridine-labelled probes
    • 10.1007/BF00331790 3191792
    • Frommer M Paul C Vincent PC Localisation of satellite DNA sequences on human metaphase chromosomes using bromodeoxyuridine-labelled probes Chromosoma 1988, 97(1):11-18. 10.1007/BF00331790 3191792
    • (1988) Chromosoma , vol.97 , Issue.1 , pp. 11-18
    • Frommer, M.1    Paul, C.2    Vincent, P.C.3
  • 24
    • 0035047019 scopus 로고    scopus 로고
    • Identification and characterization of satellite III subfamilies to the acrocentric chromosomes
    • 10.1023/A:1016648404388 11330397
    • Bandyopadhyay R McQuillan C Page SL Choo KH Shaffer LG Identification and characterization of satellite III subfamilies to the acrocentric chromosomes Chromosome Res 2001, 9(3):223-233. 10.1023/A:1016648404388 11330397
    • (2001) Chromosome Res , vol.9 , Issue.3 , pp. 223-233
    • Bandyopadhyay, R.1    McQuillan, C.2    Page, S.L.3    Choo, K.H.4    Shaffer, L.G.5
  • 25
    • 0027289723 scopus 로고
    • Isolation and identification of a novel tandemly repeated DNA sequence in the centromeric region of human chromosome 8
    • 10.1007/BF00661276 7916664
    • Lin CC Sasi R Lee C Fan YS Court D Isolation and identification of a novel tandemly repeated DNA sequence in the centromeric region of human chromosome 8 Chromosoma 1993, 102(5):333-339. 10.1007/BF00661276 7916664
    • (1993) Chromosoma , vol.102 , Issue.5 , pp. 333-339
    • Lin, C.C.1    Sasi, R.2    Lee, C.3    Fan, Y.S.4    Court, D.5
  • 26
    • 0028866275 scopus 로고
    • Human gamma X satellite DNA: An X chromosome specific centromeric DNA sequence
    • 10.1007/BF00347692 8585987
    • Lee C Li X Jabs EW Court D Lin CC Human gamma X satellite DNA: An X chromosome specific centromeric DNA sequence Chromosoma 1995, 104(2):103-112. 10.1007/BF00347692 8585987
    • (1995) Chromosoma , vol.104 , Issue.2 , pp. 103-112
    • Lee, C.1    Li, X.2    Jabs, E.W.3    Court, D.4    Lin, C.C.5
  • 27
    • 0025974510 scopus 로고
    • A repeating unit of the DYZ1 family on the human Y chromosome consists of segments with partial male-specificity
    • 10.1159/000133053 2013234
    • Nakagome Y Nagafuchi S Seki S Nakahori Y Tamura T Yamada M Iwaya M A repeating unit of the DYZ1 family on the human Y chromosome consists of segments with partial male-specificity Cytogenet Cell Genet 1991, 56(2):74-77. 10.1159/000133053 2013234
    • (1991) Cytogenet Cell Genet , vol.56 , Issue.2 , pp. 74-77
    • Nakagome, Y.1    Nagafuchi, S.2    Seki, S.3    Nakahori, Y.4    Tamura, T.5    Yamada, M.6    Iwaya, M.7
  • 29
    • 10744221353 scopus 로고    scopus 로고
    • Closing the gaps on human chromosome 19 revealed genes with a high density of repetitive tandemly arrayed elements
    • 327099 14718380 10.1101/gr.1929904
    • Leem SH Kouprina N Grimwood J Kim JH Mullokandov M Yoon YH Chae JY Morgan J Lucas S Richardson P et al Closing the gaps on human chromosome 19 revealed genes with a high density of repetitive tandemly arrayed elements Genome Res 2004, 14(2):239-246. 327099 14718380 10.1101/ gr.1929904
    • (2004) Genome Res , vol.14 , Issue.2 , pp. 239-246
    • Leem, S.H.1    Kouprina, N.2    Grimwood, J.3    Kim, J.H.4    Mullokandov, M.5    Yoon, Y.H.6    Chae, J.Y.7    Morgan, J.8    Lucas, S.9    Richardson, P.10
  • 30
    • 26444529054 scopus 로고    scopus 로고
    • A novel gene family NBPF: Intricate structure generated by gene duplications during primate evolution
    • 10.1093/molbev/msi222 16079250
    • Vandepoele K Van Roy N Staes K Speleman F van Roy F A novel gene family NBPF: Intricate structure generated by gene duplications during primate evolution Mol Biol Evol 2005, 22(11):2265-2274. 10.1093/molbev/msi222 16079250
    • (2005) Mol Biol Evol , vol.22 , Issue.11 , pp. 2265-2274
    • Vandepoele, K.1    Van Roy, N.2    Staes, K.3    Speleman, F.4    van Roy, F.5
  • 31
    • 33644756521 scopus 로고    scopus 로고
    • Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome
    • 10.1002/gcc.20298 16382448
    • Chen YT Iseli C Venditti CA Old LJ Simpson AJ Jongeneel CV Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome Genes Chromosomes Cancer 2006, 45(4):392-400. 10.1002/gcc.20298 16382448
    • (2006) Genes Chromosomes Cancer , vol.45 , Issue.4 , pp. 392-400
    • Chen, Y.T.1    Iseli, C.2    Venditti, C.A.3    Old, L.J.4    Simpson, A.J.5    Jongeneel, C.V.6
  • 32
    • 0036556278 scopus 로고    scopus 로고
    • Unstable transmission of the RS447 human megasatellite tandem repetitive sequence that contains the USP17 deubiquitinating enzyme gene
    • 10.1007/s00439-002-0698-2 11941478
    • Okada T Gondo Y Goto J Kanazawa I Hadano S Ikeda JE Unstable transmission of the RS447 human megasatellite tandem repetitive sequence that contains the USP17 deubiquitinating enzyme gene Hum Genet 2002, 110(4):302-313. 10.1007/s00439-002-0698-2 11941478
    • (2002) Hum Genet , vol.110 , Issue.4 , pp. 302-313
    • Okada, T.1    Gondo, Y.2    Goto, J.3    Kanazawa, I.4    Hadano, S.5    Ikeda, J.E.6
  • 33
    • 0033524016 scopus 로고    scopus 로고
    • The genomic structure of the DMBT1 gene: Evidence for a region with susceptibility to genomic instability
    • 10.1038/sj.onc.1203071 10597221
    • Mollenhauer J Holmskov U Wiemann S Krebs I Herbertz S Madsen J Kioschis P Coy JF Poustka A The genomic structure of the DMBT1 gene: Evidence for a region with susceptibility to genomic instability Oncogene 1999, 18(46):6233-6240. 10.1038/sj.onc.1203071 10597221
    • (1999) Oncogene , vol.18 , Issue.46 , pp. 6233-6240
    • Mollenhauer, J.1    Holmskov, U.2    Wiemann, S.3    Krebs, I.4    Herbertz, S.5    Madsen, J.6    Kioschis, P.7    Coy, J.F.8    Poustka, A.9
  • 35
    • 0023650628 scopus 로고
    • A new moderately repetitive DNA sequence family of novel organization
    • 340637 10.1093/nar/15.5.2327
    • Epstein ND Karlsson S O'Brien S Modi W Moulton A Nienhuis AW A new moderately repetitive DNA sequence family of novel organization Nucleic Acids Res 1987, 15(5):2327-2341. 340637 3562229 10.1093/nar/15.5.2327
    • (1987) Nucleic Acids Res , vol.15 , Issue.5 , pp. 2327-2341
    • Epstein, N.D.1    Karlsson, S.2    O'Brien, S.3    Modi, W.4    Moulton, A.5    Nienhuis, A.W.6
  • 36
    • 0026865003 scopus 로고
    • A novel GC-rich human macrosatellite VNTR in Xq24 is differentially methylated on active and inactive X chromosomes
    • 10.1038/ng0592-137 1302007
    • Giacalone J Friedes J Francke U A novel GC-rich human macrosatellite VNTR in Xq24 is differentially methylated on active and inactive X chromosomes Nat Genet 1992, 1(2):137-143. 10.1038/ng0592-137 1302007
    • (1992) Nat Genet , vol.1 , Issue.2 , pp. 137-143
    • Giacalone, J.1    Friedes, J.2    Francke, U.3
  • 41
    • 0036071427 scopus 로고    scopus 로고
    • Heterozygous submicroscopic inversions involving olfactory receptor-gene clusters mediate the recurrent t(4;8)(p16;p23) translocation
    • 379160 10.1086/341610
    • Giglio S Calvari V Gregato G Gimelli G Camanini S Giorda R Ragusa A Guerneri S Selicorni A Stumm M et al Heterozygous submicroscopic inversions involving olfactory receptor-gene clusters mediate the recurrent t(4;8)(p16;p23) translocation Am J Hum Genet 2002, 71(2):276-285. 379160 12058347 10.1086/341610
    • (2002) Am J Hum Genet , vol.71 , pp. 276-285
    • Giglio, S.1    Calvari, V.2    Gregato, G.3    Gimelli, G.4    Camanini, S.5    Giorda, R.6    Ragusa, A.7    Guerneri, S.8    Selicorni, A.9    Stumm, M.10
  • 42
    • 0025049328 scopus 로고
    • Genomic analysis of sequence variation in tandemly repeated DNA. Evidence for localized homogeneous sequence domains within arrays of alpha-satellite DNA
    • 10.1016/S0022-2836(05)80056-7 2122000
    • Warburton PE Willard HF Genomic analysis of sequence variation in tandemly repeated DNA. Evidence for localized homogeneous sequence domains within arrays of alpha-satellite DNA J Mol Biol 1990, 216(1):3-16. 10.1016/S0022-2836(05)80056-7 2122000
    • (1990) J Mol Biol , vol.216 , Issue.1 , pp. 3-16
    • Warburton, P.E.1    Willard, H.F.2
  • 43
    • 0033927331 scopus 로고    scopus 로고
    • Molecular cytogenetic analysis of eight inversion duplications of human chromosome 13q that each contain a neocentromere
    • 1378043 10777715 10.1086/302924
    • Warburton PE Dolled M Mahmood R Alonso A Li S Naritomi K Tohma T Nagai T Hasegawa T Ohashi H et al Molecular cytogenetic analysis of eight inversion duplications of human chromosome 13q that each contain a neocentromere Am J Hum Genet 2000, 66(6):1794-1806. 1378043 10777715 10.1086/302924
    • (2000) Am J Hum Genet , vol.66 , Issue.6 , pp. 1794-1806
    • Warburton, P.E.1    Dolled, M.2    Mahmood, R.3    Alonso, A.4    Li, S.5    Naritomi, K.6    Tohma, T.7    Nagai, T.8    Hasegawa, T.9    Ohashi, H.10


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