메뉴 건너뛰기




Volumn 22, Issue 3, 2014, Pages 335-350

A region of euchromatin coincides with an extensive tandem repeat on the mouse (Mus musculus) inactive X chromosome

Author keywords

Euchromatin and heterochromatin; H3K4me2; Inactive X chromosome; Mouse X chromosome; Tandem repeat

Indexed keywords

EUCHROMATIN; HETEROCHROMATIN; HISTONE; LYSINE;

EID: 84906057642     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-014-9424-x     Document Type: Article
Times cited : (3)

References (47)
  • 3
    • 0036337759 scopus 로고    scopus 로고
    • Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes
    • 1:CAS:528:DC%2BD38XislGjsQ%3D%3D 11740495
    • Boggs BA, Cheung P, Heard E, Spector DL, Chinault AC, Allis CD (2002) Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes. Nat Genet 30(1):73-76
    • (2002) Nat Genet , vol.30 , Issue.1 , pp. 73-76
    • Boggs, B.A.1    Cheung, P.2    Heard, E.3    Spector, D.L.4    Chinault, A.C.5    Allis, C.D.6
  • 4
    • 0026489906 scopus 로고
    • The product of the mouse Xist gene is a 15kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
    • 1:CAS:528:DyaK3sXisVyrs7k%3D 1423610
    • Brockdorff N, Ashworth A, Kay GF, McCabe VM, Norris DP, Cooper PJ, Swift S, Rastan S (1992) The product of the mouse Xist gene is a 15kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell 71:515-526
    • (1992) Cell , vol.71 , pp. 515-526
    • Brockdorff, N.1    Ashworth, A.2    Kay, G.F.3    McCabe, V.M.4    Norris, D.P.5    Cooper, P.J.6    Swift, S.7    Rastan, S.8
  • 5
    • 15244353967 scopus 로고    scopus 로고
    • X-inactivation profile reveals extensive variability in X-linked gene expression in females
    • DOI 10.1038/nature03479
    • Carrel L, Willard HF (2005) X-inactivation profile reveals extensive variability in X-linked gene expression in females. Nature 434(7031):400-404 (Pubitemid 40469185)
    • (2005) Nature , vol.434 , Issue.7031 , pp. 400-404
    • Carrel, L.1    Willard, H.F.2
  • 6
    • 33947169216 scopus 로고    scopus 로고
    • Variation in Xi chromatin organization and correlation of the H3K27me3 chromatin territories to transcribed sequences by microarray analysis
    • DOI 10.1007/s00412-006-0085-1
    • Chadwick BP (2007) Variation in Xi chromatin organization and correlation of the H3K27me3 chromatin territories to transcribed sequences by microarray analysis. Chromosoma 116(2):147-157 (Pubitemid 46404510)
    • (2007) Chromosoma , vol.116 , Issue.2 , pp. 147-157
    • Chadwick, B.P.1
  • 7
    • 48949102889 scopus 로고    scopus 로고
    • DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts
    • 1:CAS:528:DC%2BD1cXpsFOmsLk%3D 2493436 18456864
    • Chadwick BP (2008) DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts. Genome Res 18(8):1259-1269
    • (2008) Genome Res , vol.18 , Issue.8 , pp. 1259-1269
    • Chadwick, B.P.1
  • 8
    • 0037166937 scopus 로고    scopus 로고
    • Cell cycle - Dependent localization of macroH2A in chromatin of the inactive X chromosome
    • DOI 10.1083/jcb.200112074
    • Chadwick BP, Willard HF (2002) Cell cycle-dependent localization of macroH2A in chromatin of the inactive X chromosome. J Cell Biol 157(7):1113-1123 (Pubitemid 34847783)
    • (2002) Journal of Cell Biology , vol.157 , Issue.7 , pp. 1113-1123
    • Chadwick, B.P.1    Willard, H.F.2
  • 11
    • 0030012657 scopus 로고    scopus 로고
    • Human/mouse homology relationships
    • DOI 10.1006/geno.1996.0209
    • DeBry RW, Seldin MF (1996) Human/mouse homology relationships. Genomics 33(3):337-351 (Pubitemid 26159850)
    • (1996) Genomics , vol.33 , Issue.3 , pp. 337-351
    • DeBry, R.W.1    Seldin, M.F.2
  • 12
    • 0026865003 scopus 로고
    • A novel GC-rich human macrosatellite VNTR in Xq24 is differentially methylated on active and inactive X chromosomes
    • 1:CAS:528:DyaK38XksVWktL0%3D 1302007
    • Giacalone J, Friedes J, Francke U (1992) A novel GC-rich human macrosatellite VNTR in Xq24 is differentially methylated on active and inactive X chromosomes. Nat Genet 1(2):137-143
    • (1992) Nat Genet , vol.1 , Issue.2 , pp. 137-143
    • Giacalone, J.1    Friedes, J.2    Francke, U.3
  • 13
    • 84865051224 scopus 로고    scopus 로고
    • The mouse DXZ4 homolog retains Ctcf binding and proximity to Pls3 despite substantial organizational differences compared to the primate macrosatellite
    • 10.1186/gb-2012-13-8-r70 3491370 22906166
    • Horakova AH, Calabrese JM, McLaughlin CR, Tremblay DC, Magnuson T, Chadwick BP (2012a) The mouse DXZ4 homolog retains Ctcf binding and proximity to Pls3 despite substantial organizational differences compared to the primate macrosatellite. Genome Biol 13(8):R70. doi: 10.1186/gb-2012-13-8-r70
    • (2012) Genome Biol , vol.13 , Issue.8 , pp. 70
    • Horakova, A.H.1    Calabrese, J.M.2    McLaughlin, C.R.3    Tremblay, D.C.4    Magnuson, T.5    Chadwick, B.P.6
  • 14
    • 84867116639 scopus 로고    scopus 로고
    • The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome
    • 10.1093/hmg/dds270 3459461 22791747
    • Horakova AH, Moseley SC, McLaughlin CR, Tremblay DC, Chadwick BP (2012b) The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome. Hum Mol Genet. doi: 10.1093/hmg/dds270
    • (2012) Hum Mol Genet
    • Horakova, A.H.1    Moseley, S.C.2    McLaughlin, C.R.3    Tremblay, D.C.4    Chadwick, B.P.5
  • 15
    • 0027183088 scopus 로고
    • The inactive X chromosome in female mammals is distinguished by a lack of histone H4 acetylation, a cytogenetic marker for gene expression
    • DOI 10.1016/0092-8674(93)90419-Q
    • Jeppesen P, Turner BM (1993) The inactive X chromosome in female mammals is distinguished by a lack of histone H4 acetylation, a cytogenetic marker for gene expression. Cell 74:281-289 (Pubitemid 23221704)
    • (1993) Cell , vol.74 , Issue.2 , pp. 281-289
    • Jeppesen, P.1    Turner, B.M.2
  • 16
    • 84871519181 scopus 로고    scopus 로고
    • TALENs: A widely applicable technology for targeted genome editing
    • 1:CAS:528:DC%2BC38Xhs12ks7rJ 3547402 23169466
    • Joung JK, Sander JD (2013) TALENs: a widely applicable technology for targeted genome editing. Nat Rev Mol Cell Biol 14(1):49-55
    • (2013) Nat Rev Mol Cell Biol , vol.14 , Issue.1 , pp. 49-55
    • Joung, J.K.1    Sander, J.D.2
  • 17
    • 84875177348 scopus 로고    scopus 로고
    • X-inactivation, imprinting, and long noncoding RNAs in health and disease
    • 10.1016/j.cell.2013.02.016 1:CAS:528:DC%2BC3sXktFakt70%3D 23498939
    • Lee JT, Bartolomei MS (2013) X-inactivation, imprinting, and long noncoding RNAs in health and disease. Cell 152(6):1308-1323. doi: 10.1016/j.cell.2013.02.016
    • (2013) Cell , vol.152 , Issue.6 , pp. 1308-1323
    • Lee, J.T.1    Bartolomei, M.S.2
  • 18
    • 7144223296 scopus 로고
    • Gene action in the X-chromosome of the mouse (Mus musculus L.)
    • 1:STN:280:DyaF3c%2FosVGksw%3D%3D 13764598
    • Lyon MF (1961) Gene action in the X-chromosome of the mouse (Mus musculus L.). Nature 190:372-373
    • (1961) Nature , vol.190 , pp. 372-373
    • Lyon, M.F.1
  • 20
    • 0026658839 scopus 로고
    • Role of the pseudoautosomal region in sex-chromosome pairing during male meiosis: Meiotic studies in a man with a deletion of distal Xp
    • 1:STN:280:DyaK38zlvFWjsg%3D%3D 1682713 1496984
    • Mohandas TK, Speed RM, Passage MB, Yen PH, Chandley AC, Shapiro LJ (1992) Role of the pseudoautosomal region in sex-chromosome pairing during male meiosis: meiotic studies in a man with a deletion of distal Xp. Am J Hum Genet 51(3):526-533
    • (1992) Am J Hum Genet , vol.51 , Issue.3 , pp. 526-533
    • Mohandas, T.K.1    Speed, R.M.2    Passage, M.B.3    Yen, P.H.4    Chandley, A.C.5    Shapiro, L.J.6
  • 21
    • 44349137392 scopus 로고    scopus 로고
    • The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression
    • DOI 10.1038/ng.126, PII NG126
    • Mueller JL, Mahadevaiah SK, Park PJ, Warburton PE, Page DC, Turner JM (2008) The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression. Nat Genet 40(6):794-799. doi: 10.1038/ng.126 (Pubitemid 351748859)
    • (2008) Nature Genetics , vol.40 , Issue.6 , pp. 794-799
    • Mueller, J.L.1    Mahadevaiah, S.K.2    Park, P.J.3    Warburton, P.E.4    Page, D.C.5    Turner, J.M.A.6
  • 23
    • 23144464319 scopus 로고    scopus 로고
    • YASS: Enhancing the sensitivity of DNA similarity search
    • DOI 10.1093/nar/gki478
    • Noe L, Kucherov G (2005) YASS: enhancing the sensitivity of DNA similarity search. Nucleic Acids Res 33(Web Server issue):W540-W543. doi: 10.1093/nar/gki478 (Pubitemid 44529979)
    • (2005) Nucleic Acids Research , vol.33
    • Noe, L.1    Kucherov, G.2
  • 24
    • 77956189840 scopus 로고    scopus 로고
    • CTCF shapes chromatin by multiple mechanisms: The impact of 20 years of CTCF research on understanding the workings of chromatin
    • 10.1007/s00412-010-0262-0 1:CAS:528:DC%2BC3cXptlaksLw%3D 2910314 20174815
    • Ohlsson R, Bartkuhn M, Renkawitz R (2010) CTCF shapes chromatin by multiple mechanisms: the impact of 20 years of CTCF research on understanding the workings of chromatin. Chromosoma 119(4):351-360. doi: 10.1007/s00412-010- 0262-0
    • (2010) Chromosoma , vol.119 , Issue.4 , pp. 351-360
    • Ohlsson, R.1    Bartkuhn, M.2    Renkawitz, R.3
  • 27
    • 0034517631 scopus 로고    scopus 로고
    • A novel family of candidate pheromone receptors in mammals
    • DOI 10.1016/S0896-6273(00)00157-4
    • Pantages E, Dulac C (2000) A novel family of candidate pheromone receptors in mammals. Neuron 28(3):835-845 (Pubitemid 32038075)
    • (2000) Neuron , vol.28 , Issue.3 , pp. 835-845
    • Pantages, E.1    Dulac, C.2
  • 28
    • 0014934868 scopus 로고
    • Definitive evidence for the short arm of the y chromosome associating with the X chromosome during miosis in the human male
    • 1:STN:280:DyaE3c7ovVOgtw%3D%3D 4192296
    • Pearson PL, Bobrow M (1970) Definitive evidence for the short arm of the Y chromosome associating with the X chromosome during miosis in the human male. Nature 226(5249):959-961
    • (1970) Nature , vol.226 , Issue.5249 , pp. 959-961
    • Pearson, P.L.1    Bobrow, M.2
  • 29
    • 44349186294 scopus 로고    scopus 로고
    • Epigenetic regulation of heterochromatic DNA stability
    • DOI 10.1016/j.gde.2008.01.021, PII S0959437X08000208
    • Peng JC, Karpen GH (2008) Epigenetic regulation of heterochromatic DNA stability. Curr Opin Genet Dev 18:204-211 (Pubitemid 351749828)
    • (2008) Current Opinion in Genetics and Development , vol.18 , Issue.2 , pp. 204-211
    • Peng, J.C.1    Karpen, G.H.2
  • 30
    • 0035184850 scopus 로고    scopus 로고
    • A short pseudoautosomal region in laboratory mice
    • Perry J, Palmer S, Gabriel A, Ashworth A (2001) A short pseudoautosomal region in laboratory mice. Genome Res 11(11):1826-1832. doi: 10.1101/gr.203001 (Pubitemid 33100422)
    • (2001) Genome Research , vol.11 , Issue.11 , pp. 1826-1832
    • Perry, J.1    Palmer, S.2    Gabriel, A.3    Ashworth, A.4
  • 31
    • 0036338205 scopus 로고    scopus 로고
    • Histone H3 lysine 9 methylation is an epigenetic imprint of facultative heterochromatin
    • 1:CAS:528:DC%2BD38XivVCrsQ%3D%3D 11740497
    • Peters AH, Mermoud JE, O'Carroll D, Pagani M, Schweizer D, Brockdorff N, Jenuwein T (2002) Histone H3 lysine 9 methylation is an epigenetic imprint of facultative heterochromatin. Nat Genet 30(1):77-80
    • (2002) Nat Genet , vol.30 , Issue.1 , pp. 77-80
    • Peters, A.H.1    Mermoud, J.E.2    O'Carroll, D.3    Pagani, M.4    Schweizer, D.5    Brockdorff, N.6    Jenuwein, T.7
  • 34
    • 84874446626 scopus 로고    scopus 로고
    • Genome-wide analysis of macrosatellite repeat copy number variation in worldwide populations: Evidence for differences and commonalities in size distributions and size restrictions
    • 10.1186/1471-2164-14-143 1:CAS:528:DC%2BC3sXosVSgtb8%3D 3599962 23496858
    • Schaap M, Lemmers RJ, Maassen R, van der Vliet PJ, Hoogerheide LF, van Dijk HK, Basturk N, de Knijff P, van der Maarel SM (2013) Genome-wide analysis of macrosatellite repeat copy number variation in worldwide populations: evidence for differences and commonalities in size distributions and size restrictions. BMC Genomics 14:143. doi: 10.1186/1471-2164-14-143
    • (2013) BMC Genomics , vol.14 , pp. 143
    • Schaap, M.1    Lemmers, R.J.2    Maassen, R.3    Van Der Vliet, P.J.4    Hoogerheide, L.F.5    Van Dijk, H.K.6    Basturk, N.7    De Knijff, P.8    Van Der Maarel, S.M.9
  • 36
    • 46249114293 scopus 로고    scopus 로고
    • Mouse segmental duplication and copy number variation
    • DOI 10.1038/ng.172, PII NG172
    • She X, Cheng Z, Zollner S, Church DM, Eichler EE (2008) Mouse segmental duplication and copy number variation. Nat Genet 40(7):909-914. doi: 10.1038/ng.172 (Pubitemid 351913656)
    • (2008) Nature Genetics , vol.40 , Issue.7 , pp. 909-914
    • She, X.1    Cheng, Z.2    Zollner, S.3    Church, D.M.4    Eichler, E.E.5
  • 37
    • 7244247384 scopus 로고    scopus 로고
    • Shotgun sequence assembly and recent segmental duplications within the human genome
    • DOI 10.1038/nature03062
    • She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE (2004) Shotgun sequence assembly and recent segmental duplications within the human genome. Nature 431(7011):927-930. doi: 10.1038/nature03062 (Pubitemid 39434408)
    • (2004) Nature , vol.431 , Issue.7011 , pp. 927-930
    • She, X.1    Jiang, Z.2    Clark, R.A.3    Liu, G.4    Cheng, Z.5    Tuzun, E.6    Church, D.M.7    Sutton, G.8    Halpern, A.L.9    Elchler, E.E.10
  • 38
    • 0037387711 scopus 로고    scopus 로고
    • Establishment of histone H3 methylation on the inactive X chromosome requires transient recruitment of Eed-Enx1 polycomb group complexes
    • DOI 10.1016/S1534-5807(03)00068-6, PII S1534580703000686
    • Silva J, Mak W, Zvetkova I, Appanah R, Nesterova TB, Webster Z, Peters AH, Jenuwein T, Otte AP, Brockdorff N (2003) Establishment of histone h3 methylation on the inactive x chromosome requires transient recruitment of eed-enx1 polycomb group complexes. Dev Cell 4(4):481-495 (Pubitemid 36437556)
    • (2003) Developmental Cell , vol.4 , Issue.4 , pp. 481-495
    • Silva, J.1    Mak, W.2    Zvetkova, I.3    Appanah, R.4    Nesterova, T.B.5    Webster, Z.6    Peters, A.H.F.M.7    Jenuwein, T.8    Otte, A.P.9    Brockdorff, N.10
  • 39
    • 80054705013 scopus 로고    scopus 로고
    • A top-down analysis of Xa- and Xi-territories reveals differences of higher order structure at >/=20 Mb genomic length scales
    • 10.4161/nucl.2.5.17862 21970989
    • Teller K, Illner D, Thamm S, Casas-Delucchi CS, Versteeg R, Indemans M, Cremer T, Cremer M (2011) A top-down analysis of Xa- and Xi-territories reveals differences of higher order structure at >/=20 Mb genomic length scales. Nucleus 2(5):465-477. doi: 10.4161/nucl.2.5.17862
    • (2011) Nucleus , vol.2 , Issue.5 , pp. 465-477
    • Teller, K.1    Illner, D.2    Thamm, S.3    Casas-Delucchi, C.S.4    Versteeg, R.5    Indemans, M.6    Cremer, T.7    Cremer, M.8
  • 40
    • 84883840386 scopus 로고
    • Quantitative studies of the growth of mouse embryo cells in culture and their development into established lines
    • 1:STN:280:DyaF387nslSrsA%3D%3D 2106200 13985244
    • Todaro GJ, Green H (1963) Quantitative studies of the growth of mouse embryo cells in culture and their development into established lines. J Cell Biol 17:299-313
    • (1963) J Cell Biol , vol.17 , pp. 299-313
    • Todaro, G.J.1    Green, H.2
  • 41
    • 83855165105 scopus 로고    scopus 로고
    • Repetitive DNA and next-generation sequencing: Computational challenges and solutions
    • 10.1038/nrg3117 1:CAS:528:DC%2BC3MXhsFeit7vF
    • Treangen TJ, Salzberg SL (2012) Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet 13(1):36-46. doi: 10.1038/nrg3117
    • (2012) Nat Rev Genet , vol.13 , Issue.1 , pp. 36-46
    • Treangen, T.J.1    Salzberg, S.L.2
  • 42
    • 78149441209 scopus 로고    scopus 로고
    • Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome
    • 10.1186/1471-2164-11-632 3018141 21078170
    • Tremblay DC, Alexander G Jr, Moseley S, Chadwick BP (2010) Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome. BMC Genomics 11:632. doi: 10.1186/1471-2164-11-632
    • (2010) BMC Genomics , vol.11 , pp. 632
    • Tremblay, D.C.1    Alexander Jr., G.2    Moseley, S.3    Chadwick, B.P.4
  • 43
    • 79955538818 scopus 로고    scopus 로고
    • Variation in array size, monomer composition and expression of the macrosatellite DXZ4
    • 10.1371/journal.pone.0018969 1:CAS:528:DC%2BC3MXlsVansb0%3D 3081327 21544201
    • Tremblay DC, Moseley S, Chadwick BP (2011) Variation in array size, monomer composition and expression of the macrosatellite DXZ4. PLoS ONE 6(4):e18969. doi: 10.1371/journal.pone.0018969
    • (2011) PLoS ONE , vol.6 , Issue.4 , pp. 18969
    • Tremblay, D.C.1    Moseley, S.2    Chadwick, B.P.3
  • 46
    • 79960484375 scopus 로고    scopus 로고
    • Gene silencing in X-chromosome inactivation: Advances in understanding facultative heterochromatin formation
    • 10.1038/nrg3035 1:CAS:528:DC%2BC3MXovFyjtbw%3D 21765457
    • Wutz A (2011) Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation. Nat Rev Genet 12(8):542-553. doi: 10.1038/nrg3035
    • (2011) Nat Rev Genet , vol.12 , Issue.8 , pp. 542-553
    • Wutz, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.