메뉴 건너뛰기




Volumn 25, Issue 3, 2016, Pages 597-608

De novo dominant ASXL3 mutations alter H2A deubiquitination and transcription in Bainbridge-Ropers syndrome

Author keywords

[No Author keywords available]

Indexed keywords

ASXL3 PROTEIN; BAP1 PROTEIN; HISTONE H2A; HYDROLASE; PROTEIN; TRANSCRIPTOME; UNCLASSIFIED DRUG; ASXL3 PROTEIN, HUMAN; BAP1 PROTEIN, HUMAN; HISTONE; PROTEIN BINDING; TRANSCRIPTION FACTOR; TUMOR SUPPRESSOR PROTEIN; UBIQUITIN THIOLESTERASE;

EID: 84960886761     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddv499     Document Type: Article
Times cited : (57)

References (74)
  • 1
    • 84874009428 scopus 로고    scopus 로고
    • Expanding our knowledge of conditions associated with the ASXL gene family
    • Russell, B. and Graham, J.M. (2013) Expanding our knowledge of conditions associated with the ASXL gene family. Genome Med., 5, 16.
    • (2013) Genome Med , vol.5 , pp. 16
    • Russell, B.1    Graham, J.M.2
  • 4
    • 84883897762 scopus 로고    scopus 로고
    • De novo frameshift mutation in ASXL3 in a patient with global developmental delay, microcephaly, and craniofacial anomalies
    • Dinwiddie, D.L., Soden, S.E., Saunders, C.J., Miller, N.A., Farrow, E.G., Smith, L.D. and Kingsmore, S.F. (2013) De novo frameshift mutation in ASXL3 in a patient with global developmental delay, microcephaly, and craniofacial anomalies. BMC Med. Genomics, 6, 32.
    • (2013) BMC Med. Genomics , vol.6 , pp. 32
    • Dinwiddie, D.L.1    Soden, S.E.2    Saunders, C.J.3    Miller, N.A.4    Farrow, E.G.5    Smith, L.D.6    Kingsmore, S.F.7
  • 7
    • 84863970074 scopus 로고    scopus 로고
    • De novo mutations in human genetic disease
    • Veltman, J.A. and Brunner, H.G. (2012) De novo mutations in human genetic disease. Nat. Rev. Genet., 13, 565-575.
    • (2012) Nat. Rev. Genet , vol.13 , pp. 565-575
    • Veltman, J.A.1    Brunner, H.G.2
  • 8
    • 70450277268 scopus 로고    scopus 로고
    • Additional sex combs-like 1 belongs to the enhancer of trithorax and polycomb group and genetically interacts with Cbx2 in mice
    • Fisher, C.L., Lee, I., Bloyer, S., Bozza, S., Chevalier, J., Dahl, A., Bodner, C., Helgason, C.D., Hess, J.L., Humphries, R.K. et al. (2010) Additional sex combs-like 1 belongs to the enhancer of trithorax and polycomb group and genetically interacts with Cbx2 in mice. Dev. Biol., 337, 9-15.
    • (2010) Dev. Biol , vol.337 , pp. 9-15
    • Fisher, C.L.1    Lee, I.2    Bloyer, S.3    Bozza, S.4    Chevalier, J.5    Dahl, A.6    Bodner, C.7    Helgason, C.D.8    Hess, J.L.9    Humphries, R.K.10
  • 9
    • 62749165324 scopus 로고    scopus 로고
    • Functional conservation of Asxl2, a murine homolog for the Drosophila enhancer of trithorax and polycomb group gene Asx
    • Baskind, H.A., Na, L., Ma, Q., Patel, M.P., Geenen, D.L. and Wang, Q.T. (2009) Functional conservation of Asxl2, a murine homolog for the Drosophila enhancer of trithorax and polycomb group gene Asx. PLoS One, 4, e4750.
    • (2009) PLoS One , vol.4
    • Baskind, H.A.1    Na, L.2    Ma, Q.3    Patel, M.P.4    Geenen, D.L.5    Wang, Q.T.6
  • 11
    • 84881108886 scopus 로고    scopus 로고
    • Functional and cancer genomics of ASXL family members
    • Katoh, M. (2013) Functional and cancer genomics of ASXL family members. Br. J. Cancer, 109, 299-306.
    • (2013) Br. J. Cancer , vol.109 , pp. 299-306
    • Katoh, M.1
  • 12
    • 84855695098 scopus 로고    scopus 로고
    • The HARE-HTH and associated domains: novel modules in the coordination of epigenetic DNA and protein modifications
    • Aravind, L. and Iyer, L.M. (2012) The HARE-HTH and associated domains: novel modules in the coordination of epigenetic DNA and protein modifications. Cell Cycle, 11, 119-131.
    • (2012) Cell Cycle , vol.11 , pp. 119-131
    • Aravind, L.1    Iyer, L.M.2
  • 13
    • 33644659923 scopus 로고    scopus 로고
    • Characterization of Asxl1, a murine homolog of Additional sex combs, and analysis of the Asx-like gene family
    • Fisher, C.L., Randazzo, F., Humphries, R.K. and Brock, H.W. (2006) Characterization of Asxl1, a murine homolog of Additional sex combs, and analysis of the Asx-like gene family. Gene, 369, 109-118.
    • (2006) Gene , vol.369 , pp. 109-118
    • Fisher, C.L.1    Randazzo, F.2    Humphries, R.K.3    Brock, H.W.4
  • 15
    • 84929580822 scopus 로고    scopus 로고
    • Functional proteomics of the epigenetic regulators ASXL1, ASXL2 and ASXL3: a convergence of proteomics and epigenetics for translational medicine
    • Katoh, M. (2015) Functional proteomics of the epigenetic regulators ASXL1, ASXL2 and ASXL3: a convergence of proteomics and epigenetics for translational medicine. Expert. Rev. Proteomics., 12, 317-328.
    • (2015) Expert. Rev. Proteomics , vol.12 , pp. 317-328
    • Katoh, M.1
  • 16
    • 84885393469 scopus 로고    scopus 로고
    • Transcriptional regulation by Polycomb group proteins
    • Di Croce, L. and Helin, K. (2013) Transcriptional regulation by Polycomb group proteins. Nat. Struct. Mol. Biol., 20, 1147-1155.
    • (2013) Nat. Struct. Mol. Biol , vol.20 , pp. 1147-1155
    • Di Croce, L.1    Helin, K.2
  • 18
    • 84883643064 scopus 로고    scopus 로고
    • Additional sex combs-like 2 is required for polycomb repressive complex 2 binding at select targets
    • Lai, H.L. andWang, Q.T. (2013) Additional sex combs-like 2 is required for polycomb repressive complex 2 binding at select targets. PLoS One, 8, e73983.
    • (2013) PLoS One , vol.8
    • Lai H.L.andWang, Q.T.1
  • 21
    • 33745842538 scopus 로고    scopus 로고
    • Additional sex comb-like 1 (ASXL1), in cooperation with SRC-1, acts as a ligand-dependent coactivator for retinoic acid receptor
    • Cho, Y.S., Kim, E.J., Park, U.H., Sin, H.S. and Um, S.J. (2006) Additional sex comb-like 1 (ASXL1), in cooperation with SRC-1, acts as a ligand-dependent coactivator for retinoic acid receptor. J. Biol. Chem., 281, 17588-17598.
    • (2006) J. Biol. Chem , vol.281 , pp. 17588-17598
    • Cho, Y.S.1    Kim, E.J.2    Park, U.H.3    Sin, H.S.4    Um, S.J.5
  • 23
    • 77953995002 scopus 로고    scopus 로고
    • Covalent histone modifications-miswritten, misinterpreted and mis-erased in human cancers
    • Chi, P., Allis, C.D. and Wang, G.G. (2010) Covalent histone modifications-miswritten, misinterpreted and mis-erased in human cancers. Nat. Rev. Cancer, 10, 457-469.
    • (2010) Nat. Rev. Cancer , vol.10 , pp. 457-469
    • Chi, P.1    Allis, C.D.2    Wang, G.G.3
  • 24
    • 79959893275 scopus 로고    scopus 로고
    • The PHD finger: a versatile epigenome reader
    • Sanchez, R. and Zhou, M.M. (2011) The PHD finger: a versatile epigenome reader. Trends Biochem. Sci., 36, 364-372.
    • (2011) Trends Biochem. Sci , vol.36 , pp. 364-372
    • Sanchez, R.1    Zhou, M.M.2
  • 25
    • 84864585700 scopus 로고    scopus 로고
    • Histone H2A mono-ubiquitination is a crucial step to mediate PRC1-dependent repression of developmental genes to maintain ES cell identity
    • Endoh, M., Endo, T.A., Endoh, T., Isono, K., Sharif, J., Ohara, O., Toyoda, T., Ito, T., Eskeland, R., Bickmore, W.A. et al. (2012) Histone H2A mono-ubiquitination is a crucial step to mediate PRC1-dependent repression of developmental genes to maintain ES cell identity. PLoS Genet., 8, e1002774.
    • (2012) PLoS Genet , vol.8
    • Endoh, M.1    Endo, T.A.2    Endoh, T.3    Isono, K.4    Sharif, J.5    Ohara, O.6    Toyoda, T.7    Ito, T.8    Eskeland, R.9    Bickmore, W.A.10
  • 30
    • 0028958119 scopus 로고
    • Comparison of germline mosaics of genes in the Polycomb group of Drosophila melanogaster
    • Soto, M.C., Chou, T.B. and Bender, W. (1995) Comparison of germline mosaics of genes in the Polycomb group of Drosophila melanogaster. Genetics, 140, 231-243.
    • (1995) Genetics , vol.140 , pp. 231-243
    • Soto, M.C.1    Chou, T.B.2    Bender, W.3
  • 31
    • 0037805574 scopus 로고    scopus 로고
    • On ontologies for biologists: the Gene Ontology-untangling the web
    • discussion 80-63, 84-90, 244-252
    • Ashburner, M. and Lewis, S. (2002) On ontologies for biologists: the Gene Ontology-untangling the web. Novartis. Found. Symp., 247, 66-80; discussion 80-63, 84-90, 244-252.
    • (2002) Novartis. Found. Symp , vol.247 , pp. 66-80
    • Ashburner, M.1    Lewis, S.2
  • 32
    • 33745626459 scopus 로고    scopus 로고
    • Improved scoring of functional groups fromgene expression data by decorrelating GO graph structure
    • Alexa, A., Rahnenführer, J. and Lengauer, T. (2006) Improved scoring of functional groups fromgene expression data by decorrelating GO graph structure. Bioinformatics, 22, 1600-1607.
    • (2006) Bioinformatics , vol.22 , pp. 1600-1607
    • Alexa, A.1    Rahnenführer, J.2    Lengauer, T.3
  • 36
    • 65649132289 scopus 로고    scopus 로고
    • Developing classifiers for the detection of cancer using multi-analytes
    • Tarca, A.L., Draghici, S. and Romero, R. (2009) Developing classifiers for the detection of cancer using multi-analytes. Methods Mol. Biol., 520, 259-272.
    • (2009) Methods Mol. Biol , vol.520 , pp. 259-272
    • Tarca, A.L.1    Draghici, S.2    Romero, R.3
  • 37
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa, M. and Goto, S. (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 38
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109-D114.
    • (2012) Nucleic Acids Res , vol.40 , pp. D109-D114
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 46
    • 79251475891 scopus 로고    scopus 로고
    • Nonsense mediated decay resistant mutations are a source of expressed mutant proteins in colon cancer cell lines with microsatellite instability
    • Williams, D.S., Bird, M.J., Jorissen, R.N., Yu, Y.L., Walker, F., Zhang, H.H., Nice, E.C. and Burgess, A.W. (2010) Nonsense mediated decay resistant mutations are a source of expressed mutant proteins in colon cancer cell lines with microsatellite instability. PLoS One, 5, e16012.
    • (2010) PLoS One , vol.5
    • Williams, D.S.1    Bird, M.J.2    Jorissen, R.N.3    Yu, Y.L.4    Walker, F.5    Zhang, H.H.6    Nice, E.C.7    Burgess, A.W.8
  • 53
    • 84906054823 scopus 로고    scopus 로고
    • Integrating genetics and epigenetics in myelodysplastic syndromes: advances in pathogenesis and disease evolution
    • Bravo, G.M., Lee, E., Merchan, B., Kantarjian, H.M. and García-Manero, G. (2014) Integrating genetics and epigenetics in myelodysplastic syndromes: advances in pathogenesis and disease evolution. Br. J. Haematol., 166, 646-659.
    • (2014) Br. J. Haematol , vol.166 , pp. 646-659
    • Bravo, G.M.1    Lee, E.2    Merchan, B.3    Kantarjian, H.M.4    García-Manero, G.5
  • 54
    • 84928533993 scopus 로고    scopus 로고
    • Epigenetic alterations in acutemyeloid leukemias
    • Mehdipour, P., Santoro, F. and Minucci, S. (2015) Epigenetic alterations in acutemyeloid leukemias. FEBS J., 282, 1786-1800.
    • (2015) FEBS J , vol.282 , pp. 1786-1800
    • Mehdipour, P.1    Santoro, F.2    Minucci, S.3
  • 55
    • 84866378702 scopus 로고    scopus 로고
    • The role of mutations in epigenetic regulators in myeloid malignancies
    • Shih, A.H., Abdel-Wahab, O., Patel, J.P. and Levine, R.L. (2012) The role of mutations in epigenetic regulators in myeloid malignancies. Nat. Rev. Cancer, 12, 599-612.
    • (2012) Nat. Rev. Cancer , vol.12 , pp. 599-612
    • Shih, A.H.1    Abdel-Wahab, O.2    Patel, J.P.3    Levine, R.L.4
  • 56
    • 84891301466 scopus 로고    scopus 로고
    • The genetic basis of myelodysplasia and its clinical relevance
    • Cazzola, M., Della Porta, M.G. and Malcovati, L. (2013) The genetic basis of myelodysplasia and its clinical relevance. Blood, 122, 4021-4034.
    • (2013) Blood , vol.122 , pp. 4021-4034
    • Cazzola, M.1    Della Porta, M.G.2    Malcovati, L.3
  • 59
  • 62
    • 0033552813 scopus 로고    scopus 로고
    • The oncogene and Polycomb-group gene bmi-1 regulates cell proliferation and senescence through the ink4a locus
    • Jacobs, J.J., Kieboom, K., Marino, S., DePinho, R.A. and van Lohuizen, M. (1999) The oncogene and Polycomb-group gene bmi-1 regulates cell proliferation and senescence through the ink4a locus. Nature, 397, 164-168.
    • (1999) Nature , vol.397 , pp. 164-168
    • Jacobs, J.J.1    Kieboom, K.2    Marino, S.3    DePinho, R.A.4    van Lohuizen, M.5
  • 66
    • 84875799835 scopus 로고    scopus 로고
    • Fbxl10/Kdm2b recruits polycomb repressive complex 1 to CpG islands and regulates H2A ubiquitylation
    • Wu, X., Johansen, J.V. and Helin, K. (2013) Fbxl10/Kdm2b recruits polycomb repressive complex 1 to CpG islands and regulates H2A ubiquitylation. Mol. Cell, 49, 1134-1146.
    • (2013) Mol. Cell , vol.49 , pp. 1134-1146
    • Wu, X.1    Johansen, J.V.2    Helin, K.3
  • 68
    • 41049111595 scopus 로고    scopus 로고
    • Establishment and culture of human skin fibroblasts
    • Chapter 28, Unit 28.23
    • Villegas, J. and McPhaul, M. (2005) Establishment and culture of human skin fibroblasts. Curr. Protoc. Mol. Biol., Chapter 28, Unit 28.23.
    • (2005) Curr. Protoc. Mol. Biol
    • Villegas, J.1    McPhaul, M.2
  • 69
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L. and Salzberg, S.L. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 70
    • 80051507403 scopus 로고    scopus 로고
    • TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
    • Kim, D. and Salzberg, S.L. (2011) TopHat-Fusion: an algorithm for discovery of novel fusion transcripts. Genome Biol., 12, R72.
    • (2011) Genome Biol , vol.12 , pp. R72
    • Kim, D.1    Salzberg, S.L.2
  • 71
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love, M.I., Huber, W. and Anders, S. (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol., 15, 550.
    • (2014) Genome Biol , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 72
    • 84913593681 scopus 로고    scopus 로고
    • Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
    • Picelli, S., Björklund, A.K., Reinius, B., Sagasser, S., Winberg, G. and Sandberg, R. (2014) Tn5 transposase and tagmentation procedures for massively scaled sequencing projects. Genome Res., 24, 2033-2040.
    • (2014) Genome Res , vol.24 , pp. 2033-2040
    • Picelli, S.1    Björklund, A.K.2    Reinius, B.3    Sagasser, S.4    Winberg, G.5    Sandberg, R.6
  • 73
    • 0025352188 scopus 로고
    • Penetration and intracellular growth of Brucella abortus in nonphagocytic cells in vitro
    • Detilleux, P.G., Deyoe, B.L. and Cheville, N.F. (1990) Penetration and intracellular growth of Brucella abortus in nonphagocytic cells in vitro. Infect. Immun., 58, 2320-2328.
    • (1990) Infect. Immun , vol.58 , pp. 2320-2328
    • Detilleux, P.G.1    Deyoe, B.L.2    Cheville, N.F.3
  • 74
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.