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Volumn 247, Issue , 2002, Pages 66-83

On ontologies for biologists: The gene ontology - Untangling the web

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; BIOLOGICAL MODEL; COMPUTER PROGRAM; DATA BASE; GENETIC PROCEDURES; REVIEW;

EID: 0037805574     PISSN: None     EISSN: None     Source Type: Book Series    
DOI: None     Document Type: Conference Paper
Times cited : (104)

References (58)
  • 1
    • 0034708480 scopus 로고    scopus 로고
    • The genome sequence of Drosophila melanogaster
    • Adams M, Celniker SE, Holt RA et al 2000 The genome sequence of Drosophila melanogaster. Science 287:2185-2195
    • (2000) Science , vol.287 , pp. 2185-2195
    • Adams, M.1    Celniker, S.E.2    Holt, R.A.3
  • 3
    • 24944525136 scopus 로고    scopus 로고
    • AmiGO 2001 url: www.godatabase.org/cgi-bin/go.cgi
    • (2001)
  • 4
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA et al 2000 Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25:25-29
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3
  • 6
    • 0035459721 scopus 로고    scopus 로고
    • Ontologies of developmental anatomy: Their current and future roles
    • Bard J, Winter R 2001 Ontologies of developmental anatomy: their current and future roles. Brief Bioinform 2:289-299
    • (2001) Brief Bioinform , vol.2 , pp. 289-299
    • Bard, J.1    Winter, R.2
  • 7
    • 21844495173 scopus 로고
    • Nomenclature of sequenced plant genes
    • Commission of Plant Gene Nomenclature 1994 Nomenclature of sequenced plant genes. Plant Molec Biol Rep 12:S1-S109
    • (1994) Plant Molec Biol Rep , vol.12
  • 8
    • 84936824220 scopus 로고
    • New York, Cambridge University Press
    • Cruse DA 1986 Lexical semantics. New York, Cambridge University Press
    • (1986) Lexical Semantics
    • Cruse, D.A.1
  • 9
    • 24944530686 scopus 로고    scopus 로고
    • DAG Edit 2001 url: sourceforge.net/projects/geneontology/
    • (2001)
  • 11
  • 12
    • 0036087548 scopus 로고    scopus 로고
    • Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)
    • Dwight SS, Harris MA, Dolinski K et al 2002 Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res 30:69-72
    • (2002) Nucleic Acids Res , vol.30 , pp. 69-72
    • Dwight, S.S.1    Harris, M.A.2    Dolinski, K.3
  • 15
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.
    • Fleischmann RD, Adams MD, White O et al 1995 Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269:496-512
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3
  • 16
    • 0036081052 scopus 로고    scopus 로고
    • The FlyBase database of the Drosophila genome projects and community literature
    • The FlyBase Consortium 2002 The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res 30:106-108
    • (2002) Nucleic Acids Res , vol.30 , pp. 106-108
  • 17
    • 0034887203 scopus 로고    scopus 로고
    • Creating the gene ontology resource: Design and implementation
    • The Gene Ontology Consortium 2001 Creating the gene ontology resource: design and implementation. Genome Res 11:1425-1433
    • (2001) Genome Res , vol.11 , pp. 1425-1433
  • 19
    • 0030966330 scopus 로고    scopus 로고
    • A review of phenotypes of Saccharomyces cerevisiae
    • Hamsey M 1997 A review of phenotypes of Saccharomyces cerevisiae. Yeast 1:1099-1133.
    • (1997) Yeast , vol.1 , pp. 1099-1133
    • Hamsey, M.1
  • 21
    • 0035872768 scopus 로고    scopus 로고
    • Program description: Strategies for biological annotation of mammalian systems: implementing gene ontologies in mouse genome informatics
    • Hill DP, Davis AP, Richardson JE et al 2001 Program description: strategies for biological annotation of mammalian systems: implementing gene ontologies in mouse genome informatics. Genomics 74:121-128
    • (2001) Genomics , vol.74 , pp. 121-128
    • Hill, D.P.1    Davis, A.P.2    Richardson, J.E.3
  • 22
    • 0036907158 scopus 로고    scopus 로고
    • Extension and integration of the Gene Ontology (GO): Combining GO vocabularies with external vocabularies
    • in press
    • Hill DP, Richardson JE, Blake JA, Ringwald M 2002 Extension and integration of the Gene Ontology (GO): combining GO vocabularies with external vocabularies. Genome Res, in press
    • (2002) Genome Res
    • Hill, D.P.1    Richardson, J.E.2    Blake, J.A.3    Ringwald, M.4
  • 23
    • 0034040680 scopus 로고    scopus 로고
    • An ontology for biological function based on molecular interactions
    • Karp PD 2000 An ontology for biological function based on molecular interactions. Bioinformatics 16:269-285
    • (2000) Bioinformatics , vol.16 , pp. 269-285
    • Karp, P.D.1
  • 27
    • 0034776419 scopus 로고    scopus 로고
    • Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT
    • Kretschmann E, Fleischmann W, Apweiler R 2001 Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT. Bioinformatics 17:920-926
    • (2001) Bioinformatics , vol.17 , pp. 920-926
    • Kretschmann, E.1    Fleischmann, W.2    Apweiler, R.3
  • 28
    • 0033042327 scopus 로고    scopus 로고
    • Whole-genome sequence annotation 'going wrong with confidence'
    • Kyrpides NC, Ouzounis CA 1998 Whole-genome sequence annotation 'going wrong with confidence'. Molec Microbiol 32:886-887
    • (1998) Molec Microbiol , vol.32 , pp. 886-887
    • Kyrpides, N.C.1    Ouzounis, C.A.2
  • 32
    • 0032893083 scopus 로고    scopus 로고
    • MIPS: A database for genomes and protein sequences
    • Mewes HW, Heumann K, Kaps A et al 1999 MIPS: a database for genomes and protein sequences. Nucleic Acids Res 27:44-48
    • (1999) Nucleic Acids Res , vol.27 , pp. 44-48
    • Mewes, H.W.1    Heumann, K.2    Kaps, A.3
  • 34
    • 0012395322 scopus 로고    scopus 로고
    • Nouns in WordNet
    • Fellbaum C (ed) MIT Press, Cambridge, MA
    • Miller GA 1998 Nouns in WordNet. In: Fellbaum C (ed) WordNet. An electronic lexical database. MIT Press, Cambridge, MA, p 23-46
    • (1998) WordNet. An Electronic Lexical Database , pp. 23-46
    • Miller, G.A.1
  • 35
    • 24944474149 scopus 로고    scopus 로고
    • OpenSource 2001 url: www.opensource.org/
    • (2001)
  • 37
    • 0033977576 scopus 로고    scopus 로고
    • WIT: Integrated system for high-level throughput genome sequence analysis and metabolic reconstruction
    • Overbeek R, Larsen N, Pusch GD et al 2000 WIT: integrated system for high-level throughput genome sequence analysis and metabolic reconstruction. Nucleic Acids Res 28:123-125
    • (2000) Nucleic Acids Res , vol.28 , pp. 123-125
    • Overbeek, R.1    Larsen, N.2    Pusch, G.D.3
  • 38
    • 0034756358 scopus 로고    scopus 로고
    • DIAN: A novel algorithm for genome ontological classification
    • Pouliot Y, Gao J, Su QJ, Liu GG, Ling YB 2001 DIAN: a novel algorithm for genome ontological classification. Genome Res 11:1766-1779
    • (2001) Genome Res , vol.11 , pp. 1766-1779
    • Pouliot, Y.1    Gao, J.2    Su, Q.J.3    Liu, G.G.4    Ling, Y.B.5
  • 39
    • 2942533834 scopus 로고    scopus 로고
    • The formalization of WordNet by methods of relational concept analysis
    • Fellbaum C (ed) MIT Press, Cambridge, MA
    • Priss UE 1998 The formalization of WordNet by methods of relational concept analysis. In: Fellbaum C (ed) WordNet. An electronic lexical database. MIT Press, Cambridge, MA, p 179-190
    • (1998) WordNet. An Electronic Lexical Database , pp. 179-190
    • Priss, U.E.1
  • 40
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • Pruitt KD, Maglott DR 2001 RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res 29:137-140
    • (2001) Nucleic Acids Res , vol.29 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 41
    • 0036144742 scopus 로고    scopus 로고
    • Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature
    • Raychaudhuri S, Chang JT, Sutphin PD, Altman RB 2002 Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature. Genome Res 12:203-214
    • (2002) Genome Res , vol.12 , pp. 203-214
    • Raychaudhuri, S.1    Chang, J.T.2    Sutphin, P.D.3    Altman, R.B.4
  • 42
    • 0032102745 scopus 로고
    • Systems for categorizing functions of gene products
    • Riley M 1988 Systems for categorizing functions of gene products. Curr Opin Struct Biol 8: 388-392
    • (1988) Curr Opin Struct Biol , vol.8 , pp. 388-392
    • Riley, M.1
  • 43
    • 0027133165 scopus 로고
    • Functions of the gene products of Escherichia coli
    • Riley M 1993 Functions of the gene products of Escherichia coli. Microbiol Rev 57:862-952
    • (1993) Microbiol Rev , vol.57 , pp. 862-952
    • Riley, M.1
  • 45
    • 0034576023 scopus 로고    scopus 로고
    • GALEN's model of parts and wholes: Experience and comparisons
    • Los Angeles. Hanley & Belfus Inc. Philadelphia, CA
    • Rogers JE, Rector AL 2000 GALEN's model of parts and wholes: Experience and comparisons. Annual Fall Symposium of American Medical Informatics Assocation, Los Angeles. Hanley & Belfus Inc. Philadelphia, CA, p 714-718
    • (2000) Annual Fall Symposium of American Medical Informatics Assocation , pp. 714-718
    • Rogers, J.E.1    Rector, A.L.2
  • 46
    • 0012041760 scopus 로고    scopus 로고
    • Integrating and exploiting large-scale, heterogeneous and autonomous databases with an ontology for molecular biology
    • Hofestaedt R, Lim H (eds) Shaker Verlag, Aachen
    • Schulze-Kremer S 1997 Integrating and exploiting large-scale, heterogeneous and autonomous databases with an ontology for molecular biology. In: Hofestaedt R, Lim H (eds) Molecular bioinformatics - The human genome project. Shaker Verlag, Aachen, p 43-46
    • (1997) Molecular Bioinformatics - The Human Genome Project , pp. 43-46
    • Schulze-Kremer, S.1
  • 48
    • 0034570532 scopus 로고    scopus 로고
    • Multifun, a multifunctional classification scheme for Escherichia coli K-12 gene products
    • Serres MH, Riley M 2000 Multifun, a multifunctional classification scheme for Escherichia coli K-12 gene products. Microb Comp Genomics 5:205-222
    • (2000) Microb Comp Genomics , vol.5 , pp. 205-222
    • Serres, M.H.1    Riley, M.2
  • 51
    • 0034117360 scopus 로고    scopus 로고
    • TAMBIS: Transparent access to multiple bioinformatics information sources
    • Stevens R, Baker P, Bechhofer S et al 2000 TAMBIS: transparent access to multiple bioinformatics information sources. Bioinformatics 16:184-183
    • (2000) Bioinformatics , vol.16 , pp. 184-1183
    • Stevens, R.1    Baker, P.2    Bechhofer, S.3
  • 54
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Venter JC, Adams MD, Meyers EW et al 2001 The sequence of the human genome. Science 291:1304-1351
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1    Adams, M.D.2    Meyers, E.W.3
  • 55
    • 0033957466 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Wheeler DL, Chappey C, Lash AE et al 2000 Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 28:10-14
    • (2000) Nucleic Acids Res , vol.28 , pp. 10-14
    • Wheeler, D.L.1    Chappey, C.2    Lash, A.E.3
  • 57
    • 0036100170 scopus 로고    scopus 로고
    • Automatic large scale protein annotation through Gene Ontology
    • Xie H, Wasserman A, Levine Z et al 2002 Automatic large scale protein annotation through Gene Ontology. Genome Res 12:785-794
    • (2002) Genome Res , vol.12 , pp. 785-794
    • Xie, H.1    Wasserman, A.2    Levine, Z.3
  • 58
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan - An integration platform for the signature-recognition methods in InterPro
    • Zdobnov EM, Apweiler R 2001 InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17:847-848
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.