-
1
-
-
50249183899
-
Autophagy revisited: a conversation with Christian de Duve
-
Klionsky DJ (2008) Autophagy revisited: a conversation with Christian de Duve. Autophagy 4, 740-743.
-
(2008)
Autophagy
, vol.4
, pp. 740-743
-
-
Klionsky, D.J.1
-
2
-
-
84891745088
-
Historical landmarks of autophagy research
-
Ohsumi Y (2014) Historical landmarks of autophagy research. Cell Res 24, 9-23.
-
(2014)
Cell Res
, vol.24
, pp. 9-23
-
-
Ohsumi, Y.1
-
3
-
-
0032563798
-
A protein conjugation system essential for autophagy
-
Mizushima N, Noda T, Yoshimori T, et al. (1998) A protein conjugation system essential for autophagy. Nature 395, 395-398.
-
(1998)
Nature
, vol.395
, pp. 395-398
-
-
Mizushima, N.1
Noda, T.2
Yoshimori, T.3
-
5
-
-
0035286734
-
Molecular dissection of autophagy: two ubiquitin-like systems
-
Ohsumi Y (2001) Molecular dissection of autophagy: two ubiquitin-like systems. Nat Rev Mol Cell Biol 2, 211-216.
-
(2001)
Nat Rev Mol Cell Biol
, vol.2
, pp. 211-216
-
-
Ohsumi, Y.1
-
6
-
-
82955247613
-
Insights into noncanonical E1 enzyme activation from the structure of autophagic E1 Atg7 with Atg8
-
Hong SB, Kim BW, Lee KE, et al. (2011) Insights into noncanonical E1 enzyme activation from the structure of autophagic E1 Atg7 with Atg8. Nat Struct Mol Biol 18, 1323-1330.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 1323-1330
-
-
Hong, S.B.1
Kim, B.W.2
Lee, K.E.3
-
7
-
-
84936846861
-
Structure of the Atg101-Atg13 complex reveals essential roles of Atg101 in autophagy initiation
-
Suzuki H, Kaizuka T, Mizushima N and Noda NN (2015) Structure of the Atg101-Atg13 complex reveals essential roles of Atg101 in autophagy initiation. Nat Struct Mol Biol 22, 572-580.
-
(2015)
Nat Struct Mol Biol
, vol.22
, pp. 572-580
-
-
Suzuki, H.1
Kaizuka, T.2
Mizushima, N.3
Noda, N.N.4
-
8
-
-
84901986623
-
Structural basis of starvation-induced assembly of the autophagy initiation complex
-
Fujioka Y, Suzuki SW, Yamamoto H, et al. (2014) Structural basis of starvation-induced assembly of the autophagy initiation complex. Nat Struct Mol Biol 21, 513-521.
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 513-521
-
-
Fujioka, Y.1
Suzuki, S.W.2
Yamamoto, H.3
-
10
-
-
84898639632
-
Atomistic autophagy: the structures of cellular self-digestion
-
Hurley JH and Schulman BA (2014) Atomistic autophagy: the structures of cellular self-digestion. Cell 157, 300-311.
-
(2014)
Cell
, vol.157
, pp. 300-311
-
-
Hurley, J.H.1
Schulman, B.A.2
-
11
-
-
84898757170
-
Dynamic regulation of macroautophagy by distinctive ubiquitin-like proteins
-
Klionsky DJ and Schulman BA (2014) Dynamic regulation of macroautophagy by distinctive ubiquitin-like proteins. Nat Struct Mol Biol 21, 336-345.
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 336-345
-
-
Klionsky, D.J.1
Schulman, B.A.2
-
12
-
-
84870815734
-
Noncanonical E2 recruitment by the autophagy E1 revealed by Atg7-Atg3 and Atg7-Atg10 structures
-
Kaiser SE, Mao K, Taherbhoy AM, et al. (2012) Noncanonical E2 recruitment by the autophagy E1 revealed by Atg7-Atg3 and Atg7-Atg10 structures. Nat Struct Mol Biol 19, 1242-1249.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 1242-1249
-
-
Kaiser, S.E.1
Mao, K.2
Taherbhoy, A.M.3
-
13
-
-
84877336960
-
Structures of Atg7-Atg3 and Atg7-Atg10 reveal noncanonical mechanisms of E2 recruitment by the autophagy E1
-
Kaiser SE, Qiu Y, Coats JE, Mao K, Klionsky DJ and Schulman BA (2013) Structures of Atg7-Atg3 and Atg7-Atg10 reveal noncanonical mechanisms of E2 recruitment by the autophagy E1. Autophagy 9, 778-780.
-
(2013)
Autophagy
, vol.9
, pp. 778-780
-
-
Kaiser, S.E.1
Qiu, Y.2
Coats, J.E.3
Mao, K.4
Klionsky, D.J.5
Schulman, B.A.6
-
14
-
-
84923329832
-
Insights into autophagosome maturation revealed by the structures of ATG5 with its interacting partners
-
Kim JH, Hong SB, Lee JK, et al. (2015) Insights into autophagosome maturation revealed by the structures of ATG5 with its interacting partners. Autophagy 11, 75-87.
-
(2015)
Autophagy
, vol.11
, pp. 75-87
-
-
Kim, J.H.1
Hong, S.B.2
Lee, J.K.3
-
15
-
-
84941941753
-
Post-translationally-modified structures in the autophagy machinery: an integrative perspective
-
Popelka H and Klionsky DJ (2015) Post-translationally-modified structures in the autophagy machinery: an integrative perspective. FEBS J 282, 3474-3488.
-
(2015)
FEBS J
, vol.282
, pp. 3474-3488
-
-
Popelka, H.1
Klionsky, D.J.2
-
16
-
-
84928263960
-
Swapping of interaction partners with ATG5 for autophagosome maturation
-
Kim JH and Song HK (2015) Swapping of interaction partners with ATG5 for autophagosome maturation. BMB Rep 48, 129-130.
-
(2015)
BMB Rep
, vol.48
, pp. 129-130
-
-
Kim, J.H.1
Song, H.K.2
-
17
-
-
78751672975
-
Autophagy in immunity and inflammation
-
Levine B, Mizushima N and Virgin HW (2011) Autophagy in immunity and inflammation. Nature 469, 323-335.
-
(2011)
Nature
, vol.469
, pp. 323-335
-
-
Levine, B.1
Mizushima, N.2
Virgin, H.W.3
-
18
-
-
77956404377
-
Eaten alive: a history of macroautophagy
-
Yang Z and Klionsky DJ (2010) Eaten alive: a history of macroautophagy. Nat Cell Biol 12, 814-822.
-
(2010)
Nat Cell Biol
, vol.12
, pp. 814-822
-
-
Yang, Z.1
Klionsky, D.J.2
-
20
-
-
77956410115
-
Selective autophagy: ubiquitin-mediated recognition and beyond
-
Kraft C, Peter M and Hofmann K (2010) Selective autophagy: ubiquitin-mediated recognition and beyond. Nat Cell Biol 12, 836-841.
-
(2010)
Nat Cell Biol
, vol.12
, pp. 836-841
-
-
Kraft, C.1
Peter, M.2
Hofmann, K.3
-
21
-
-
34548259958
-
p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.
-
Pankiv S, Clausen TH, Lamark T, et al. (2007) p62/SQSTM1. binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy. J Biol Chem 282, 24131-24145.
-
(2007)
J Biol Chem
, vol.282
, pp. 24131-24145
-
-
Pankiv, S.1
Clausen, T.H.2
Lamark, T.3
-
22
-
-
60849099049
-
A role for NBR1 in autophagosomal degradation of ubiquitinated substrates
-
Kirkin V, Lamark T, Sou YS, et al. (2009) A role for NBR1 in autophagosomal degradation of ubiquitinated substrates. Mol Cell 33, 505-516.
-
(2009)
Mol Cell
, vol.33
, pp. 505-516
-
-
Kirkin, V.1
Lamark, T.2
Sou, Y.S.3
-
23
-
-
84876085831
-
Ubiquitin-independent function of optineurin in autophagic clearance of protein aggregates
-
Korac J, Schaeffer V, Kovacevic I, et al. (2013) Ubiquitin-independent function of optineurin in autophagic clearance of protein aggregates. J Cell Sci 126, 580-592.
-
(2013)
J Cell Sci
, vol.126
, pp. 580-592
-
-
Korac, J.1
Schaeffer, V.2
Kovacevic, I.3
-
24
-
-
84905491871
-
Autophagic clearance of polyQ proteins mediated by ubiquitin-Atg8 adaptors of the conserved CUET protein family
-
Lu K, Psakhye I and Jentsch S (2014) Autophagic clearance of polyQ proteins mediated by ubiquitin-Atg8 adaptors of the conserved CUET protein family. Cell 158, 549-563.
-
(2014)
Cell
, vol.158
, pp. 549-563
-
-
Lu, K.1
Psakhye, I.2
Jentsch, S.3
-
25
-
-
84876296881
-
Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization
-
Sarraf SA, Raman M, Guarani-Pereira V, et al. (2013) Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization. Nature 496, 372-376.
-
(2013)
Nature
, vol.496
, pp. 372-376
-
-
Sarraf, S.A.1
Raman, M.2
Guarani-Pereira, V.3
-
26
-
-
84908065760
-
Optineurin is an autophagy receptor for damaged mitochondria in parkin-mediated mitophagy that is disrupted by an ALS-linked mutation
-
Wong YC and Holzbaur EL (2014) Optineurin is an autophagy receptor for damaged mitochondria in parkin-mediated mitophagy that is disrupted by an ALS-linked mutation. Proc Natl Acad Sci U S A 111, E4439-4448.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. E4439-4448
-
-
Wong, Y.C.1
Holzbaur, E.L.2
-
27
-
-
84939804206
-
The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy
-
Lazarou M, Sliter DA, Kane LA, et al. (2015) The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy. Nature 524, 309-314.
-
(2015)
Nature
, vol.524
, pp. 309-314
-
-
Lazarou, M.1
Sliter, D.A.2
Kane, L.A.3
-
28
-
-
74049153002
-
Nix is a selective autophagy receptor for mitochondrial clearance
-
Novak I, Kirkin V, McEwan DG, et al. (2010) Nix is a selective autophagy receptor for mitochondrial clearance. EMBO Rep 11, 45-51.
-
(2010)
EMBO Rep
, vol.11
, pp. 45-51
-
-
Novak, I.1
Kirkin, V.2
McEwan, D.G.3
-
29
-
-
77957683915
-
Bnip3-mediated mitochondrial autophagy is independent of the mitochondrial permeability transition pore
-
Quinsay MN, Thomas RL, Lee Y and Gustafsson AB (2010) Bnip3-mediated mitochondrial autophagy is independent of the mitochondrial permeability transition pore. Autophagy 6, 855-862.
-
(2010)
Autophagy
, vol.6
, pp. 855-862
-
-
Quinsay, M.N.1
Thomas, R.L.2
Lee, Y.3
Gustafsson, A.B.4
-
30
-
-
67650264633
-
Atg32 is a mitochondrial protein that confers selectivity during mitophagy
-
Kanki T, Wang K, Cao Y, Baba M and Klionsky DJ (2009) Atg32 is a mitochondrial protein that confers selectivity during mitophagy. Dev Cell 17, 98-109.
-
(2009)
Dev Cell
, vol.17
, pp. 98-109
-
-
Kanki, T.1
Wang, K.2
Cao, Y.3
Baba, M.4
Klionsky, D.J.5
-
31
-
-
67650246357
-
Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy
-
Okamoto K, Kondo-Okamoto N and Ohsumi Y (2009) Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy. Dev Cell 17, 87-97.
-
(2009)
Dev Cell
, vol.17
, pp. 87-97
-
-
Okamoto, K.1
Kondo-Okamoto, N.2
Ohsumi, Y.3
-
32
-
-
84861733247
-
Microtubule-associated protein 1 light chain 3 (LC3) interacts with Bnip3 protein to selectively remove endoplasmic reticulum and mitochondria via autophagy.
-
Hanna RA, Quinsay MN, Orogo AM, Giang K, Rikka S and Gustafsson AB (2012) Microtubule-associated protein 1. light chain 3 (LC3) interacts with Bnip3 protein to selectively remove endoplasmic reticulum and mitochondria via autophagy. J Biol Chem 287, 19094-19104.
-
(2012)
J Biol Chem
, vol.287
, pp. 19094-19104
-
-
Hanna, R.A.1
Quinsay, M.N.2
Orogo, A.M.3
Giang, K.4
Rikka, S.5
Gustafsson, A.B.6
-
33
-
-
84876345355
-
NBR1 acts as an autophagy receptor for peroxisomes
-
Deosaran E, Larsen KB, Hua R, et al. (2013) NBR1 acts as an autophagy receptor for peroxisomes. J Cell Sci 126, 939-952.
-
(2013)
J Cell Sci
, vol.126
, pp. 939-952
-
-
Deosaran, E.1
Larsen, K.B.2
Hua, R.3
-
34
-
-
84863843241
-
Pex3-anchored Atg36 tags peroxisomes for degradation in Saccharomyces cerevisiae
-
Motley AM, Nuttall JM and Hettema EH (2012) Pex3-anchored Atg36 tags peroxisomes for degradation in Saccharomyces cerevisiae. EMBO J 31, 2852-2868.
-
(2012)
EMBO J
, vol.31
, pp. 2852-2868
-
-
Motley, A.M.1
Nuttall, J.M.2
Hettema, E.H.3
-
35
-
-
80053338210
-
Starch-binding do main-containing protein 1 (Stbd1) and glycogen metabolism: Identification of the Atg8 family interacting motif (AIM) in Stbd1 required for interaction with GABARAPL1
-
Jiang S, Wells CD and Roach PJ (2011) Starch-binding do main-containing protein 1 (Stbd1) and glycogen metabolism: Identification of the Atg8 family interacting motif (AIM) in Stbd1 required for interaction with GABARAPL1. Biochem Biophys Res Commun 413, 420-425.
-
(2011)
Biochem Biophys Res Commun
, vol.413
, pp. 420-425
-
-
Jiang, S.1
Wells, C.D.2
Roach, P.J.3
-
36
-
-
43049138051
-
Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease
-
Kraft C, Deplazes A, Sohrmann M and Peter M (2008) Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease. Nat Cell Biol 10, 602-610.
-
(2008)
Nat Cell Biol
, vol.10
, pp. 602-610
-
-
Kraft, C.1
Deplazes, A.2
Sohrmann, M.3
Peter, M.4
-
37
-
-
84934449989
-
Regulation of endoplasmic reticulum turnover by selective autophagy
-
Khaminets A, Heinrich T, Mari M, et al. (2015) Regulation of endoplasmic reticulum turnover by selective autophagy. Nature 522, 354-358.
-
(2015)
Nature
, vol.522
, pp. 354-358
-
-
Khaminets, A.1
Heinrich, T.2
Mari, M.3
-
38
-
-
70350646901
-
Mutations in FAM134B, encoding a newly identified Golgi protein, cause severe sensory and autonomic neuropathy
-
Kurth I, Pamminger T, Hennings JC, et al. (2009) Mutations in FAM134B, encoding a newly identified Golgi protein, cause severe sensory and autonomic neuropathy. Nat Genet 41, 1179-1181.
-
(2009)
Nat Genet
, vol.41
, pp. 1179-1181
-
-
Kurth, I.1
Pamminger, T.2
Hennings, J.C.3
-
39
-
-
84934449988
-
Receptormediated selective autophagy degrades the endoplasmic reticulum and the nucleus
-
Mochida K, Oikawa Y, Kimura Y, et al. (2015) Receptormediated selective autophagy degrades the endoplasmic reticulum and the nucleus. Nature 522, 359-362.
-
(2015)
Nature
, vol.522
, pp. 359-362
-
-
Mochida, K.1
Oikawa, Y.2
Kimura, Y.3
-
40
-
-
65949095803
-
Autophagy regulates lipid metabolism
-
Singh R, Kaushik S, Wang Y, et al. (2009) Autophagy regulates lipid metabolism. Nature 458, 1131-1135.
-
(2009)
Nature
, vol.458
, pp. 1131-1135
-
-
Singh, R.1
Kaushik, S.2
Wang, Y.3
-
41
-
-
74049126112
-
The adaptor protein p62/SQSTM1 targets invading bacteria to the autophagy pathway
-
Zheng YT, Shahnazari S, Brech A, Lamark T, Johansen T and Brumell JH (2009) The adaptor protein p62/SQSTM1 targets invading bacteria to the autophagy pathway. J Immunol 183, 5909-5916.
-
(2009)
J Immunol
, vol.183
, pp. 5909-5916
-
-
Zheng, Y.T.1
Shahnazari, S.2
Brech, A.3
Lamark, T.4
Johansen, T.5
Brumell, J.H.6
-
42
-
-
70350450808
-
The TBK1 adaptor and autophagy receptor NDP52 restricts the proliferation of ubiquitin-coated bacteria
-
Thurston TL, Ryzhakov G, Bloor S, von Muhlinen N and Randow F (2009) The TBK1 adaptor and autophagy receptor NDP52 restricts the proliferation of ubiquitin-coated bacteria. Nat Immunol 10, 1215-1221.
-
(2009)
Nat Immunol
, vol.10
, pp. 1215-1221
-
-
Thurston, T.L.1
Ryzhakov, G.2
Bloor, S.3
von Muhlinen, N.4
Randow, F.5
-
43
-
-
79960804104
-
Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth
-
Wild P, Farhan H, McEwan DG, et al. (2011) Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth. Science 333, 228-233.
-
(2011)
Science
, vol.333
, pp. 228-233
-
-
Wild, P.1
Farhan, H.2
McEwan, D.G.3
-
44
-
-
84857071710
-
Galectin 8 targets damaged vesicles for autophagy to defend cells against bacterial invasion
-
Thurston TL, Wandel MP, von Muhlinen N, Foeglein A and Randow F (2012) Galectin 8 targets damaged vesicles for autophagy to defend cells against bacterial invasion. Nature 482, 414-418.
-
(2012)
Nature
, vol.482
, pp. 414-418
-
-
Thurston, T.L.1
Wandel, M.P.2
von Muhlinen, N.3
Foeglein, A.4
Randow, F.5
-
45
-
-
77954237882
-
Network organization of the human autophagy system
-
Behrends C, Sowa ME, Gygi SP and Harper JW (2010) Network organization of the human autophagy system. Nature 466, 68-76.
-
(2010)
Nature
, vol.466
, pp. 68-76
-
-
Behrends, C.1
Sowa, M.E.2
Gygi, S.P.3
Harper, J.W.4
-
47
-
-
84941567317
-
The receptor proteins: pivotal roles in selective autophagy
-
Xu Z, Yang L, Xu S, Zhang Z and Cao Y (2015) The receptor proteins: pivotal roles in selective autophagy. Acta Biochim Biophys Sin (Shanghai) 47, 571-580.
-
(2015)
Acta Biochim Biophys Sin (Shanghai)
, vol.47
, pp. 571-580
-
-
Xu, Z.1
Yang, L.2
Xu, S.3
Zhang, Z.4
Cao, Y.5
-
48
-
-
84892161646
-
The Atg8 family: multifunctional ubiquitin-like key regulators of autophagy
-
Slobodkin MR and Elazar Z (2013) The Atg8 family: multifunctional ubiquitin-like key regulators of autophagy. Essays Biochem 55, 51-64.
-
(2013)
Essays Biochem
, vol.55
, pp. 51-64
-
-
Slobodkin, M.R.1
Elazar, Z.2
-
49
-
-
27944504351
-
p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death.
-
Bjorkoy G, Lamark T, Brech A, et al. (2005) p62/SQSTM1. forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death. J Cell Biol 171, 603-614.
-
(2005)
J Cell Biol
, vol.171
, pp. 603-614
-
-
Bjorkoy, G.1
Lamark, T.2
Brech, A.3
-
50
-
-
33846692198
-
Signal integration and diversification through the p62 scaffold protein
-
Moscat J, Diaz-Meco MT and Wooten MW (2007) Signal integration and diversification through the p62 scaffold protein. Trends Biochem Sci 32, 95-100.
-
(2007)
Trends Biochem Sci
, vol.32
, pp. 95-100
-
-
Moscat, J.1
Diaz-Meco, M.T.2
Wooten, M.W.3
-
51
-
-
0035919837
-
Ubiquitinbinding protein p62 is present in neuronal and glial inclusions in human tauopathies and synucleinopathies
-
Kuusisto E, Salminen A and Alafuzoff I (2001) Ubiquitinbinding protein p62 is present in neuronal and glial inclusions in human tauopathies and synucleinopathies. Neuroreport 12, 2085-2090.
-
(2001)
Neuroreport
, vol.12
, pp. 2085-2090
-
-
Kuusisto, E.1
Salminen, A.2
Alafuzoff, I.3
-
52
-
-
0036144410
-
p62 Is a common component of cytoplasmic inclusions in protein aggregation diseases
-
Zatloukal K, Stumptner C, Fuchsbichler A, et al. (2002) p62 Is a common component of cytoplasmic inclusions in protein aggregation diseases. Am J Pathol 160, 255-263.
-
(2002)
Am J Pathol
, vol.160
, pp. 255-263
-
-
Zatloukal, K.1
Stumptner, C.2
Fuchsbichler, A.3
-
53
-
-
77649265091
-
The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1
-
Komatsu M, Kurokawa H, Waguri S, et al. (2010) The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1. Nat Cell Biol 12, 213-223.
-
(2010)
Nat Cell Biol
, vol.12
, pp. 213-223
-
-
Komatsu, M.1
Kurokawa, H.2
Waguri, S.3
-
54
-
-
57249083972
-
Structural basis of target recognition by Atg8/LC3 during selective autophagy
-
Noda NN, Kumeta H, Nakatogawa H, et al. (2008) Structural basis of target recognition by Atg8/LC3 during selective autophagy. Genes Cells 13, 1211-1218.
-
(2008)
Genes Cells
, vol.13
, pp. 1211-1218
-
-
Noda, N.N.1
Kumeta, H.2
Nakatogawa, H.3
-
55
-
-
0028288548
-
A novel gene encoding a B-box protein within the BRCA1 region at 17q21.1
-
Campbell IG, Nicolai HM, Foulkes WD, et al. (1994) A novel gene encoding a B-box protein within the BRCA1 region at 17q21.1. Hum Mol Genet 3, 589-594.
-
(1994)
Hum Mol Genet
, vol.3
, pp. 589-594
-
-
Campbell, I.G.1
Nicolai, H.M.2
Foulkes, W.D.3
-
56
-
-
67650517556
-
NBR1 and p62 as cargo receptors for selective autophagy of ubiquitinated targets.
-
Lamark T, Kirkin V, Dikic I and Johansen T (2009) NBR1. and p62 as cargo receptors for selective autophagy of ubiquitinated targets. Cell Cycle 8, 1986-1990.
-
(2009)
Cell Cycle
, vol.8
, pp. 1986-1990
-
-
Lamark, T.1
Kirkin, V.2
Dikic, I.3
Johansen, T.4
-
57
-
-
0029024780
-
Molecular characterization of NDP52, a novel protein of the nuclear domain 10, which is redistributed upon virus infection and interferon treatment
-
Korioth F, Gieffers C, Maul GG and Frey J (1995) Molecular characterization of NDP52, a novel protein of the nuclear domain 10, which is redistributed upon virus infection and interferon treatment. J Cell Biol 130, 1-13.
-
(1995)
J Cell Biol
, vol.130
, pp. 1-13
-
-
Korioth, F.1
Gieffers, C.2
Maul, G.G.3
Frey, J.4
-
58
-
-
84869080400
-
LC3C, bound selectively by a noncanonical LIR motif in NDP52, is required for antibacterial autophagy
-
von Muhlinen N, Akutsu M, Ravenhill BJ, et al. (2012) LC3C, bound selectively by a noncanonical LIR motif in NDP52, is required for antibacterial autophagy. Mol Cell 48, 329-342.
-
(2012)
Mol Cell
, vol.48
, pp. 329-342
-
-
von Muhlinen, N.1
Akutsu, M.2
Ravenhill, B.J.3
-
59
-
-
84953868676
-
Molecular basis of ubiquitin recognition by the autophagy receptor CALCOCO2
-
Xie X, Li F, Wang Y, et al. (2015) Molecular basis of ubiquitin recognition by the autophagy receptor CALCOCO2. Autophagy 11, 1775-1789.
-
(2015)
Autophagy
, vol.11
, pp. 1775-1789
-
-
Xie, X.1
Li, F.2
Wang, Y.3
-
60
-
-
84875908545
-
Structural basis for recognition of autophagic receptor NDP52 by the sugar receptor galectin-8
-
Kim BW, Hong SB, Kim JH, Kwon do H and Song HK (2013) Structural basis for recognition of autophagic receptor NDP52 by the sugar receptor galectin-8. Nat Commun 4, 1613.
-
(2013)
Nat Commun
, vol.4
, pp. 1613
-
-
Kim, B.W.1
Hong, S.B.2
Kim, J.H.3
Kwon do, H.4
Song, H.K.5
-
61
-
-
84865220380
-
Extracellular M tuberculosis DNA targets bacteria for autophagy by activating the host DNA-sensing pathway.
-
Watson RO, Manzanillo PS and Cox JS (2012) Extracellular M. tuberculosis DNA targets bacteria for autophagy by activating the host DNA-sensing pathway. Cell 150, 803-815.
-
(2012)
Cell
, vol.150
, pp. 803-815
-
-
Watson, R.O.1
Manzanillo, P.S.2
Cox, J.S.3
-
62
-
-
79960670161
-
p62 and NDP52 proteins target intracytosolic Shigella and Listeria to different autophagy pathways.
-
Mostowy S, Sancho-Shimizu V, Hamon MA, et al. (2011) p62. and NDP52 proteins target intracytosolic Shigella and Listeria to different autophagy pathways. J Biol Chem 286, 26987-26995.
-
(2011)
J Biol Chem
, vol.286
, pp. 26987-26995
-
-
Mostowy, S.1
Sancho-Shimizu, V.2
Hamon, M.A.3
-
64
-
-
80052197913
-
TBK1 mediates crosstalk between the innate immune response and autophagy
-
Weidberg H and Elazar Z (2011) TBK1 mediates crosstalk between the innate immune response and autophagy. Sci Signal 4, pe39.
-
(2011)
Sci Signal
, vol.4
, pp. pe39
-
-
Weidberg, H.1
Elazar, Z.2
-
65
-
-
84867103427
-
Autophagy receptors link myosin VI to autophagosomes to mediate Tom1-dependent autophagosome maturation and fusion with the lysosome
-
Tumbarello DA, Waxse BJ, Arden SD, Bright NA, Kendrick-Jones J and Buss F (2012) Autophagy receptors link myosin VI to autophagosomes to mediate Tom1-dependent autophagosome maturation and fusion with the lysosome. Nat Cell Biol 14, 1024-1035.
-
(2012)
Nat Cell Biol
, vol.14
, pp. 1024-1035
-
-
Tumbarello, D.A.1
Waxse, B.J.2
Arden, S.D.3
Bright, N.A.4
Kendrick-Jones, J.5
Buss, F.6
-
66
-
-
84951930787
-
The PINK1-PARKIN Mitochondrial Ubiquitylation Pathway Drives a Program of OPTN/NDP52 Recruitment and TBK1 Activation to Promote Mitophagy
-
Heo JM, Ordureau A, Paulo JA, Rinehart J and Harper JW (2015) The PINK1-PARKIN Mitochondrial Ubiquitylation Pathway Drives a Program of OPTN/NDP52 Recruitment and TBK1 Activation to Promote Mitophagy. Mol Cell 60, 7-20.
-
(2015)
Mol Cell
, vol.60
, pp. 7-20
-
-
Heo, J.M.1
Ordureau, A.2
Paulo, J.A.3
Rinehart, J.4
Harper, J.W.5
-
67
-
-
67549101188
-
Role of BNIP3 and NIX in cell death, autophagy, and mitophagy
-
Zhang J and Ney PA (2009) Role of BNIP3 and NIX in cell death, autophagy, and mitophagy. Cell Death Differ 16, 939-946.
-
(2009)
Cell Death Differ
, vol.16
, pp. 939-946
-
-
Zhang, J.1
Ney, P.A.2
-
68
-
-
77953712088
-
Nix, a receptor protein for mitophagy in mammals
-
Kanki T (2010) Nix, a receptor protein for mitophagy in mammals. Autophagy 6, 433-435.
-
(2010)
Autophagy
, vol.6
, pp. 433-435
-
-
Kanki, T.1
-
69
-
-
77950484269
-
Atg8-family interacting motif crucial for selective autophagy
-
Noda NN, Ohsumi Y and Inagaki F (2010) Atg8-family interacting motif crucial for selective autophagy. FEBS Lett 584, 1379-1385.
-
(2010)
FEBS Lett
, vol.584
, pp. 1379-1385
-
-
Noda, N.N.1
Ohsumi, Y.2
Inagaki, F.3
-
70
-
-
77953122645
-
LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis
-
Weidberg H, Shvets E, Shpilka T, Shimron F, Shinder V and Elazar Z (2010) LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis. EMBO J 29, 1792-1802.
-
(2010)
EMBO J
, vol.29
, pp. 1792-1802
-
-
Weidberg, H.1
Shvets, E.2
Shpilka, T.3
Shimron, F.4
Shinder, V.5
Elazar, Z.6
-
71
-
-
53049103308
-
Structural basis for sorting mechanism of p62 in selective autophagy
-
Ichimura Y, Kumanomidou T, Sou YS, et al. (2008) Structural basis for sorting mechanism of p62 in selective autophagy. J Biol Chem 283, 22847-22857.
-
(2008)
J Biol Chem
, vol.283
, pp. 22847-22857
-
-
Ichimura, Y.1
Kumanomidou, T.2
Sou, Y.S.3
-
72
-
-
79959498837
-
Characterization of the interaction of GABARAPL-1 with the LIR motif of NBR1
-
Rozenknop A, Rogov VV, Rogova NY, et al. (2011) Characterization of the interaction of GABARAPL-1 with the LIR motif of NBR1. J Mol Biol 410, 477-487.
-
(2011)
J Mol Biol
, vol.410
, pp. 477-487
-
-
Rozenknop, A.1
Rogov, V.V.2
Rogova, N.Y.3
-
73
-
-
84883369848
-
Structural basis for phosphorylation-triggered autophagic clearance of Salmonella
-
Rogov VV, Suzuki H, Fiskin E, et al. (2013) Structural basis for phosphorylation-triggered autophagic clearance of Salmonella. Biochem J 454, 459-466.
-
(2013)
Biochem J
, vol.454
, pp. 459-466
-
-
Rogov, V.V.1
Suzuki, H.2
Fiskin, E.3
-
75
-
-
84885576570
-
The ubiquitin ligase parkin mediates resistance to intracellular pathogens
-
Manzanillo PS, Ayres JS, Watson RO, et al. (2013) The ubiquitin ligase parkin mediates resistance to intracellular pathogens. Nature 501, 512-516.
-
(2013)
Nature
, vol.501
, pp. 512-516
-
-
Manzanillo, P.S.1
Ayres, J.S.2
Watson, R.O.3
-
76
-
-
0141844580
-
Structure of the ubiquitin-associated domain of p62 (SQSTM1) and implications for mutations that cause Paget's disease of bone.
-
Ciani B, Layfield R, Cavey JR, Sheppard PW and Searle MS (2003) Structure of the ubiquitin-associated domain of p62. (SQSTM1) and implications for mutations that cause Paget's disease of bone. J Biol Chem 278, 37409-37412.
-
(2003)
J Biol Chem
, vol.278
, pp. 37409-37412
-
-
Ciani, B.1
Layfield, R.2
Cavey, J.R.3
Sheppard, P.W.4
Searle, M.S.5
-
77
-
-
80052405329
-
Crystal structure of the ubiquitin-associated (UBA) domain of p62 and its interaction with ubiquitin
-
Isogai S, Morimoto D, Arita K, et al. (2011) Crystal structure of the ubiquitin-associated (UBA) domain of p62 and its interaction with ubiquitin. J Biol Chem 286, 31864-31874.
-
(2011)
J Biol Chem
, vol.286
, pp. 31864-31874
-
-
Isogai, S.1
Morimoto, D.2
Arita, K.3
-
78
-
-
41949134141
-
Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switch
-
Long J, Gallagher TR, Cavey JR, et al. (2008) Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switch. J Biol Chem 283, 5427-5440.
-
(2008)
J Biol Chem
, vol.283
, pp. 5427-5440
-
-
Long, J.1
Gallagher, T.R.2
Cavey, J.R.3
-
79
-
-
84901036068
-
Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin
-
Walinda E, Morimoto D, Sugase K, Konuma T, Tochio H and Shirakawa M (2014) Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin. J Biol Chem 289, 13890-13902.
-
(2014)
J Biol Chem
, vol.289
, pp. 13890-13902
-
-
Walinda, E.1
Morimoto, D.2
Sugase, K.3
Konuma, T.4
Tochio, H.5
Shirakawa, M.6
-
80
-
-
84908502680
-
A designed conformational shift to control protein binding specificity
-
Michielssens S, Peters JH, Ban D, et al. (2014) A designed conformational shift to control protein binding specificity. Angew Chem Int Ed Engl 53, 10367-10371.
-
(2014)
Angew Chem Int Ed Engl
, vol.53
, pp. 10367-10371
-
-
Michielssens, S.1
Peters, J.H.2
Ban, D.3
-
81
-
-
33747886310
-
Cell signaling and function organized by PB1 domain interactions
-
Moscat J, Diaz-Meco MT, Albert A and Campuzano S (2006) Cell signaling and function organized by PB1 domain interactions. Mol Cell 23, 631-640.
-
(2006)
Mol Cell
, vol.23
, pp. 631-640
-
-
Moscat, J.1
Diaz-Meco, M.T.2
Albert, A.3
Campuzano, S.4
-
82
-
-
77951683740
-
PCS-based structure determination of protein-protein complexes
-
Saio T, Yokochi M, Kumeta H and Inagaki F (2010) PCS-based structure determination of protein-protein complexes. J Biomol NMR 46, 271-280.
-
(2010)
J Biomol NMR
, vol.46
, pp. 271-280
-
-
Saio, T.1
Yokochi, M.2
Kumeta, H.3
Inagaki, F.4
-
83
-
-
84933679024
-
The selective autophagy receptor p62 forms a flexible filamentous helical scaffold
-
Ciuffa R, Lamark T, Tarafder AK, et al. (2015) The selective autophagy receptor p62 forms a flexible filamentous helical scaffold. Cell Rep 11, 748-758.
-
(2015)
Cell Rep
, vol.11
, pp. 748-758
-
-
Ciuffa, R.1
Lamark, T.2
Tarafder, A.K.3
-
84
-
-
70350341493
-
The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappaB signaling pathway
-
Saio T, Yokochi M and Inagaki F (2009) The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappaB signaling pathway. J Biomol NMR 45, 335-341.
-
(2009)
J Biomol NMR
, vol.45
, pp. 335-341
-
-
Saio, T.1
Yokochi, M.2
Inagaki, F.3
-
86
-
-
84934298725
-
Amino-terminal arginylation targets endoplasmic reticulum chaperone BiP for autophagy through p62 binding
-
Cha-Molstad H, Sung KS, Hwang J, et al. (2015) Amino-terminal arginylation targets endoplasmic reticulum chaperone BiP for autophagy through p62 binding. Nat Cell Biol 17, 917-929.
-
(2015)
Nat Cell Biol
, vol.17
, pp. 917-929
-
-
Cha-Molstad, H.1
Sung, K.S.2
Hwang, J.3
-
87
-
-
84944747023
-
Amino-terminal arginylation as a degradation signal for selective autophagy
-
Cha-Molstad H, Kwon YT and Kim BY (2015) Amino-terminal arginylation as a degradation signal for selective autophagy. BMB Rep 48, 487-488.
-
(2015)
BMB Rep
, vol.48
, pp. 487-488
-
-
Cha-Molstad, H.1
Kwon, Y.T.2
Kim, B.Y.3
-
88
-
-
84954129051
-
p62/SQSTM1 functions as a signaling hub and an autophagy adaptor
-
Katsuragi Y, Ichimura Y and Komatsu M (2015) p62/SQSTM1 functions as a signaling hub and an autophagy adaptor. FEBS J 282, 4672-4678.
-
(2015)
FEBS J
, vol.282
, pp. 4672-4678
-
-
Katsuragi, Y.1
Ichimura, Y.2
Komatsu, M.3
-
89
-
-
77954599053
-
p62/SQSTM1 is a target gene for transcription factor NRF2 and creates a positive feedback loop by inducing antioxidant response element-driven gene transcription
-
Jain A, Lamark T, Sjottem E, et al. (2010) p62/SQSTM1 is a target gene for transcription factor NRF2 and creates a positive feedback loop by inducing antioxidant response element-driven gene transcription. J Biol Chem 285, 22576-22591.
-
(2010)
J Biol Chem
, vol.285
, pp. 22576-22591
-
-
Jain, A.1
Lamark, T.2
Sjottem, E.3
-
90
-
-
84883830467
-
Phosphorylation of p62 activates the Keap1-Nrf2 pathway during selective autophagy
-
Ichimura Y, Waguri S, Sou YS, et al. (2013) Phosphorylation of p62 activates the Keap1-Nrf2 pathway during selective autophagy. Mol Cell 51, 618-631.
-
(2013)
Mol Cell
, vol.51
, pp. 618-631
-
-
Ichimura, Y.1
Waguri, S.2
Sou, Y.S.3
-
91
-
-
25644452794
-
Structures of complement component C3 provide insights into the function and evolution of immunity
-
Janssen BJ, Huizinga EG, Raaijmakers HC, et al. (2005) Structures of complement component C3 provide insights into the function and evolution of immunity. Nature 437, 505-511.
-
(2005)
Nature
, vol.437
, pp. 505-511
-
-
Janssen, B.J.1
Huizinga, E.G.2
Raaijmakers, H.C.3
-
92
-
-
84897093101
-
Nrf2 reduces levels of phosphorylated tau protein by inducing autophagy adaptor protein NDP52
-
Jo C, Gundemir S, Pritchard S, Jin YN, Rahman I and Johnson GV (2014) Nrf2 reduces levels of phosphorylated tau protein by inducing autophagy adaptor protein NDP52. Nat Commun 5, 3496.
-
(2014)
Nat Commun
, vol.5
, pp. 3496
-
-
Jo, C.1
Gundemir, S.2
Pritchard, S.3
Jin, Y.N.4
Rahman, I.5
Johnson, G.V.6
-
93
-
-
84874274351
-
Sterical hindrance promotes selectivity of the autophagy cargo receptor NDP52 for the danger receptor galectin-8 in antibacterial autophagy.
-
Li S, Wandel MP, Li F, et al. (2013) Sterical hindrance promotes selectivity of the autophagy cargo receptor NDP52. for the danger receptor galectin-8 in antibacterial autophagy. Sci Signal 6, ra9.
-
(2013)
Sci Signal
, vol.6
, pp. ra9
-
-
Li, S.1
Wandel, M.P.2
Li, F.3
-
94
-
-
84929687804
-
Cryo-EM: A Unique Tool for the Visualization of Macromolecular Complexity
-
Nogales E and Scheres SH (2015) Cryo-EM: A Unique Tool for the Visualization of Macromolecular Complexity. Mol Cell 58, 677-689.
-
(2015)
Mol Cell
, vol.58
, pp. 677-689
-
-
Nogales, E.1
Scheres, S.H.2
-
95
-
-
84877778935
-
Super-resolution in solution X-ray scattering and its applications to structural systems biology
-
Rambo RP and Tainer JA (2013) Super-resolution in solution X-ray scattering and its applications to structural systems biology. Annu Rev Biophys 42, 415-441.
-
(2013)
Annu Rev Biophys
, vol.42
, pp. 415-441
-
-
Rambo, R.P.1
Tainer, J.A.2
-
96
-
-
84891901120
-
Structural and biochemical insights into the homotypic PB1-PB1 complex between PKCzeta and p62
-
Ren J, Wang J, Wang Z and Wu J (2014) Structural and biochemical insights into the homotypic PB1-PB1 complex between PKCzeta and p62. Sci China Life Sci 57, 69-80.
-
(2014)
Sci China Life Sci
, vol.57
, pp. 69-80
-
-
Ren, J.1
Wang, J.2
Wang, Z.3
Wu, J.4
-
97
-
-
40549145175
-
Conformation and dynamics of the three-helix bundle UBA domain of p62 from experiment and simulation
-
Evans CL, Long JE, Gallagher TR, Hirst JD and Searle MS (2008) Conformation and dynamics of the three-helix bundle UBA domain of p62 from experiment and simulation. Proteins 71, 227-240.
-
(2008)
Proteins
, vol.71
, pp. 227-240
-
-
Evans, C.L.1
Long, J.E.2
Gallagher, T.R.3
Hirst, J.D.4
Searle, M.S.5
-
98
-
-
74649083113
-
Dimerisation of the UBA domain of p62 inhibits ubiquitin binding and regulates NF-kappaB signalling
-
Long J, Garner TP, Pandya MJ, et al. (2010) Dimerisation of the UBA domain of p62 inhibits ubiquitin binding and regulates NF-kappaB signalling. J Mol Biol 396, 178-194.
-
(2010)
J Mol Biol
, vol.396
, pp. 178-194
-
-
Long, J.1
Garner, T.P.2
Pandya, M.J.3
-
99
-
-
33947303990
-
On the routine use of soft X-rays in macromolecular crystallography Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths.
-
Mueller-Dieckmann C, Panjikar S, Schmidt A, et al. (2007) On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths. Acta Crystallogr D Biol Crystallogr 63, 366-380.
-
(2007)
Acta Crystallogr D Biol Crystallogr
, vol.63
, pp. 366-380
-
-
Mueller-Dieckmann, C.1
Panjikar, S.2
Schmidt, A.3
|