메뉴 건너뛰기




Volumn 43, Issue 19, 2015, Pages 9249-9261

The interaction of ω2 with the RNA polymerase β′ subunit functions as an activation to repression switch

Author keywords

[No Author keywords available]

Indexed keywords

HOLOENZYME; RNA POLYMERASE BETA SUBUNIT; ADENOSINE TRIPHOSPHATASE; BACTERIAL DNA; BACTERIAL PROTEIN; DNA DIRECTED RNA POLYMERASE; PROTEIN BINDING; REPRESSOR PROTEIN; SIGMA FACTOR; TRANSACTIVATOR PROTEIN;

EID: 84959440300     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv788     Document Type: Article
Times cited : (5)

References (49)
  • 1
    • 84958794169 scopus 로고    scopus 로고
    • The interplay between different stability systems contributes to faithful segregation: Streptococcus pyogenes pSM19035 as a model
    • PLAS-0007
    • Volante,A., Soberón,N.E., Ayora,S. and Alonso,J.C. (2014) The interplay between different stability systems contributes to faithful segregation: Streptococcus pyogenes pSM19035 as a model. Microbiol. Spectrum., 2, PLAS-0007.
    • (2014) Microbiol. Spectrum. , vol.2
    • Volante, A.1    Soberón, N.E.2    Ayora, S.3    Alonso, J.C.4
  • 5
    • 33744983961 scopus 로고    scopus 로고
    • Characterization of a novel partition system encoded by the δ and ω genes from the streptococcal plasmid pSM19035
    • Dmowski,M., Sitkiewicz,I. and Ceglowski,P. (2006) Characterization of a novel partition system encoded by the δ and ω genes from the streptococcal plasmid pSM19035. J. Bacteriol., 188, 4362-4372.
    • (2006) J. Bacteriol. , vol.188 , pp. 4362-4372
    • Dmowski, M.1    Sitkiewicz, I.2    Ceglowski, P.3
  • 6
    • 77953544695 scopus 로고    scopus 로고
    • Plasmid pSM19035, a model to study stable maintenance in Firmicutes
    • Lioy,V.S., Pratto,F., de la Hoz,A.B., Ayora,S. and Alonso,J.C. (2010) Plasmid pSM19035, a model to study stable maintenance in Firmicutes. Plasmid, 64, 1-17.
    • (2010) Plasmid , vol.64 , pp. 1-17
    • Lioy, V.S.1    Pratto, F.2    De La Hoz, A.B.3    Ayora, S.4    Alonso, J.C.5
  • 7
    • 12944273598 scopus 로고    scopus 로고
    • Crystallization and preliminary X-ray diffraction studies of Streptococcus pyogenes plasmid pSM19035-encoded ω transcriptional repressor
    • Murayama,K., de la Hoz,A.B., Alings,C., Lopez,G., Orth,P., Alonso,J.C. and Saenger,W. (1999) Crystallization and preliminary X-ray diffraction studies of Streptococcus pyogenes plasmid pSM19035-encoded ω transcriptional repressor. Acta Crystallogr. D Biol. Crystallogr., 55, 2041-2042.
    • (1999) Acta Crystallogr. D Biol. Crystallogr. , vol.55 , pp. 2041-2042
    • Murayama, K.1    De La Hoz, A.B.2    Alings, C.3    Lopez, G.4    Orth, P.5    Alonso, J.C.6    Saenger, W.7
  • 8
    • 0035824885 scopus 로고    scopus 로고
    • Crystal structure of ω transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 A resolution
    • Murayama,K., Orth,P., de la Hoz,A.B., Alonso,J.C. and Saenger,W. (2001) Crystal structure of ω transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 A resolution. J. Mol. Biol., 314, 789-796.
    • (2001) J. Mol. Biol. , vol.314 , pp. 789-796
    • Murayama, K.1    Orth, P.2    De La Hoz, A.B.3    Alonso, J.C.4    Saenger, W.5
  • 9
    • 33645528243 scopus 로고    scopus 로고
    • Structures of ω repressors bound to direct and inverted DNA repeats explain modulation of transcription
    • Weihofen,W.A., Cicek,A., Pratto,F., Alonso,J.C. and Saenger,W. (2006) Structures of ω repressors bound to direct and inverted DNA repeats explain modulation of transcription. Nucleic Acids Res., 34, 1450-1458.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 1450-1458
    • Weihofen, W.A.1    Cicek, A.2    Pratto, F.3    Alonso, J.C.4    Saenger, W.5
  • 10
    • 3042574824 scopus 로고    scopus 로고
    • Recognition of DNA by ω protein from the broad-host range Streptococcus pyogenes plasmid pSM19035: Analysis of binding to operator DNA with one to four heptad repeats
    • de la Hoz,A.B., Pratto,F., Misselwitz,R., Speck,C., Weihofen,W., Welfle,K., Saenger,W., Welfle,H. and Alonso,J.C. (2004) Recognition of DNA by ω protein from the broad-host range Streptococcus pyogenes plasmid pSM19035: analysis of binding to operator DNA with one to four heptad repeats. Nucleic Acids Res., 32, 3136-3147.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 3136-3147
    • De La Hoz, A.B.1    Pratto, F.2    Misselwitz, R.3    Speck, C.4    Weihofen, W.5    Welfle, K.6    Saenger, W.7    Welfle, H.8    Alonso, J.C.9
  • 12
    • 71049168305 scopus 로고    scopus 로고
    • Single-molecule analysis of protein·DNA complexes formed during partition of newly replicated plasmid molecules in Streptococcus pyogenes
    • Pratto,F., Suzuki,Y., Takeyasu,K. and Alonso,J.C. (2009) Single-molecule analysis of protein·DNA complexes formed during partition of newly replicated plasmid molecules in Streptococcus pyogenes. J. Biol. Chem., 284, 30298-30306.
    • (2009) J. Biol. Chem. , vol.284 , pp. 30298-30306
    • Pratto, F.1    Suzuki, Y.2    Takeyasu, K.3    Alonso, J.C.4
  • 13
    • 79954599462 scopus 로고    scopus 로고
    • Molecular anatomy of the Streptococcus pyogenes pSM19035 partition and segrosome complexes
    • Soberón,N.E., Lioy,V.S., Pratto,F., Volante,A. and Alonso,J.C. (2011) Molecular anatomy of the Streptococcus pyogenes pSM19035 partition and segrosome complexes. Nucleic Acids Res., 39, 2624-2637.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 2624-2637
    • Soberón, N.E.1    Lioy, V.S.2    Pratto, F.3    Volante, A.4    Alonso, J.C.5
  • 14
    • 33947107890 scopus 로고    scopus 로고
    • Binding of regulatory protein ω from Streptococcus pyogenes plasmid pSM19035 to direct and inverted 7-Base pair repeats of operator DNA
    • Dostál,L., Pratto,F., Alonso,J.C. and Welfle,H. (2007) Binding of regulatory protein ω from Streptococcus pyogenes plasmid pSM19035 to direct and inverted 7-Base pair repeats of operator DNA. J. Raman Spectrosc., 38, 166-175.
    • (2007) J. Raman Spectrosc. , vol.38 , pp. 166-175
    • Dostál, L.1    Pratto, F.2    Alonso, J.C.3    Welfle, H.4
  • 15
    • 84937783705 scopus 로고    scopus 로고
    • Molecular anatomy of ParA-ParA and ParA-ParB interactions during plasmid partitioning
    • Volante,A. and Alonso,J.C. (2015) Molecular anatomy of ParA-ParA and ParA-ParB interactions during plasmid partitioning. J. Biol. Chem., 290, 18782-18795.
    • (2015) J. Biol. Chem. , vol.290 , pp. 18782-18795
    • Volante, A.1    Alonso, J.C.2
  • 16
    • 46349097796 scopus 로고    scopus 로고
    • Streptococcus pyogenes pSM19035 requires dynamic assembly of ATP-bound ParA and ParB on parS DNA during plasmid segregation
    • Pratto,F., Cicek,A., Weihofen,W.A., Lurz,R., Saenger,W. and Alonso,J.C. (2008) Streptococcus pyogenes pSM19035 requires dynamic assembly of ATP-bound ParA and ParB on parS DNA during plasmid segregation. Nucleic Acids Res., 36, 3676-3689.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 3676-3689
    • Pratto, F.1    Cicek, A.2    Weihofen, W.A.3    Lurz, R.4    Saenger, W.5    Alonso, J.C.6
  • 17
    • 0001416657 scopus 로고    scopus 로고
    • Neidhardt,F, Curtiss,RI, Ingraham,J, Lin,E, Low,K, Magasanik,B, Reznikoff,W, Riley,M, Schaechter,M and Umbarger,H (eds). 2nd Edn. ASM Press, Washington, DC
    • Record,M. Jr, Reznikoff,W., Craig,M., McQuade,K. and Schlax,P. (1996) In: Neidhardt,F, Curtiss,RI, Ingraham,J, Lin,E, Low,K, Magasanik,B, Reznikoff,W, Riley,M, Schaechter,M and Umbarger,H (eds). In Escherichia coli and Salmonella: Cellular and Molecular Biology. 2nd Edn. ASM Press, Washington, DC, pp. 792-821.
    • (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology , pp. 792-821
    • Record, M.1    Reznikoff, W.2    Craig, M.3    McQuade, K.4    Schlax, P.5
  • 19
    • 73649093377 scopus 로고    scopus 로고
    • Molecular evolution of multisubunit RNA polymerases: Structural analysis
    • Lane,W.J. and Darst,S.A. (2010) Molecular evolution of multisubunit RNA polymerases: structural analysis. J. Mol. Biol., 395, 686-704.
    • (2010) J. Mol. Biol. , vol.395 , pp. 686-704
    • Lane, W.J.1    Darst, S.A.2
  • 21
    • 0035312415 scopus 로고    scopus 로고
    • Bacterial RNA polymerase
    • Darst,S.A. (2001) Bacterial RNA polymerase. Curr. Opin. Struct. Biol., 11, 155-162.
    • (2001) Curr. Opin. Struct. Biol. , vol.11 , pp. 155-162
    • Darst, S.A.1
  • 22
  • 23
    • 0242692671 scopus 로고    scopus 로고
    • Multiple σ subunits and the partitioning of bacterial transcription space
    • Gruber,T.M. and Gross,C.A. (2003) Multiple σ subunits and the partitioning of bacterial transcription space. Annu. Rev. Microbiol., 57, 441-466.
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 441-466
    • Gruber, T.M.1    Gross, C.A.2
  • 24
    • 0034671288 scopus 로고    scopus 로고
    • RNA polymerase: Structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II
    • Ebright,R.H. (2000) RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II. J. Mol. Biol., 304, 687-698.
    • (2000) J. Mol. Biol. , vol.304 , pp. 687-698
    • Ebright, R.H.1
  • 25
    • 45449099933 scopus 로고    scopus 로고
    • Advances in bacterial promoter recognition and its control by factors that do not bind DNA
    • Haugen,S.P., Ross,W. and Gourse,R.L. (2008) Advances in bacterial promoter recognition and its control by factors that do not bind DNA. Nat. Rev. Microbiol., 6, 507-519.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 507-519
    • Haugen, S.P.1    Ross, W.2    Gourse, R.L.3
  • 26
    • 0037123602 scopus 로고    scopus 로고
    • Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
    • Murakami,K.S., Masuda,S., Campbell,E.A., Muzzin,O. and Darst,S.A. (2002) Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science, 296, 1285-1290.
    • (2002) Science , vol.296 , pp. 1285-1290
    • Murakami, K.S.1    Masuda, S.2    Campbell, E.A.3    Muzzin, O.4    Darst, S.A.5
  • 28
    • 79959368804 scopus 로고    scopus 로고
    • Mechanism of bacterial transcription initiation: RNA polymerase - Promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis
    • Saecker,R.M., Record,M.T. Jr and Dehaseth,P.L. (2011) Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis. J. Mol. Biol., 412, 754-771.
    • (2011) J. Mol. Biol. , vol.412 , pp. 754-771
    • Saecker, R.M.1    Record, M.T.2    Dehaseth, P.L.3
  • 29
    • 1842591130 scopus 로고    scopus 로고
    • The regulation of bacterial transcription initiation
    • Browning,D.F. and Busby,S.J. (2004) The regulation of bacterial transcription initiation. Nat. Rev. Microbiol., 2, 57-65.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 57-65
    • Browning, D.F.1    Busby, S.J.2
  • 30
    • 0032561518 scopus 로고    scopus 로고
    • Rapid isolation of RNA polymerase from sporulating cells of Bacillus subtilis
    • Fujita,M. and Sadaie,Y. (1998) Rapid isolation of RNA polymerase from sporulating cells of Bacillus subtilis. Gene, 221, 185-190.
    • (1998) Gene , vol.221 , pp. 185-190
    • Fujita, M.1    Sadaie, Y.2
  • 32
    • 0017695488 scopus 로고
    • On the resolution of polypeptides by isoelectric focusing in polyacrylamide gels in the presence of urea and nonidet-p40
    • Zechel,K. (1977) On the resolution of polypeptides by isoelectric focusing in polyacrylamide gels in the presence of urea and nonidet-p40. Anal. Biochem., 83, 240-251.
    • (1977) Anal. Biochem. , vol.83 , pp. 240-251
    • Zechel, K.1
  • 33
    • 39149110297 scopus 로고    scopus 로고
    • Detecting protein-protein interactions by Far western blotting
    • Wu,Y., Li,Q. and Chen,X.Z. (2007) Detecting protein-protein interactions by Far western blotting. Nat. Protoc., 2, 3278-3284.
    • (2007) Nat. Protoc. , vol.2 , pp. 3278-3284
    • Wu, Y.1    Li, Q.2    Chen, X.Z.3
  • 35
    • 0036529547 scopus 로고    scopus 로고
    • Rhodobacter sphaeroides LexA has dual activity: Optimising and repressing recA gene transcription
    • Tapias,A., Fernandez,S., Alonso,J.C. and Barbe,J. (2002) Rhodobacter sphaeroides LexA has dual activity: optimising and repressing recA gene transcription. Nucleic Acids Res., 30, 1539-1546.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1539-1546
    • Tapias, A.1    Fernandez, S.2    Alonso, J.C.3    Barbe, J.4
  • 36
    • 0033593587 scopus 로고    scopus 로고
    • Silencing of genes flanking the P1 plasmid centromere
    • Rodionov,O., Lobocka,M. and Yarmolinsky,M. (1999) Silencing of genes flanking the P1 plasmid centromere. Science, 283, 546-549.
    • (1999) Science , vol.283 , pp. 546-549
    • Rodionov, O.1    Lobocka, M.2    Yarmolinsky, M.3
  • 37
    • 0028960197 scopus 로고
    • SopB protein-mediated silencing of genes linked to the sopC locus of Escherichia coli F plasmid
    • Lynch,A.S. and Wang,J.C. (1995) SopB protein-mediated silencing of genes linked to the sopC locus of Escherichia coli F plasmid. Proc. Natl. Acad. Sci. U.S.A., 92, 1896-1900.
    • (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 1896-1900
    • Lynch, A.S.1    Wang, J.C.2
  • 38
    • 84941308461 scopus 로고    scopus 로고
    • ParAB partition dynamics in Firmicutes: Nucleoid bound ParA captures and tethers ParB-plasmid complexes
    • Lioy,V.S., Volante,A., Soberón,N.E.,Lurz,R.,Ayora,S.and Alonso,J.C. (2015) ParAB partition dynamics in Firmicutes: nucleoid bound ParA captures and tethers ParB-plasmid complexes. PLoS One, 10, e0131943.
    • (2015) PLoS One , vol.10
    • Lioy, V.S.1    Volante, A.2    Soberón, N.E.3    Lurz, R.4    Ayora, S.5    Alonso, J.C.6
  • 39
    • 34548046005 scopus 로고    scopus 로고
    • Ribbon-helix-helix transcription factors: Variations on a theme
    • Schreiter,E.R. and Drennan,C.L. (2007) Ribbon-helix-helix transcription factors: variations on a theme. Nat. Rev. Microbiol., 5, 710-720.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 710-720
    • Schreiter, E.R.1    Drennan, C.L.2
  • 40
    • 0029786848 scopus 로고    scopus 로고
    • Dual regulation of open-complex formation and promoter clearance by Arc explains a novel repressor to activator switch
    • Smith,T.L. and Sauer,R.T. (1996) Dual regulation of open-complex formation and promoter clearance by Arc explains a novel repressor to activator switch. Proc. Natl. Acad. Sci. U.S.A., 93, 8868-8872.
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 8868-8872
    • Smith, T.L.1    Sauer, R.T.2
  • 43
    • 84861206911 scopus 로고    scopus 로고
    • The transcription factor AmrZ utilizes multiple DNA binding modes to recognize activator and repressor sequences of Pseudomonas aeruginosa virulence genes
    • Pryor,E.E. Jr, Waligora,E.A., Xu,B., Dellos-Nolan,S., Wozniak,D.J. and Hollis,T. (2012) The transcription factor AmrZ utilizes multiple DNA binding modes to recognize activator and repressor sequences of Pseudomonas aeruginosa virulence genes. PLoS Pathog., 8, e1002648.
    • (2012) PLoS Pathog. , vol.8
    • Pryor, E.E.1    Waligora, E.A.2    Xu, B.3    Dellos-Nolan, S.4    Wozniak, D.J.5    Hollis, T.6
  • 44
    • 36348959131 scopus 로고    scopus 로고
    • Mapping of RNA polymerase residues that interact with bacteriophage Xp10 transcription antitermination factor p7
    • Yuzenkova,Y., Zenkin,N. and Severinov,K. (2008) Mapping of RNA polymerase residues that interact with bacteriophage Xp10 transcription antitermination factor p7. J. Mol. Biol., 375, 29-35.
    • (2008) J. Mol. Biol. , vol.375 , pp. 29-35
    • Yuzenkova, Y.1    Zenkin, N.2    Severinov, K.3
  • 45
    • 79957445257 scopus 로고    scopus 로고
    • Mutations in beta′ subunit of Escherichia coli RNA polymerase perturb the activator polymerase functional interaction required for promoter clearance
    • Swapna,G., Chakraborty,A., Kumari,V., Sen,R. and Nagaraja,V. (2011) Mutations in beta′ subunit of Escherichia coli RNA polymerase perturb the activator polymerase functional interaction required for promoter clearance. Mol. Microbiol., 80, 1169-1185.
    • (2011) Mol. Microbiol. , vol.80 , pp. 1169-1185
    • Swapna, G.1    Chakraborty, A.2    Kumari, V.3    Sen, R.4    Nagaraja, V.5
  • 48
    • 0030896970 scopus 로고    scopus 로고
    • RNA polymerase beta′ subunit: A target of DNA binding-independent activation
    • Miller,A., Wood,D., Ebright,R.H. and Rothman-Denes,L.B. (1997) RNA polymerase beta′ subunit: a target of DNA binding-independent activation. Science, 275, 1655-1657.
    • (1997) Science , vol.275 , pp. 1655-1657
    • Miller, A.1    Wood, D.2    Ebright, R.H.3    Rothman-Denes, L.B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.