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Volumn 32, Issue 10, 2004, Pages 3136-3147

Recognition of DNA by ω protein from the broad-host range Streptococcus pyogenes plasmid pSM19035: Analysis of binding to operator DNA with one to four heptad repeats

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; BACTERIAL DNA; CYTOSINE; DIMER; DNA TOPOISOMERASE; HYDROXYL RADICAL; NUCLEIC ACID; REPETITIVE DNA; THYMINE; BACTERIAL PROTEIN; DEOXYRIBONUCLEASE I; METHIONINE REPRESSOR PROTEIN, BACTERIA; REPRESSOR PROTEIN;

EID: 3042574824     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh633     Document Type: Article
Times cited : (41)

References (34)
  • 3
    • 0036583638 scopus 로고    scopus 로고
    • Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator
    • Blanco,A.G., Sola,M., Gomis-Ruth,F.X. and Coll,M. (2002) Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. Structure (Camb), 10, 701-713.
    • (2002) Structure (Camb) , vol.10 , pp. 701-713
    • Blanco, A.G.1    Sola, M.2    Gomis-Ruth, F.X.3    Coll, M.4
  • 4
    • 0041559751 scopus 로고    scopus 로고
    • Regulation of sialic acid catabolism by the DNA binding protein NanR in Escherichia coli
    • Kalivoda,K.A., Steenbergen,S.M., Vimr,E.R. and Plumbridge,J. (2003) Regulation of sialic acid catabolism by the DNA binding protein NanR in Escherichia coli. J. Bacteriol., 185, 4806-4815.
    • (2003) J. Bacteriol. , vol.185 , pp. 4806-4815
    • Kalivoda, K.A.1    Steenbergen, S.M.2    Vimr, E.R.3    Plumbridge, J.4
  • 5
    • 0346980557 scopus 로고    scopus 로고
    • Bacterial mitosis: ParM of plasmid R1 moves plasmid DNA by an actin-like insertional polymerization mechanism
    • Moller-Jensen,J., Borch,J., Dam,M., Jensen,R.B., Roepstorff,P. and Gerdes,K. (2003) Bacterial mitosis: ParM of plasmid R1 moves plasmid DNA by an actin-like insertional polymerization mechanism. Mol. Cell, 12, 1477-1487.
    • (2003) Mol. Cell , vol.12 , pp. 1477-1487
    • Moller-Jensen, J.1    Borch, J.2    Dam, M.3    Jensen, R.B.4    Roepstorff, P.5    Gerdes, K.6
  • 6
    • 0026641755 scopus 로고
    • Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by β-strands
    • Somers,W.S. and Phillips,S.E. (1992) Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by β-strands. Nature, 359, 387-393.
    • (1992) Nature , vol.359 , pp. 387-393
    • Somers, W.S.1    Phillips, S.E.2
  • 7
    • 0028177303 scopus 로고
    • DNA recognition by β-sheets in the Arc repressor-operator crystal structure
    • Raumann,B.E., Rould,M.A., Pabo,C.O. and Sauer,R.T. (1994) DNA recognition by β-sheets in the Arc repressor-operator crystal structure. Nature, 367, 754-757.
    • (1994) Nature , vol.367 , pp. 754-757
    • Raumann, B.E.1    Rould, M.A.2    Pabo, C.O.3    Sauer, R.T.4
  • 10
    • 0035824885 scopus 로고    scopus 로고
    • Crystal structure of omega transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 Å resolution
    • Murayama,K., Orth,P., de la Hoz,A.B., Alonso,J.C. and Saenger,W. (2001) Crystal structure of omega transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 Å resolution. J. Mol. Biol., 314, 789-796.
    • (2001) J. Mol. Biol. , vol.314 , pp. 789-796
    • Murayama, K.1    Orth, P.2    de la Hoz, A.B.3    Alonso, J.C.4    Saenger, W.5
  • 11
    • 0344826584 scopus 로고    scopus 로고
    • ParG, a protein required for active partition of bacterial plasmids, has a dimeric ribbon-helix-helix structure
    • Golovanov,A.P., Barilla,D., Golovanova,M., Hayes,F. and Lian,L.Y. (2003) ParG, a protein required for active partition of bacterial plasmids, has a dimeric ribbon-helix-helix structure. Mol. Microbiol., 50, 1141-1153
    • (2003) Mol. Microbiol. , vol.50 , pp. 1141-1153
    • Golovanov, A.P.1    Barilla, D.2    Golovanova, M.3    Hayes, F.4    Lian, L.Y.5
  • 15
    • 0023041394 scopus 로고
    • An underlying repeat in some transcriptional control sequences corresponding to half a double helical turn of DNA
    • Rhodes,D. and Klug,A. (1986) An underlying repeat in some transcriptional control sequences corresponding to half a double helical turn of DNA. Cell, 46, 123-132.
    • (1986) Cell , vol.46 , pp. 123-132
    • Rhodes, D.1    Klug, A.2
  • 16
    • 0029739627 scopus 로고    scopus 로고
    • Cooperative DNA binding and sequence-selective recognition conferred by the STAT amino-terminal domain
    • Xu,X., Sun,Y.L. and Hoey,T. (1996) Cooperative DNA binding and sequence-selective recognition conferred by the STAT amino-terminal domain. Science, 273, 794-797.
    • (1996) Science , vol.273 , pp. 794-797
    • Xu, X.1    Sun, Y.L.2    Hoey, T.3
  • 17
    • 0025965278 scopus 로고
    • Cooperative binding of Drosophila heat shock factor to arrays of a conserved 5 bp unit
    • Xiao,H., Perisic,O. and Lis,J.T. (1991) Cooperative binding of Drosophila heat shock factor to arrays of a conserved 5 bp unit. Cell, 64, 585-593.
    • (1991) Cell , vol.64 , pp. 585-593
    • Xiao, H.1    Perisic, O.2    Lis, J.T.3
  • 18
    • 0027481037 scopus 로고
    • Characterization of the DNA binding domain of the mouse IRF-2 protein
    • Uegaki,K., Shirakawa,M., Fujita,T., Taniguchi,T. and Kyogoku,Y. (1993) Characterization of the DNA binding domain of the mouse IRF-2 protein. Protein Eng., 6, 195-200.
    • (1993) Protein Eng. , vol.6 , pp. 195-200
    • Uegaki, K.1    Shirakawa, M.2    Fujita, T.3    Taniguchi, T.4    Kyogoku, Y.5
  • 19
    • 0035958021 scopus 로고    scopus 로고
    • Heterodimerization of mineralocorticoid and glucocorticoid receptors at a novel negative response element of the 5-HT1A receptor gene
    • Ou,X.M., Storring,J.M., Kushwaha,N. and Albert,P.R. (2001) Heterodimerization of mineralocorticoid and glucocorticoid receptors at a novel negative response element of the 5-HT1A receptor gene. J. Biol. Chem., 276, 14299-14307.
    • (2001) J. Biol. Chem. , vol.276 , pp. 14299-14307
    • Ou, X.M.1    Storring, J.M.2    Kushwaha, N.3    Albert, P.R.4
  • 20
    • 0025812291 scopus 로고
    • Direct repeats as selective response elements for the thyroid hormone, retinoic acid and vitamin D3 receptors
    • Umesono,K., Murakami,K.K., Thompson,C.C. and Evans,R.M. (1991) Direct repeats as selective response elements for the thyroid hormone, retinoic acid and vitamin D3 receptors. Cell, 65, 1255-1266.
    • (1991) Cell , vol.65 , pp. 1255-1266
    • Umesono, K.1    Murakami, K.K.2    Thompson, C.C.3    Evans, R.M.4
  • 21
    • 0025860708 scopus 로고
    • The orientation and spacing of core DNA-binding motifs dictate selective transcriptional responses to three nuclear receptors
    • Naar,A.M., Boutin,J.M., Lipkin,S.M., Yu,V.C., Holloway,J.M., Glass,C.K. and Rosenfeld,M.G. (1991) The orientation and spacing of core DNA-binding motifs dictate selective transcriptional responses to three nuclear receptors. Cell, 65, 1267-1279.
    • (1991) Cell , vol.65 , pp. 1267-1279
    • Naar, A.M.1    Boutin, J.M.2    Lipkin, S.M.3    Yu, V.C.4    Holloway, J.M.5    Glass, C.K.6    Rosenfeld, M.G.7
  • 22
    • 0029044997 scopus 로고
    • Structural determinants of nuclear receptor assembly on DNA direct repeats
    • Rastinejad,F., Perlmann,T., Evans,R.M. and Sigler,P.B. (1995) Structural determinants of nuclear receptor assembly on DNA direct repeats. Nature, 375, 203-211.
    • (1995) Nature , vol.375 , pp. 203-211
    • Rastinejad, F.1    Perlmann, T.2    Evans, R.M.3    Sigler, P.B.4
  • 23
    • 0026279733 scopus 로고
    • Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system
    • Studier,F.W. (1991) Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. J. Mol. Biol., 219, 37-44.
    • (1991) J. Mol. Biol. , vol.219 , pp. 37-44
    • Studier, F.W.1
  • 25
    • 12944273598 scopus 로고    scopus 로고
    • Crystallization preliminary X-ray diffraction studies of Streptococcus pyogenes plasmid pSM19035-encoded omega transcriptional repressor
    • Murayama,K., de la Hoz,A.B., Alings,C., Lopez,G., Orth,P., Alonso,J.C. and Saenger,W. (1999) Crystallization and preliminary X-ray diffraction studies of Streptococcus pyogenes plasmid pSM19035-encoded omega transcriptional repressor. Acta. Crystallogr. D Biol. Crystallogr., 55, 2041-2042.
    • (1999) Acta Crystallogr. D Biol. Crystallogr. , vol.55 , pp. 2041-2042
    • Murayama, K.1    de la Hoz, A.B.2    Alings, C.3    Lopez, G.4    Orth, P.5    Alonso, J.C.6    Saenger, W.7
  • 26
    • 0035929158 scopus 로고    scopus 로고
    • Stability and DNA-binding properties of the omega regulator protein from the broad-host range Streptococcus pyogenes plasmid pSM19035
    • Misselwitz,R., de la Hoz,A.B., Ayora,S., Welfle,K., Behlke,J., Murayama,K., Saenger,W., Alonso,J.C. and Welfle,H. (2001) Stability and DNA-binding properties of the omega regulator protein from the broad-host range Streptococcus pyogenes plasmid pSM19035. FEBS Lett., 505, 436-440.
    • (2001) FEBS Lett. , vol.505 , pp. 436-440
    • Misselwitz, R.1    de la Hoz, A.B.2    Ayora, S.3    Welfle, K.4    Behlke, J.5    Murayama, K.6    Saenger, W.7    Alonso, J.C.8    Welfle, H.9
  • 27
    • 0033229814 scopus 로고    scopus 로고
    • ATP- and ADP-dnaA protein, a molecular switch in gene regulation
    • Speck,C., Weigel,C. and Messer,W. (1999) ATP- and ADP-dnaA protein, a molecular switch in gene regulation. EMBO J., 18, 6169-6176.
    • (1999) EMBO J. , vol.18 , pp. 6169-6176
    • Speck, C.1    Weigel, C.2    Messer, W.3
  • 28
    • 0001268975 scopus 로고
    • Hydroxyl radical footprinting: High-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein
    • Tullius,T.D. and Dombroski,B.A. (1986) Hydroxyl radical footprinting: high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein. Proc. Natl Acad. Sci. USA, 83, 5469-5473.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 5469-5473
    • Tullius, T.D.1    Dombroski, B.A.2
  • 29
    • 0003889491 scopus 로고    scopus 로고
    • Wiley-Interscience, New York, Chichester, Weinheim, Brisbane, Singapore, Toronto, Canada
    • Hammes,G.G. (2000) Thermodynamics and Kinetics for the Biological Sciences. Wiley-Interscience, New York, Chichester, Weinheim, Brisbane, Singapore, Toronto, Canada.
    • (2000) Thermodynamics and Kinetics for the Biological Sciences
    • Hammes, G.G.1
  • 30
    • 0029048582 scopus 로고
    • P22 Arc repressor: Role of cooperativity in repression and binding to operators with altered half-site spacing
    • Smith,T.L. and Sauer,R.T. (1995) P22 Arc repressor: role of cooperativity in repression and binding to operators with altered half-site spacing. J. Mol. Biol., 249, 729-742.
    • (1995) J. Mol. Biol. , vol.249 , pp. 729-742
    • Smith, T.L.1    Sauer, R.T.2
  • 31
    • 0030606226 scopus 로고    scopus 로고
    • Role of operator subsites in Arc repression
    • Smith,T.L. and Sauer,R.T. (1996) Role of operator subsites in Arc repression. J. Mol. Biol., 264, 233-242.
    • (1996) J. Mol. Biol. , vol.264 , pp. 233-242
    • Smith, T.L.1    Sauer, R.T.2
  • 34
    • 0038558329 scopus 로고    scopus 로고
    • Raman spectroscopy of regulatory protein Omega from Streptococcus pyogenes plasmid pSM19035 and complexes with operator DNA
    • Dostál,L., Misselwitz,R., Laettig,S., Alonso,J.C. and Welfle,H. (2003) Raman spectroscopy of regulatory protein Omega from Streptococcus pyogenes plasmid pSM19035 and complexes with operator DNA. Spectroscopy, 17, 435-445.
    • (2003) Spectroscopy , vol.17 , pp. 435-445
    • Dostál, L.1    Misselwitz, R.2    Laettig, S.3    Alonso, J.C.4    Welfle, H.5


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