Efficient Targeted Genome Modification in Maize Using CRISPR/Cas9 System

Journal of Genetics and Genomics

Volumn 43, Issue 1, 2016, Pages 37-43

  Feng, Chao ^a,b   Yuan, Jing ^a   Wang, Rui ^a   Liu, Yang ^a,b   Birchler, James A ^c   Han, Fangpu ^a  

^a INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c UNIVERSITY OF MISSOURI   (United States)

Author keywords

CRISPR Cas9; Heterochromatic region; Maize; Targeted genome modification

Indexed keywords

GENOMIC DNA; CRISPR ASSOCIATED PROTEIN; DEOXYRIBONUCLEASE; GENETIC MARKER; HETEROCHROMATIN;

AGROBACTERIUM; ARTICLE; CRISPR CAS SYSTEM; GENE TARGETING; GENOME; MAIZE; MARKER GENE; NONHUMAN; PHENOTYPE; PROTOPLAST; SEEDLING; ZMZB7 GENE; GENE EDITING; GENETIC MARKER; GENETICS; HETEROCHROMATIN; METABOLISM; PLANT GENE; PLANT GENOME;

CRISPR-ASSOCIATED PROTEINS; CRISPR-CAS SYSTEMS; ENDODEOXYRIBONUCLEASES; GENE EDITING; GENE TARGETING; GENES, PLANT; GENETIC MARKERS; GENOME, PLANT; HETEROCHROMATIN; ZEA MAYS;

EID: 84957839838     PISSN: 16738527     EISSN: 18735533     Source Type: Journal    
DOI: 10.1016/j.jgg.2015.10.002     Document Type: Article

References (38)

1. Bassett A.R., Liu J.L. CRISPR/Cas9 and genome editing in Drosophila. J. Genet. Genomics 2014, 41:7-19.
2. Candela H., Hake S. The art and design of genetic screens: maize. Nat. Rev. Genet. 2008, 9:192-203.
3. Carroll D. Genome engineering with zinc-finger nucleases. Genetics 2011, 188:773-782.
4. Cho S.W., Kim S., Kim J.M., Kim J.S. Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat. Biotechnol. 2013, 31:230-232.
5. Cong L., Ran F.A., Cox D., Lin S., Barretto R., Habib N., Hsu P.D., Wu X., Jiang W., Marraffini L.A., Zhang F. Multiplex genome engineering using CRISPR/Cas systems. Science 2013, 339:819-823.
6. Dillon N., Festenstein R. Unravelling heterochromatin: competition between positive and negative factors regulates accessibility. Trends Genet. 2002, 18:252-258.
7. Feng Z.Y., Mao Y., Xu N., Zhang B., Wei P., Yang D., Wang Z., Zhang Z., Zheng R., Yang L., Zeng L., Liu X., Zhu J. Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis. Proc. Natl. Acad. Sci. USA 2014, 111:4632-4637.
8. Feng Z.Y., Zhang B.T., Ding W.N., Liu X.D., Yang D.L., Wei P.L., Cao F.Q., Zhu S.H., Zhang F., Mao Y.F., Zhu J.K. Efficient genome editing in plants using a CRISPR/Cas system. Cell Res. 2013, 23:1229-1232.
9. Fauser F., Schiml S., Puchta H. Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J. 2014, 79:348-359.
10. Frame B.R., Shou H., Chikwamba R.K., Zhang Z., Xiang C., Fonger T.M., Pegg S.E.K., Li B., Nettleton D.S., Pei D. Agrobacterium tumefaciens-mediated transformation of maize embryos using a standard binary vector system. Plant Physiol. 2002, 129:13-22.
11. Fu S., Lv Z., Gao Z., Wu H., Pang J., Zhang B., Dong Q., Guo X., Wang X.-J., Birchler J.A. De novo centromere formation on a chromosome fragment in maize. Proc. Natl. Acad. Sci. USA 2013, 110:6033-6036.
12. Fu Y., Foden J.A., Khayter C., Maeder M.L., Reyon D., Joung J.K., Sander J.D. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat. Biotechnol. 2013, 31:822-826.
13. He G., Chen B., Wang X., Li X., Li J., He H., Yang M., Lu L., Qi Y., Wang X., Deng X.W. Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids. Genome Biol. 2013, 14:R57.
14. Hsu P.D., Lander E.S., Zhang F. Development and applications of CRISPR-Cas9 for genome engineering. Cell 2014, 157:1262-1278.
15. Hwang W.Y., Fu Y.F., Reyon D., Maeder M.L., Tsai S.Q., Sander J.D., Peterson R.T., Yeh J.R.J., Joung J.K. Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat. Biotechnol. 2013, 31:227-229.
16. Jia H., Wang N. Targeted genome editing of sweet orange using Cas9/sgRNA. PLoS One 2014, 9:e93806.
17. Jiang W.Y., Bikard D., Cox D., Zhang F., Marraffini L.A. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat. Biotechnol. 2013, 31:233-239.
18. Jinek M., Chylinski K., Fonfara I., Hauer M., Doudna J.A., Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012, 337:816-821.
19. Johnson R.A., Gurevich V., Filler S., Samach A., Levy A.A. Comparative assessments of CRISPR-Cas nucleases' cleavage efficiency in planta. Plant Mol. Biol. 2015, 87:143-156.
20. Joung J.K., Sander J.D. TALENs: a widely applicable technology for targeted genome editing. Nat. Rev. Mol. Cell Biol. 2012, 14:49-55.
21. Leader D.J., Connelly S., Filipowicz W., Brown J.W. Characterisation and expression of a maize U3 snRNA gene. Biochim. Biophys. Acta 1994, 1219:145-147.
22. Li D.L., Qiu Z.W., Shao Y.J., Chen Y.T., Guan Y.T., Liu M.Z., Li Y.M., Gao N., Wang L.R., Lu X.L., Zhao Y.X., Liu M.Y. Heritable gene targeting in the mouse and rat using a CRISPR-Cas system. Nat. Biotechnol. 2013, 31:681-683.
23. Li J.F., Norville J.E., Aach J., McCormack M., Zhang D.D., Bush J., Church G.M., Sheen J. Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat. Biotechnol. 2013, 31:688-691.
24. Liang Z., Zhang K., Chen K., Gao C. Targeted mutagenesis in Zea mays using TALENs and the CRISPR/Cas system. J. Genet. Genomics 2014, 41:63-68.
25. Lu X.M., Hu X.J., Zhao Y.Z., Song W.B., Zhang M., Chen Z.L., Chen W., Dong Y.B., Wang Z.H., Lai J.S. Map-based cloning of zb7 encoding an IPP and DMAPP synthase in the MEP pathway of maize. Mol. Plant 2012, 5:1100-1112.
26. Mali P., Yang L., Esvelt K.M., Aach J., Guell M., DiCarlo J.E., Norville J.E., Church G.M. RNA-guided human genome engineering via Cas9. Science 2013, 339:823-826.
27. Nekrasov V., Staskawicz B., Weigel D., Jones J.D., Kamoun S. Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat. Biotechnol. 2013, 31:691-693.
28. Pattanayak V., Lin S., Guilinger J.P., Ma E., Doudna J.A., Liu D.R. High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity. Nat. Biotechnol. 2013, 31:839-843.
29. Perez-Pinera P., Ousterout D.G., Gersbach C.A. Advances in targeted genome editing. Curr. Opin. Chem. Biol. 2012, 16:268-277.
30. Puchta H., Fauser F. Gene targeting in plants: 25 years later. Int. J. Dev. Biol. 2013, 57:629-637.
31. Shan Q.W., Wang Y.P., Li J., Zhang Y., Chen K.L., Liang Z., Zhang K., Liu J.X., Xi J.J., Qiu J.L., Gao C.X. Targeted genome modification of crop plants using a CRISPR-Cas system. Nat. Biotechnol. 2013, 31:686-688.
32. Svitashev S., Young J., Schwartz C., Gao H., Falco S.C., Cigan A.M. Targeted mutagenesis, precise gene editing and site-specific gene insertion in maize using Cas9 and guide RNA. Plant Physiol. 2015, 169:931-945.
33. Wolfgruber T.K., Sharma A., Schneider K.L., Albert P.S., Koo D.H., Shi J., Gao Z., Han F., Lee H., Xu R. Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic loci shaped primarily by retrotransposons. PLoS Genet. 2009, 5:e1000743.
34. Xing H.L., Dong L., Wang Z.P., Zhang H.Y., Han C.Y., Liu B., Wang X.C., Chen Q.J. A CRISPR/Cas9 toolkit for multiplex genome editing in plants. BMC Plant Biol. 2014, 14:327.
35. Xu R., Li H., Qin R., Wang L., Li L., Wei P.C., Yang J.B. Gene targeting using the Agrobacterium tumefaciens-mediated CRISPR-Cas system in rice. Rice 2014, 7:5.
36. Yu Z., Ren M., Wang Z., Zhang B., Rong Y.S., Jiao R., Gao G. Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila. Genetics 2013, 195:289-291.
37. Zhang H., Zhang J., Wei P., Zhang B., Gou F., Feng Z., Mao Y., Yang L., Zhang H., Xu N., Zhu J. The CRISPR/Cas9 system produces specific and homozygous targete gene editing in rice in one gerneration. Plant Biotech. J. 2014, 12:797-807.
38. Zhang Y., Su J., Duan S., Ao Y., Dai J., Liu J., Wang P., Li Y., Liu B., Feng D., Wang J., Wang H.B. A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods 2011, 7:30.